Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46846 * 2 1 4 4 C 1.42906 * 113.99619 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.84922 * 21.69028 * 4 3 2 6 6 C 1.53780 * 113.61432 * 250.49436 * 4 3 2 7 7 C 1.53776 * 87.08197 * 219.93620 * 6 4 3 8 8 H 1.08997 * 113.61195 * 270.80159 * 7 6 4 9 9 N 1.46497 * 113.61782 * 139.97806 * 7 6 4 10 10 C 1.36941 * 119.99947 * 104.50178 * 9 7 6 11 11 H 1.08001 * 120.00081 * 0.02562 * 10 9 7 12 12 C 1.38811 * 120.00108 * 180.02562 * 10 9 7 13 13 N 1.31617 * 120.00041 * 359.72835 * 12 10 9 14 14 Si 1.86795 * 119.99983 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47271 * 269.72456 * 14 12 10 16 16 H 1.48500 * 109.47332 * 29.72073 * 14 12 10 17 17 H 1.48501 * 109.47195 * 149.72531 * 14 12 10 18 18 C 1.53776 * 113.69047 * 152.95720 * 4 3 2 19 19 C 1.53006 * 113.61335 * 25.44381 * 18 4 3 20 20 C 1.52999 * 109.47125 * 43.22765 * 19 18 4 21 21 C 1.52996 * 113.61434 * 254.54103 * 18 4 3 22 22 C 1.52999 * 109.47162 * 77.13939 * 21 18 4 23 23 H 1.09005 * 109.46680 * 60.00068 * 1 2 3 24 24 H 1.08993 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46946 * 300.00765 * 1 2 3 26 26 H 1.09000 * 109.47362 * 239.99838 * 2 1 3 27 27 H 1.08998 * 109.46611 * 119.99505 * 2 1 3 28 28 H 1.08999 * 113.61645 * 105.38113 * 6 4 3 29 29 H 1.09004 * 113.61098 * 334.48480 * 6 4 3 30 30 H 0.96998 * 120.00233 * 284.50594 * 9 7 6 31 31 H 0.97005 * 119.99881 * 0.27278 * 13 12 10 32 32 H 1.09004 * 109.46957 * 163.22586 * 19 18 4 33 33 H 1.08996 * 109.47133 * 283.22569 * 19 18 4 34 34 H 1.09003 * 109.46850 * 185.48717 * 20 19 18 35 35 H 1.09001 * 109.47108 * 305.48455 * 20 19 18 36 36 H 1.08997 * 109.47344 * 65.48825 * 20 19 18 37 37 H 1.09004 * 109.47225 * 197.13796 * 21 18 4 38 38 H 1.08998 * 109.47401 * 317.13582 * 21 18 4 39 39 H 1.08999 * 109.47229 * 65.37397 * 22 21 18 40 40 H 1.09006 * 109.46709 * 185.37222 * 22 21 18 41 41 H 1.09001 * 109.47034 * 305.37058 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9267 0.5631 -0.3703 6 6 4.0073 1.9780 1.3289 7 6 4.9930 2.8060 0.4878 8 1 5.9164 2.2774 0.2513 9 7 5.2273 4.1526 1.0150 10 6 6.3967 4.4384 1.6678 11 1 7.1464 3.6712 1.7935 12 6 6.6186 5.7142 2.1678 13 7 5.7073 6.6506 2.0099 14 14 8.2140 6.1042 3.0576 15 1 8.0486 5.8395 4.5094 16 1 9.3026 5.2494 2.5196 17 1 8.5592 7.5337 2.8512 18 6 3.9482 2.7591 -0.6396 19 6 2.9411 3.9100 -0.5902 20 6 2.2843 3.9540 0.7909 21 6 4.5549 2.5580 -2.0296 22 6 3.4331 2.3921 -3.0567 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.4873 1.2041 1.9279 29 1 3.3060 2.5843 1.9023 30 1 4.5542 4.8417 0.9018 31 1 4.8789 6.4481 1.5476 32 1 3.4565 4.8520 -0.7776 33 1 2.1764 3.7565 -1.3515 34 1 1.4988 4.7097 0.7958 35 1 1.8524 2.9795 1.0191 36 1 3.0337 4.2041 1.5419 37 1 5.1610 3.4256 -2.2906 38 1 5.1804 1.6654 -2.0274 39 1 2.8653 3.3198 -3.1277 40 1 3.8634 2.1541 -4.0295 41 1 2.7713 1.5841 -2.7446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187044681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -14.427944 kcal Electronic energy + Delta-G solvation = -18970.313410 eV Core-core repulsion = 16272.580942 eV Total energy + Delta-G solvation = -2697.732468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34537 -36.71934 -33.98541 -32.38082 -31.01738 -30.91518 -29.33304 -25.81035 -24.11559 -22.86686 -22.49893 -22.03945 -20.45456 -18.22332 -17.33705 -16.74195 -15.55053 -15.06146 -14.79589 -14.22727 -13.90281 -13.60120 -13.11749 -12.77391 -12.76728 -12.47075 -12.38756 -12.13850 -11.99325 -11.51713 -11.32788 -11.25235 -11.14782 -10.73545 -10.68070 -10.43601 -10.23519 -10.10938 -9.98489 -9.68073 -9.32250 -9.08444 -8.89034 -8.79101 -6.96016 -6.06999 -3.05829 3.53541 3.58435 3.72386 3.90094 4.71157 4.92295 5.03395 5.09699 5.15029 5.28369 5.39016 5.43657 5.46576 5.54091 5.60222 5.70533 5.81021 5.84116 5.89308 5.93074 5.98245 6.06576 6.10652 6.19217 6.26059 6.28880 6.32887 6.49451 6.58250 6.60934 6.70029 6.83173 6.89094 7.02865 7.20608 7.62648 7.86047 8.79513 9.27582 10.13898 10.30280 11.41179 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.006486 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.956617 B = 4315.921353 C = 4539.957319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.072 3.928 5 H 0.075 0.925 6 C -0.200 4.200 7 C 0.180 3.820 8 H 0.073 0.927 9 N -0.720 5.720 10 C -0.333 4.333 11 H 0.064 0.936 12 C -0.045 4.045 13 N -0.944 5.944 14 Si 1.082 2.918 15 H -0.296 1.296 16 H -0.295 1.295 17 H -0.288 1.288 18 C -0.086 4.086 19 C -0.082 4.082 20 C -0.173 4.173 21 C -0.107 4.107 22 C -0.146 4.146 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.375 0.625 31 H 0.255 0.745 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 -12.474 -6.645 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.014 3.986 5 H 0.093 0.907 6 C -0.241 4.241 7 C 0.068 3.932 8 H 0.091 0.909 9 N -0.362 5.362 10 C -0.464 4.464 11 H 0.082 0.918 12 C -0.243 4.243 13 N -0.590 5.590 14 Si 0.913 3.087 15 H -0.224 1.224 16 H -0.222 1.222 17 H -0.214 1.214 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.230 4.230 21 C -0.144 4.144 22 C -0.204 4.204 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.212 0.788 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.760 -11.223 -5.832 14.341 hybrid contribution -0.847 -1.438 -0.806 1.854 sum -7.607 -12.661 -6.638 16.194 Atomic orbital electron populations 1.21726 0.94333 1.01648 1.02965 1.22437 0.95170 0.85414 0.99433 1.87993 1.21306 1.24426 1.94473 1.23646 0.80060 0.96833 0.98099 0.90724 1.24825 1.01353 1.00836 0.97086 1.21272 0.93369 0.87613 0.90974 0.90897 1.42521 1.20024 1.07029 1.66635 1.20142 0.95790 0.98151 1.32309 0.91802 1.25744 1.05209 0.91843 1.01468 1.70847 1.08603 1.34288 1.45222 0.83199 0.74144 0.75650 0.75661 1.22385 1.22218 1.21442 1.22747 0.96867 0.94317 0.94828 1.20911 0.96533 0.96647 0.97837 1.22506 1.00470 1.02243 0.97760 1.21429 0.97461 1.01464 0.94061 1.21750 0.98885 1.01737 0.97982 0.92074 0.91713 0.91965 0.94054 0.93889 0.93177 0.87730 0.78849 0.93376 0.92254 0.92309 0.94548 0.90023 0.90900 0.91598 0.92568 0.92667 0.93672 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.05 0.62 6.51 37.16 0.24 0.86 16 3 O -0.36 -5.44 7.33 -35.23 -0.26 -5.70 16 4 C 0.07 1.13 3.41 -25.92 -0.09 1.04 16 5 H 0.07 1.07 7.79 -51.93 -0.40 0.66 16 6 C -0.20 -3.69 7.02 -25.92 -0.18 -3.87 16 7 C 0.18 3.69 3.86 -67.12 -0.26 3.43 16 8 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 9 N -0.72 -18.08 4.65 -52.64 -0.24 -18.33 16 10 C -0.33 -9.40 9.98 -15.06 -0.15 -9.55 16 11 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 12 C -0.05 -1.32 5.50 -17.43 -0.10 -1.41 16 13 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 14 Si 1.08 26.21 29.92 -169.99 -5.09 21.12 16 15 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 C -0.09 -1.47 0.94 -153.70 -0.15 -1.62 16 19 C -0.08 -1.45 4.21 -26.73 -0.11 -1.57 16 20 C -0.17 -3.17 7.77 37.16 0.29 -2.88 16 21 C -0.11 -1.64 5.40 -26.73 -0.14 -1.78 16 22 C -0.15 -1.93 9.27 37.16 0.34 -1.59 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 2.07 4.50 -51.93 -0.23 1.84 16 30 H 0.37 9.64 3.35 -40.82 -0.14 9.50 16 31 H 0.25 7.85 6.77 -40.82 -0.28 7.58 16 32 H 0.06 1.16 7.39 -51.93 -0.38 0.78 16 33 H 0.06 0.96 6.52 -51.93 -0.34 0.62 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.45 4.26 -51.93 -0.22 1.22 16 36 H 0.07 1.55 4.57 -51.93 -0.24 1.31 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 39 H 0.05 0.74 6.83 -51.93 -0.35 0.39 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.68 7.93 -51.93 -0.41 0.27 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -30.53 308.23 -6.95 -37.48 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.85 Total: 9.47 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 0.08 Total: -20.06 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.52 Total: -46.97 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.26 Total: -5.70 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.09 Total: 21.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.53 -6.95 -37.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.054 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds