Wall clock time and date at job start Sun Mar 29 2020 22:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47482 * 2 1 4 4 C 1.42898 * 114.00223 * 179.97438 * 3 2 1 5 5 H 1.09007 * 112.84961 * 18.80672 * 4 3 2 6 6 C 1.53785 * 113.61856 * 247.49811 * 4 3 2 7 7 C 1.53780 * 87.07878 * 270.88045 * 6 4 3 8 8 H 1.09005 * 113.69033 * 89.13024 * 7 6 4 9 9 N 1.46499 * 113.61494 * 220.01398 * 7 6 4 10 10 C 1.36940 * 120.00173 * 252.50485 * 9 7 6 11 11 H 1.07999 * 120.00017 * 359.97438 * 10 9 7 12 12 C 1.38804 * 119.99941 * 180.02562 * 10 9 7 13 13 N 1.31624 * 120.00326 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00104 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47263 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47269 * 59.99308 * 14 12 10 17 17 H 1.48497 * 109.46828 * 299.99576 * 14 12 10 18 18 C 1.53776 * 87.08492 * 334.56558 * 7 6 4 19 19 C 1.53002 * 113.61443 * 139.97917 * 18 7 6 20 20 C 1.53004 * 109.46890 * 64.94702 * 19 18 7 21 21 C 1.52991 * 113.61494 * 270.88436 * 18 7 6 22 22 C 1.53005 * 109.47495 * 174.76024 * 21 18 7 23 23 H 1.08993 * 109.47112 * 59.99452 * 1 2 3 24 24 H 1.08995 * 109.47635 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46724 * 299.99866 * 1 2 3 26 26 H 1.08997 * 109.46908 * 239.99887 * 2 1 3 27 27 H 1.09000 * 109.46993 * 120.00239 * 2 1 3 28 28 H 1.08997 * 113.61382 * 156.32884 * 6 4 3 29 29 H 1.08998 * 113.61076 * 25.43068 * 6 4 3 30 30 H 0.96997 * 119.99843 * 72.49847 * 9 7 6 31 31 H 0.97005 * 119.99458 * 0.02562 * 13 12 10 32 32 H 1.08998 * 109.47367 * 184.94698 * 19 18 7 33 33 H 1.08998 * 109.47344 * 304.94877 * 19 18 7 34 34 H 1.08997 * 109.46978 * 64.31362 * 20 19 18 35 35 H 1.09002 * 109.46605 * 184.30429 * 20 19 18 36 36 H 1.08990 * 109.47244 * 304.31278 * 20 19 18 37 37 H 1.09000 * 109.47404 * 294.76000 * 21 18 7 38 38 H 1.09000 * 109.47232 * 54.75574 * 21 18 7 39 39 H 1.08990 * 109.47437 * 185.23770 * 22 21 18 40 40 H 1.09004 * 109.46666 * 305.23990 * 22 21 18 41 41 H 1.09001 * 109.46797 * 65.23653 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.9281 0.5454 -0.3229 6 6 4.0020 2.0463 1.3025 7 6 3.8393 3.4326 0.6569 8 1 2.8648 3.8872 0.8354 9 7 4.9518 4.3440 0.9358 10 6 4.7779 5.3925 1.7994 11 1 3.8206 5.5477 2.2746 12 6 5.8319 6.2564 2.0632 13 7 6.9985 6.0676 1.4838 14 14 5.5946 7.6871 3.2407 15 1 6.8620 8.4529 3.3510 16 1 5.2119 7.1688 4.5787 17 1 4.5212 8.5765 2.7289 18 6 3.9491 2.7249 -0.7039 19 6 2.9885 3.2752 -1.7601 20 6 3.3601 4.7241 -2.0820 21 6 5.3857 2.5973 -1.2142 22 6 5.3984 1.7696 -2.5010 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.0400 1.7699 1.4874 29 1 3.3604 1.8905 2.1698 30 1 5.8115 4.2048 0.5089 31 1 7.1216 5.3249 0.8720 32 1 3.0597 2.6722 -2.6653 33 1 1.9684 3.2380 -1.3781 34 1 4.3510 4.7529 -2.5351 35 1 2.6307 5.1404 -2.7767 36 1 3.3634 5.3109 -1.1635 37 1 5.7890 3.5896 -1.4166 38 1 5.9972 2.1038 -0.4588 39 1 6.4285 1.6000 -2.8139 40 1 4.9106 0.8115 -2.3215 41 1 4.8647 2.3078 -3.2844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187044659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:57 Heat of formation + Delta-G solvation = -49.436731 kcal Electronic energy + Delta-G solvation = -18785.755655 eV Core-core repulsion = 16086.505091 eV Total energy + Delta-G solvation = -2699.250563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47553 -37.97552 -35.95187 -34.00708 -32.29447 -32.17105 -30.99741 -26.50423 -26.21405 -24.36706 -24.00361 -23.57290 -22.18561 -19.41727 -19.10534 -17.79477 -16.97332 -16.49552 -16.16052 -15.85828 -15.51364 -15.30619 -14.78214 -14.21689 -14.05060 -13.84376 -13.64955 -13.25910 -13.05755 -12.92164 -12.85999 -12.69426 -12.46831 -12.24924 -12.18670 -12.09518 -11.91523 -11.78833 -11.48377 -11.34555 -11.25065 -10.71599 -10.70792 -10.22606 -9.00630 -8.36066 -5.27351 1.57016 1.66752 1.83335 2.63744 2.72276 3.40408 3.57385 3.68374 3.78681 4.05676 4.08776 4.22820 4.24515 4.26281 4.38515 4.45917 4.48502 4.53291 4.55539 4.62649 4.77433 4.86630 4.89272 4.97703 5.02746 5.05520 5.07059 5.12096 5.24392 5.25800 5.29829 5.35621 5.50149 5.50986 5.63550 5.66270 6.40447 6.53368 7.14378 8.06404 8.19004 9.15709 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.006964 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.565228 B = 4019.439151 C = 4485.214356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.380 6.380 4 C 0.093 3.907 5 H 0.089 0.911 6 C -0.184 4.184 7 C 0.172 3.828 8 H 0.055 0.945 9 N -0.731 5.731 10 C -0.327 4.327 11 H 0.058 0.942 12 C -0.103 4.103 13 N -0.975 5.975 14 Si 1.124 2.876 15 H -0.292 1.292 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.080 4.080 19 C -0.090 4.090 20 C -0.143 4.143 21 C -0.094 4.094 22 C -0.140 4.140 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.365 0.635 31 H 0.243 0.757 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.960 -13.427 -7.414 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.299 6.299 4 C 0.034 3.966 5 H 0.107 0.893 6 C -0.225 4.225 7 C 0.062 3.938 8 H 0.073 0.927 9 N -0.371 5.371 10 C -0.459 4.459 11 H 0.076 0.924 12 C -0.294 4.294 13 N -0.623 5.623 14 Si 0.950 3.050 15 H -0.218 1.218 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.200 4.200 21 C -0.132 4.132 22 C -0.197 4.197 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.198 0.802 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.569 -11.905 -6.587 16.634 hybrid contribution -0.106 -1.292 -0.435 1.367 sum -9.675 -13.197 -7.022 17.807 Atomic orbital electron populations 1.21747 0.92776 1.03359 1.02536 1.22742 0.96372 0.83027 1.00705 1.87868 1.19730 1.27817 1.94510 1.22806 0.81303 0.97247 0.95216 0.89280 1.24171 1.00149 1.00326 0.97894 1.21688 0.90222 0.87882 0.94014 0.92686 1.42525 1.10505 1.31191 1.52883 1.20386 0.98596 1.06343 1.20590 0.92429 1.27050 0.92617 1.05019 1.04700 1.70997 1.24872 1.33111 1.33341 0.82662 0.75214 0.73112 0.74043 1.21751 1.20711 1.20684 1.22559 0.95707 0.94864 0.95043 1.21223 0.98227 0.95358 0.97892 1.21651 1.00729 0.97183 1.00441 1.21113 0.93809 1.00038 0.98215 1.21732 1.02130 0.99745 0.96141 0.92077 0.88882 0.92904 0.91998 0.93295 0.90644 0.92794 0.80161 0.94685 0.90459 0.92061 0.93641 0.91978 0.95197 0.93411 0.92902 0.92003 0.91685 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.05 1.00 6.50 71.98 0.47 1.47 16 3 O -0.38 -11.07 8.89 -148.98 -1.32 -12.40 16 4 C 0.09 2.79 3.66 31.12 0.11 2.91 16 5 H 0.09 2.26 7.28 -2.38 -0.02 2.24 16 6 C -0.18 -6.86 7.36 31.12 0.23 -6.63 16 7 C 0.17 7.33 3.05 45.52 0.14 7.47 16 8 H 0.06 2.58 8.06 -2.38 -0.02 2.56 16 9 N -0.73 -37.73 5.29 -320.46 -1.69 -39.43 16 10 C -0.33 -19.04 9.97 84.03 0.84 -18.20 16 11 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 12 C -0.10 -6.11 5.50 84.86 0.47 -5.64 16 13 N -0.97 -61.96 13.70 21.65 0.30 -61.66 16 14 Si 1.12 53.64 29.92 68.60 2.05 55.69 16 15 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.08 -2.67 0.51 -51.66 -0.03 -2.69 16 19 C -0.09 -2.77 4.83 30.60 0.15 -2.62 16 20 C -0.14 -4.86 9.56 71.98 0.69 -4.17 16 21 C -0.09 -3.02 3.76 30.59 0.12 -2.91 16 22 C -0.14 -3.35 9.27 71.98 0.67 -2.68 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 2.88 7.61 -2.39 -0.02 2.86 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.36 19.35 4.83 -92.71 -0.45 18.90 16 31 H 0.24 15.37 6.77 -92.70 -0.63 14.74 16 32 H 0.08 2.01 6.47 -2.39 -0.02 2.00 16 33 H 0.06 1.97 7.14 -2.39 -0.02 1.96 16 34 H 0.04 1.55 7.25 -2.39 -0.02 1.53 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.03 1.23 7.47 -2.39 -0.02 1.22 16 37 H 0.05 1.80 6.61 -2.39 -0.02 1.78 16 38 H 0.05 1.77 7.31 -2.39 -0.02 1.75 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.34 7.47 -2.38 -0.02 1.32 16 41 H 0.06 1.40 6.80 -2.39 -0.02 1.39 16 Total: -1.00 -67.12 317.42 4.59 -62.52 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.68 Total: 30.80 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.59 Total: -35.53 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -1.40 Total: -101.09 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.32 Total: -12.40 kcal Atomic # 14 Polarization: 53.64 SS G_CDS: 2.05 Total: 55.69 kcal Total: -67.12 4.59 -62.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds