Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42904 * 109.46846 * 2 1 4 4 C 1.42906 * 113.99619 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.84922 * 21.69028 * 4 3 2 6 6 C 1.53780 * 113.61432 * 250.49436 * 4 3 2 7 7 C 1.53776 * 87.08197 * 219.93620 * 6 4 3 8 8 H 1.08997 * 113.61195 * 270.80159 * 7 6 4 9 9 N 1.46497 * 113.61782 * 139.97806 * 7 6 4 10 10 C 1.36941 * 119.99947 * 104.50178 * 9 7 6 11 11 H 1.08001 * 120.00081 * 0.02562 * 10 9 7 12 12 C 1.38811 * 120.00108 * 180.02562 * 10 9 7 13 13 N 1.31617 * 120.00041 * 359.72835 * 12 10 9 14 14 Si 1.86795 * 119.99983 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47271 * 269.72456 * 14 12 10 16 16 H 1.48500 * 109.47332 * 29.72073 * 14 12 10 17 17 H 1.48501 * 109.47195 * 149.72531 * 14 12 10 18 18 C 1.53776 * 113.69047 * 152.95720 * 4 3 2 19 19 C 1.53006 * 113.61335 * 25.44381 * 18 4 3 20 20 C 1.52999 * 109.47125 * 43.22765 * 19 18 4 21 21 C 1.52996 * 113.61434 * 254.54103 * 18 4 3 22 22 C 1.52999 * 109.47162 * 77.13939 * 21 18 4 23 23 H 1.09005 * 109.46680 * 60.00068 * 1 2 3 24 24 H 1.08993 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46946 * 300.00765 * 1 2 3 26 26 H 1.09000 * 109.47362 * 239.99838 * 2 1 3 27 27 H 1.08998 * 109.46611 * 119.99505 * 2 1 3 28 28 H 1.08999 * 113.61645 * 105.38113 * 6 4 3 29 29 H 1.09004 * 113.61098 * 334.48480 * 6 4 3 30 30 H 0.96998 * 120.00233 * 284.50594 * 9 7 6 31 31 H 0.97005 * 119.99881 * 0.27278 * 13 12 10 32 32 H 1.09004 * 109.46957 * 163.22586 * 19 18 4 33 33 H 1.08996 * 109.47133 * 283.22569 * 19 18 4 34 34 H 1.09003 * 109.46850 * 185.48717 * 20 19 18 35 35 H 1.09001 * 109.47108 * 305.48455 * 20 19 18 36 36 H 1.08997 * 109.47344 * 65.48825 * 20 19 18 37 37 H 1.09004 * 109.47225 * 197.13796 * 21 18 4 38 38 H 1.08998 * 109.47401 * 317.13582 * 21 18 4 39 39 H 1.08999 * 109.47229 * 65.37397 * 22 21 18 40 40 H 1.09006 * 109.46709 * 185.37222 * 22 21 18 41 41 H 1.09001 * 109.47034 * 305.37058 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9267 0.5631 -0.3703 6 6 4.0073 1.9780 1.3289 7 6 4.9930 2.8060 0.4878 8 1 5.9164 2.2774 0.2513 9 7 5.2273 4.1526 1.0150 10 6 6.3967 4.4384 1.6678 11 1 7.1464 3.6712 1.7935 12 6 6.6186 5.7142 2.1678 13 7 5.7073 6.6506 2.0099 14 14 8.2140 6.1042 3.0576 15 1 8.0486 5.8395 4.5094 16 1 9.3026 5.2494 2.5196 17 1 8.5592 7.5337 2.8512 18 6 3.9482 2.7591 -0.6396 19 6 2.9411 3.9100 -0.5902 20 6 2.2843 3.9540 0.7909 21 6 4.5549 2.5580 -2.0296 22 6 3.4331 2.3921 -3.0567 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.4873 1.2041 1.9279 29 1 3.3060 2.5843 1.9023 30 1 4.5542 4.8417 0.9018 31 1 4.8789 6.4481 1.5476 32 1 3.4565 4.8520 -0.7776 33 1 2.1764 3.7565 -1.3515 34 1 1.4988 4.7097 0.7958 35 1 1.8524 2.9795 1.0191 36 1 3.0337 4.2041 1.5419 37 1 5.1610 3.4256 -2.2906 38 1 5.1804 1.6654 -2.0274 39 1 2.8653 3.3198 -3.1277 40 1 3.8634 2.1541 -4.0295 41 1 2.7713 1.5841 -2.7446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187044681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -32.160305 kcal Electronic energy + Delta-G solvation = -18971.082343 eV Core-core repulsion = 16272.580942 eV Total energy + Delta-G solvation = -2698.501401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.77342 -37.92839 -35.90665 -33.74360 -32.45762 -32.15434 -31.05267 -27.14541 -26.08357 -24.15248 -23.72476 -23.41863 -21.91668 -19.83647 -19.24434 -18.04492 -16.92627 -16.44742 -16.14671 -15.74932 -15.49633 -15.09414 -14.72559 -14.16703 -14.09163 -13.72707 -13.56481 -13.38942 -13.21178 -12.86555 -12.75792 -12.66671 -12.44349 -12.35354 -12.16352 -11.92800 -11.78200 -11.64347 -11.50988 -11.33400 -10.92423 -10.82395 -10.68970 -10.14881 -9.02458 -8.37172 -5.28916 1.57634 1.68626 1.82654 2.68828 2.81478 3.39920 3.57329 3.70940 3.82753 4.02827 4.09070 4.23485 4.25187 4.29156 4.39324 4.41942 4.55414 4.56876 4.60313 4.63921 4.75732 4.84448 4.93433 5.01369 5.07209 5.09571 5.09820 5.16293 5.23275 5.28929 5.37110 5.39649 5.47666 5.54346 5.63134 5.71416 6.47370 6.51783 7.13650 8.06139 8.18462 9.14486 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.006486 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.956617 B = 4315.921353 C = 4539.957319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.375 6.375 4 C 0.096 3.904 5 H 0.100 0.900 6 C -0.199 4.199 7 C 0.158 3.842 8 H 0.069 0.931 9 N -0.734 5.734 10 C -0.330 4.330 11 H 0.065 0.935 12 C -0.107 4.107 13 N -0.977 5.977 14 Si 1.130 2.870 15 H -0.286 1.286 16 H -0.273 1.273 17 H -0.294 1.294 18 C -0.080 4.080 19 C -0.077 4.077 20 C -0.164 4.164 21 C -0.105 4.105 22 C -0.139 4.139 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.368 0.632 31 H 0.242 0.758 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 -14.771 -7.589 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 O -0.295 6.295 4 C 0.037 3.963 5 H 0.117 0.883 6 C -0.240 4.240 7 C 0.048 3.952 8 H 0.087 0.913 9 N -0.376 5.376 10 C -0.462 4.462 11 H 0.083 0.917 12 C -0.297 4.297 13 N -0.625 5.625 14 Si 0.955 3.045 15 H -0.213 1.213 16 H -0.198 1.198 17 H -0.221 1.221 18 C -0.081 4.081 19 C -0.114 4.114 20 C -0.220 4.220 21 C -0.143 4.143 22 C -0.196 4.196 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.204 0.796 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.125 -13.589 -6.798 16.782 hybrid contribution -0.802 -0.825 -0.528 1.266 sum -7.927 -14.414 -7.326 18.007 Atomic orbital electron populations 1.21736 0.93015 1.03124 1.02488 1.22712 0.96271 0.83807 1.00465 1.87959 1.20335 1.26831 1.94345 1.23355 0.81010 0.96691 0.95218 0.88262 1.24676 1.00608 1.00399 0.98282 1.21609 0.94501 0.85742 0.93303 0.91271 1.42677 1.19097 1.08815 1.67019 1.20496 0.96551 0.98021 1.31092 0.91697 1.27155 1.07660 0.92179 1.02745 1.70961 1.09032 1.35245 1.47291 0.82585 0.71358 0.75388 0.75146 1.21346 1.19824 1.22058 1.22619 0.95484 0.95050 0.94981 1.20858 0.96911 0.95762 0.97893 1.22396 0.99613 1.02867 0.97164 1.21423 0.98208 1.01254 0.93415 1.21682 0.98031 1.01757 0.98129 0.92153 0.89292 0.92850 0.92313 0.93497 0.92686 0.89383 0.79588 0.94789 0.94973 0.90366 0.94028 0.89025 0.94250 0.93635 0.91088 0.93237 0.91761 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.04 0.89 6.51 71.98 0.47 1.35 16 3 O -0.38 -10.24 7.33 -148.98 -1.09 -11.34 16 4 C 0.10 2.78 3.41 31.12 0.11 2.89 16 5 H 0.10 2.46 7.79 -2.39 -0.02 2.44 16 6 C -0.20 -7.22 7.02 31.12 0.22 -7.00 16 7 C 0.16 6.50 3.86 45.52 0.18 6.68 16 8 H 0.07 2.85 8.08 -2.39 -0.02 2.83 16 9 N -0.73 -37.94 4.65 -320.46 -1.49 -39.43 16 10 C -0.33 -18.98 9.98 84.03 0.84 -18.14 16 11 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 12 C -0.11 -6.33 5.50 84.86 0.47 -5.86 16 13 N -0.98 -62.76 13.70 21.65 0.30 -62.46 16 14 Si 1.13 53.26 29.92 68.60 2.05 55.31 16 15 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 C -0.08 -2.66 0.94 -51.66 -0.05 -2.70 16 19 C -0.08 -2.72 4.21 30.60 0.13 -2.59 16 20 C -0.16 -6.07 7.77 71.98 0.56 -5.51 16 21 C -0.11 -3.05 5.40 30.59 0.17 -2.89 16 22 C -0.14 -3.26 9.27 71.98 0.67 -2.59 16 23 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 3.52 4.50 -2.38 -0.01 3.51 16 30 H 0.37 19.86 3.35 -92.71 -0.31 19.55 16 31 H 0.24 15.61 6.77 -92.70 -0.63 14.98 16 32 H 0.03 1.30 7.39 -2.38 -0.02 1.28 16 33 H 0.08 2.46 6.52 -2.39 -0.02 2.44 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 3.19 4.26 -2.39 -0.01 3.18 16 36 H 0.04 1.73 4.57 -2.39 -0.01 1.72 16 37 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 39 H 0.05 1.21 6.83 -2.39 -0.02 1.20 16 40 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.34 7.93 -2.39 -0.02 1.32 16 Total: -1.00 -66.78 308.23 5.08 -61.70 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.83 Total: 34.33 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 4.49 Total: -38.11 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -1.19 Total: -101.89 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.09 Total: -11.34 kcal Atomic # 14 Polarization: 53.26 SS G_CDS: 2.05 Total: 55.31 kcal Total: -66.78 5.08 -61.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.538 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds