Wall clock time and date at job start Sun Mar 29 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53010 * 109.47150 * 2 1 4 4 H 1.08995 * 109.47010 * 54.54560 * 3 2 1 5 5 C 1.50691 * 109.47288 * 174.54941 * 3 2 1 6 6 H 1.08001 * 120.00316 * 116.15240 * 5 3 2 7 7 C 1.37879 * 120.00318 * 296.15390 * 5 3 2 8 8 N 1.31519 * 119.99585 * 353.55780 * 7 5 3 9 9 Si 1.86800 * 120.00449 * 173.55921 * 7 5 3 10 10 H 1.48498 * 109.46987 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46859 * 299.99914 * 9 7 5 12 12 H 1.48505 * 109.46916 * 59.99830 * 9 7 5 13 13 N 1.46898 * 109.46567 * 294.55048 * 3 2 1 14 14 C 1.46906 * 110.99956 * 154.33345 * 13 3 2 15 15 C 1.53783 * 113.61343 * 255.57127 * 14 13 3 16 16 C 1.53785 * 87.07849 * 220.01832 * 15 14 13 17 17 O 1.42899 * 113.61006 * 270.88432 * 16 15 14 18 18 C 1.42908 * 113.99747 * 247.49810 * 17 16 15 19 19 C 1.52999 * 109.47011 * 150.00422 * 18 17 16 20 20 C 1.53005 * 109.47037 * 270.00373 * 18 17 16 21 21 C 1.53783 * 87.08363 * 25.43220 * 16 15 14 22 22 H 1.08996 * 109.47375 * 65.10557 * 1 2 3 23 23 H 1.09004 * 109.47395 * 185.10780 * 1 2 3 24 24 H 1.09001 * 109.47398 * 305.10854 * 1 2 3 25 25 H 1.08998 * 109.47478 * 240.00323 * 2 1 3 26 26 H 1.08999 * 109.47406 * 119.99552 * 2 1 3 27 27 H 0.97002 * 120.00377 * 355.15105 * 8 7 5 28 28 H 1.00906 * 111.00157 * 278.28349 * 13 3 2 29 29 H 1.09000 * 112.84615 * 26.87983 * 14 13 3 30 30 H 1.08994 * 113.61352 * 334.56763 * 15 14 13 31 31 H 1.08994 * 113.61080 * 105.46949 * 15 14 13 32 32 H 1.08992 * 113.68803 * 139.99610 * 16 15 14 33 33 H 1.08999 * 109.47091 * 30.00442 * 18 17 16 34 34 H 1.08999 * 109.47177 * 60.00073 * 19 18 17 35 35 H 1.08993 * 109.47173 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47043 * 300.00202 * 19 18 17 37 37 H 1.09004 * 109.46534 * 300.00034 * 20 18 17 38 38 H 1.09000 * 109.47045 * 60.00203 * 20 18 17 39 39 H 1.08993 * 109.46978 * 180.02562 * 20 18 17 40 40 H 1.08992 * 113.61386 * 220.02225 * 21 16 15 41 41 H 1.09003 * 113.68965 * 89.12300 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5991 1.9838 0.8371 5 6 3.5408 1.4448 0.1350 6 1 4.1545 1.8310 -0.6655 7 6 4.1308 0.9537 1.2803 8 7 3.3852 0.6012 2.3048 9 14 5.9890 0.7889 1.3770 10 1 6.3689 0.2413 2.7040 11 1 6.4608 -0.1285 0.3088 12 1 6.6144 2.1235 1.1952 13 7 1.6606 2.0959 -1.2598 14 6 1.5651 3.5520 -1.0898 15 6 0.1189 4.0710 -1.0247 16 6 0.5896 5.2577 -1.8822 17 8 1.0730 6.3621 -1.1149 18 6 0.2500 7.5279 -1.1919 19 6 0.3606 8.3173 0.1140 20 6 0.7137 8.4033 -2.3579 21 6 1.7042 4.3363 -2.4053 22 1 -0.3634 0.4326 -0.9321 23 1 -0.3634 -1.0236 0.0915 24 1 -0.3634 0.5910 0.8407 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 2.4272 0.7519 2.2821 28 1 2.3062 1.8598 -1.9984 29 1 2.2016 3.9272 -0.2884 30 1 -0.5997 3.4255 -1.5295 31 1 -0.1980 4.3558 -0.0215 32 1 -0.1262 5.5556 -2.6482 33 1 -0.7867 7.2309 -1.3503 34 1 1.3973 8.6143 0.2724 35 1 -0.2668 9.2067 0.0551 36 1 0.0303 7.6936 0.9447 37 1 1.7504 8.7002 -2.1994 38 1 0.6349 7.8409 -3.2883 39 1 0.0863 9.2927 -2.4164 40 1 2.6668 4.8351 -2.5164 41 1 1.4202 3.7627 -3.2876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189580077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:12 Heat of formation + Delta-G solvation = -64.396730 kcal Electronic energy + Delta-G solvation = -18072.309593 eV Core-core repulsion = 15372.410316 eV Total energy + Delta-G solvation = -2699.899277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66114 -38.43209 -36.91877 -33.92009 -33.08700 -31.83607 -28.14928 -27.73368 -26.64168 -25.14712 -23.91868 -22.35689 -21.67036 -20.38649 -19.14103 -17.80976 -16.84819 -16.33577 -15.95481 -15.70790 -15.38921 -15.10870 -15.03631 -14.32013 -14.02845 -13.93516 -13.56833 -13.32987 -13.14041 -13.12400 -12.86071 -12.62613 -12.54211 -12.31240 -12.26596 -11.99796 -11.94290 -11.68987 -11.57087 -11.42634 -11.01670 -10.81685 -10.47815 -10.37314 -9.15459 -8.51261 -6.35091 1.48815 1.55689 1.75031 2.54480 2.64572 3.16179 3.60670 3.65727 3.73570 3.98634 4.03673 4.13896 4.28951 4.30864 4.37708 4.42604 4.53562 4.72671 4.73558 4.79170 4.84713 4.89295 4.90438 4.94453 4.94846 5.05163 5.20783 5.20952 5.25692 5.31891 5.33461 5.41092 5.49986 5.67730 5.96338 6.01420 6.43475 6.53285 6.56814 6.82183 7.46517 8.74779 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.005893 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.233227 B = 4750.277202 C = 5356.396830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.209 3.791 4 H -0.014 1.014 5 C -0.634 4.634 6 H 0.041 0.959 7 C -0.024 4.024 8 N -0.930 5.930 9 Si 1.107 2.893 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.279 1.279 13 N -0.658 5.658 14 C 0.064 3.936 15 C -0.138 4.138 16 C 0.079 3.921 17 O -0.389 6.389 18 C 0.070 3.930 19 C -0.150 4.150 20 C -0.169 4.169 21 C -0.131 4.131 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.330 0.670 29 H 0.024 0.976 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 12.304 -10.145 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.099 3.901 4 H 0.004 0.996 5 C -0.673 4.673 6 H 0.059 0.941 7 C -0.223 4.223 8 N -0.567 5.567 9 Si 0.929 3.071 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.287 5.287 14 C -0.046 4.046 15 C -0.177 4.177 16 C 0.020 3.980 17 O -0.309 6.309 18 C 0.013 3.987 19 C -0.207 4.207 20 C -0.226 4.226 21 C -0.169 4.169 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.043 0.957 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.165 11.665 -8.975 16.369 hybrid contribution -0.218 0.607 -0.421 0.770 sum -7.382 12.272 -9.397 17.129 Atomic orbital electron populations 1.21555 0.95368 1.00101 1.01174 1.21406 0.95446 0.98029 0.99375 1.19063 0.92117 0.91272 0.87630 0.99576 1.22982 0.94038 1.45678 1.04619 0.94098 1.27052 1.10338 0.92913 0.92039 1.70892 1.07645 1.45947 1.32211 0.83070 0.70282 0.77219 0.76508 1.20882 1.19475 1.20451 1.60954 1.53418 1.06685 1.07631 1.22743 0.96858 0.87982 0.97054 1.23540 0.96870 0.97292 1.00001 1.22883 0.96285 0.85563 0.93243 1.87960 1.50893 1.21995 1.70070 1.22413 0.94277 0.85423 0.96637 1.21895 1.02757 1.00192 0.95870 1.22281 1.02208 1.00407 0.97725 1.23410 0.99237 0.96781 0.97438 0.91604 0.93038 0.95117 0.93870 0.94780 0.92991 0.85261 0.95743 0.87787 0.93499 0.87916 0.90965 0.92802 0.88684 0.93281 0.92865 0.92223 0.89590 0.91993 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.74 71.98 0.70 -4.23 16 2 C -0.10 -4.99 5.29 30.59 0.16 -4.83 16 3 C 0.21 10.74 1.47 44.17 0.07 10.81 16 4 H -0.01 -0.80 7.26 -2.39 -0.02 -0.82 16 5 C -0.63 -36.13 8.40 25.60 0.22 -35.91 16 6 H 0.04 2.32 7.71 -2.91 -0.02 2.30 16 7 C -0.02 -1.38 5.20 84.65 0.44 -0.94 16 8 N -0.93 -57.44 12.77 21.45 0.27 -57.16 16 9 Si 1.11 51.49 29.91 68.60 2.05 53.54 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.66 -27.98 5.86 -470.60 -2.76 -30.74 16 14 C 0.06 2.54 3.77 45.44 0.17 2.72 16 15 C -0.14 -4.52 7.71 31.12 0.24 -4.28 16 16 C 0.08 2.16 4.20 31.12 0.13 2.29 16 17 O -0.39 -11.80 9.92 -148.98 -1.48 -13.27 16 18 C 0.07 1.51 3.22 30.60 0.10 1.61 16 19 C -0.15 -3.03 9.56 71.98 0.69 -2.34 16 20 C -0.17 -2.93 9.53 71.98 0.69 -2.25 16 21 C -0.13 -3.96 7.51 31.12 0.23 -3.73 16 22 H 0.06 2.41 7.91 -2.39 -0.02 2.40 16 23 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.03 1.83 6.14 -2.39 -0.01 1.81 16 27 H 0.26 16.29 6.15 -92.71 -0.57 15.72 16 28 H 0.33 13.80 8.24 -89.69 -0.74 13.06 16 29 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 30 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.14 7.77 -2.39 -0.02 2.12 16 33 H 0.07 1.36 7.72 -2.39 -0.02 1.34 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -65.86 327.97 2.35 -63.50 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.43 Total: 25.22 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 3.83 Total: -41.09 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -2.48 Total: -87.90 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.48 Total: -13.27 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Total: -65.86 2.35 -63.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189580077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.894 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds