Wall clock time and date at job start Sun Mar 29 2020 23:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 H 1.09000 * 109.47021 * 305.54018 * 3 2 1 5 5 C 1.50697 * 109.47215 * 185.54127 * 3 2 1 6 6 H 1.08007 * 120.00201 * 239.99978 * 5 3 2 7 7 C 1.37875 * 120.00258 * 59.99743 * 5 3 2 8 8 N 1.31516 * 119.99742 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00378 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46997 * 59.99962 * 9 7 5 11 11 H 1.48496 * 109.47354 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46745 * 300.00084 * 9 7 5 13 13 N 1.46898 * 109.47323 * 65.53816 * 3 2 1 14 14 C 1.46899 * 111.00437 * 254.53236 * 13 3 2 15 15 C 1.53786 * 113.61203 * 255.24754 * 14 13 3 16 16 C 1.53957 * 87.01552 * 220.04557 * 15 14 13 17 17 O 1.42898 * 113.74295 * 139.94328 * 16 15 14 18 18 C 1.42904 * 114.00083 * 112.39751 * 17 16 15 19 19 C 1.53001 * 109.46983 * 90.00142 * 18 17 16 20 20 C 1.52994 * 109.47162 * 209.99966 * 18 17 16 21 21 C 1.53777 * 113.61689 * 157.63578 * 14 13 3 22 22 H 1.08992 * 109.47445 * 295.50285 * 1 2 3 23 23 H 1.09006 * 109.46783 * 55.50577 * 1 2 3 24 24 H 1.09000 * 109.47171 * 175.50199 * 1 2 3 25 25 H 1.09001 * 109.47264 * 239.99632 * 2 1 3 26 26 H 1.09001 * 109.46984 * 119.99404 * 2 1 3 27 27 H 0.97001 * 119.99883 * 179.97438 * 8 7 5 28 28 H 1.00906 * 110.99775 * 18.48903 * 13 3 2 29 29 H 1.08996 * 112.84570 * 26.43315 * 14 13 3 30 30 H 1.09001 * 113.61446 * 334.55934 * 15 14 13 31 31 H 1.08994 * 113.61754 * 105.46891 * 15 14 13 32 32 H 1.09004 * 113.53346 * 270.80910 * 16 15 14 33 33 H 1.09002 * 109.46835 * 330.00141 * 18 17 16 34 34 H 1.08997 * 109.47148 * 59.99859 * 19 18 17 35 35 H 1.09000 * 109.47332 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47001 * 299.99906 * 19 18 17 37 37 H 1.08997 * 109.47424 * 60.00662 * 20 18 17 38 38 H 1.08998 * 109.47255 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.47388 * 299.99836 * 20 18 17 40 40 H 1.09000 * 113.61677 * 254.52593 * 21 14 13 41 41 H 1.08998 * 113.61306 * 25.43600 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 3.5407 1.4447 -0.1372 6 1 4.1530 1.8868 0.6349 7 6 4.1323 0.8822 -1.2484 8 7 3.3868 0.3442 -2.1888 9 14 5.9926 0.8843 -1.4181 10 1 6.5944 0.1460 -0.2789 11 1 6.3741 0.2250 -2.6928 12 1 6.4880 2.2843 -1.4178 13 7 1.6626 2.0953 1.2606 14 6 0.5556 3.0387 1.0542 15 6 0.9920 4.5132 1.0688 16 6 -0.2968 4.8032 1.8595 17 8 -0.1240 5.7532 2.9130 18 6 -0.8022 6.9921 2.6954 19 6 -2.2132 6.9109 3.2815 20 6 -0.0305 8.1227 3.3788 21 6 -0.2426 3.3412 2.3333 22 1 -0.3634 0.4424 0.9274 23 1 -0.3633 0.5820 -0.8470 24 1 -0.3633 -1.0245 -0.0806 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8029 -0.0511 -2.9707 28 1 1.4290 1.4124 1.9657 29 1 -0.0698 2.7770 0.2008 30 1 1.9036 4.6932 1.6387 31 1 1.0118 4.9726 0.0806 32 1 -1.1555 5.0253 1.2258 33 1 -0.8640 7.1894 1.6252 34 1 -2.1514 6.7135 4.3516 35 1 -2.7307 7.8557 3.1152 36 1 -2.7630 6.1054 2.7946 37 1 0.9747 8.1807 2.9613 38 1 -0.5475 9.0678 3.2125 39 1 0.0313 7.9254 4.4490 40 1 -1.2181 2.8559 2.3643 41 1 0.3309 3.2002 3.2494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189580091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:14 Heat of formation + Delta-G solvation = -40.992048 kcal Electronic energy + Delta-G solvation = -17898.916771 eV Core-core repulsion = 15200.032396 eV Total energy + Delta-G solvation = -2698.884374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.29059 -37.13041 -35.09513 -32.34372 -31.68369 -29.78902 -27.33752 -26.53406 -25.25400 -23.30995 -22.16788 -21.22975 -19.76659 -19.04532 -16.94992 -16.17658 -15.30576 -14.99802 -14.84643 -14.44319 -13.82626 -13.67665 -13.29768 -12.85913 -12.56617 -12.44623 -12.31256 -12.00100 -11.94181 -11.57716 -11.24287 -11.20112 -11.02596 -10.93925 -10.70521 -10.55353 -10.51311 -10.10976 -9.97170 -9.69935 -9.57192 -9.17259 -8.98277 -8.27531 -7.15450 -5.91990 -3.94665 3.38472 3.41916 3.45988 3.79693 4.49734 4.78606 4.89981 5.04916 5.06065 5.14429 5.18024 5.35620 5.39616 5.42063 5.46902 5.66633 5.73707 5.75879 5.86570 6.02410 6.08081 6.12429 6.14680 6.16041 6.27081 6.40307 6.43943 6.65067 6.71787 6.83175 7.00520 7.22894 7.45513 7.53206 7.80155 7.98134 8.37963 8.62960 8.68982 9.13204 9.70064 11.13920 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.005087 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.959369 B = 5503.110720 C = 6185.321789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.027 0.973 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.668 5.668 14 C 0.070 3.930 15 C -0.137 4.137 16 C 0.060 3.940 17 O -0.367 6.367 18 C 0.078 3.922 19 C -0.174 4.174 20 C -0.149 4.149 21 C -0.139 4.139 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.100 0.900 26 H 0.036 0.964 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 9.704 7.633 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.045 0.955 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.298 5.298 14 C -0.041 4.041 15 C -0.175 4.175 16 C 0.002 3.998 17 O -0.286 6.286 18 C 0.020 3.980 19 C -0.231 4.231 20 C -0.206 4.206 21 C -0.177 4.177 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.118 0.882 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.648 10.056 7.565 15.857 hybrid contribution 0.006 -0.650 -0.606 0.888 sum -9.642 9.406 6.959 15.161 Atomic orbital electron populations 1.21876 0.99552 0.99482 0.99587 1.22210 0.91460 1.01932 1.03003 1.19264 0.95443 0.88787 0.85565 0.95540 1.21227 0.91343 1.35684 1.04507 0.91996 1.24961 0.98056 0.95735 0.95922 1.69863 1.34721 1.39803 1.09610 0.86599 0.85853 0.78136 0.77004 1.20399 1.21567 1.20399 1.60847 1.35496 1.21535 1.11941 1.22665 0.92062 0.93983 0.95398 1.23581 0.98038 0.96485 0.99428 1.23680 0.98085 0.88609 0.89436 1.87998 1.72219 1.24156 1.44230 1.22078 0.91693 0.85439 0.98779 1.22324 0.96900 1.01743 1.02181 1.21851 1.00765 0.96511 1.01519 1.23482 1.00153 0.94198 0.99910 0.94805 0.93876 0.94641 0.88199 0.94557 0.93136 0.85760 0.91929 0.88664 0.92258 0.90340 0.92398 0.91930 0.92056 0.92597 0.91877 0.91681 0.91957 0.92019 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.06 37.16 0.34 -2.52 16 2 C -0.15 -3.43 5.07 -26.73 -0.14 -3.56 16 3 C 0.22 5.38 2.12 -68.87 -0.15 5.24 16 4 H 0.03 0.73 7.38 -51.93 -0.38 0.35 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.73 11.29 55.43 0.63 -25.11 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.67 -14.14 6.11 -100.11 -0.61 -14.75 16 14 C 0.07 1.26 3.14 -66.90 -0.21 1.05 16 15 C -0.14 -2.35 7.73 -25.82 -0.20 -2.55 16 16 C 0.06 0.87 4.13 -25.83 -0.11 0.76 16 17 O -0.37 -5.34 10.00 -35.23 -0.35 -5.69 16 18 C 0.08 0.88 3.22 -26.73 -0.09 0.80 16 19 C -0.17 -1.67 9.53 37.16 0.35 -1.32 16 20 C -0.15 -1.47 9.56 37.15 0.36 -1.12 16 21 C -0.14 -2.10 7.51 -25.92 -0.19 -2.30 16 22 H 0.03 0.59 7.15 -51.93 -0.37 0.22 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 26 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.32 6.48 7.64 -39.29 -0.30 6.18 16 29 H 0.06 1.17 7.22 -51.93 -0.38 0.79 16 30 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 33 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 326.15 15.07 4.91 4.91 Total: -1.00 -28.53 326.15 -8.45 -36.98 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.58 Total: 4.96 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -0.43 Total: -18.05 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.01 Total: -39.86 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.35 Total: -5.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.53 -8.45 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189580091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.009 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds