Wall clock time and date at job start Sun Mar 29 2020 23:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 H 1.09000 * 109.47021 * 305.54018 * 3 2 1 5 5 C 1.50697 * 109.47215 * 185.54127 * 3 2 1 6 6 H 1.08007 * 120.00201 * 239.99978 * 5 3 2 7 7 C 1.37875 * 120.00258 * 59.99743 * 5 3 2 8 8 N 1.31516 * 119.99742 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00378 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46997 * 59.99962 * 9 7 5 11 11 H 1.48496 * 109.47354 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46745 * 300.00084 * 9 7 5 13 13 N 1.46898 * 109.47323 * 65.53816 * 3 2 1 14 14 C 1.46899 * 111.00437 * 254.53236 * 13 3 2 15 15 C 1.53786 * 113.61203 * 255.24754 * 14 13 3 16 16 C 1.53957 * 87.01552 * 220.04557 * 15 14 13 17 17 O 1.42898 * 113.74295 * 139.94328 * 16 15 14 18 18 C 1.42904 * 114.00083 * 112.39751 * 17 16 15 19 19 C 1.53001 * 109.46983 * 90.00142 * 18 17 16 20 20 C 1.52994 * 109.47162 * 209.99966 * 18 17 16 21 21 C 1.53777 * 113.61689 * 157.63578 * 14 13 3 22 22 H 1.08992 * 109.47445 * 295.50285 * 1 2 3 23 23 H 1.09006 * 109.46783 * 55.50577 * 1 2 3 24 24 H 1.09000 * 109.47171 * 175.50199 * 1 2 3 25 25 H 1.09001 * 109.47264 * 239.99632 * 2 1 3 26 26 H 1.09001 * 109.46984 * 119.99404 * 2 1 3 27 27 H 0.97001 * 119.99883 * 179.97438 * 8 7 5 28 28 H 1.00906 * 110.99775 * 18.48903 * 13 3 2 29 29 H 1.08996 * 112.84570 * 26.43315 * 14 13 3 30 30 H 1.09001 * 113.61446 * 334.55934 * 15 14 13 31 31 H 1.08994 * 113.61754 * 105.46891 * 15 14 13 32 32 H 1.09004 * 113.53346 * 270.80910 * 16 15 14 33 33 H 1.09002 * 109.46835 * 330.00141 * 18 17 16 34 34 H 1.08997 * 109.47148 * 59.99859 * 19 18 17 35 35 H 1.09000 * 109.47332 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47001 * 299.99906 * 19 18 17 37 37 H 1.08997 * 109.47424 * 60.00662 * 20 18 17 38 38 H 1.08998 * 109.47255 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.47388 * 299.99836 * 20 18 17 40 40 H 1.09000 * 113.61677 * 254.52593 * 21 14 13 41 41 H 1.08998 * 113.61306 * 25.43600 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8362 5 6 3.5407 1.4447 -0.1372 6 1 4.1530 1.8868 0.6349 7 6 4.1323 0.8822 -1.2484 8 7 3.3868 0.3442 -2.1888 9 14 5.9926 0.8843 -1.4181 10 1 6.5944 0.1460 -0.2789 11 1 6.3741 0.2250 -2.6928 12 1 6.4880 2.2843 -1.4178 13 7 1.6626 2.0953 1.2606 14 6 0.5556 3.0387 1.0542 15 6 0.9920 4.5132 1.0688 16 6 -0.2968 4.8032 1.8595 17 8 -0.1240 5.7532 2.9130 18 6 -0.8022 6.9921 2.6954 19 6 -2.2132 6.9109 3.2815 20 6 -0.0305 8.1227 3.3788 21 6 -0.2426 3.3412 2.3333 22 1 -0.3634 0.4424 0.9274 23 1 -0.3633 0.5820 -0.8470 24 1 -0.3633 -1.0245 -0.0806 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.8029 -0.0511 -2.9707 28 1 1.4290 1.4124 1.9657 29 1 -0.0698 2.7770 0.2008 30 1 1.9036 4.6932 1.6387 31 1 1.0118 4.9726 0.0806 32 1 -1.1555 5.0253 1.2258 33 1 -0.8640 7.1894 1.6252 34 1 -2.1514 6.7135 4.3516 35 1 -2.7307 7.8557 3.1152 36 1 -2.7630 6.1054 2.7946 37 1 0.9747 8.1807 2.9613 38 1 -0.5475 9.0678 3.2125 39 1 0.0313 7.9254 4.4490 40 1 -1.2181 2.8559 2.3643 41 1 0.3309 3.2002 3.2494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189580091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:14 Heat of formation + Delta-G solvation = -58.306033 kcal Electronic energy + Delta-G solvation = -17899.667561 eV Core-core repulsion = 15200.032396 eV Total energy + Delta-G solvation = -2699.635165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54494 -38.44658 -36.71161 -34.03236 -33.03472 -31.40862 -28.49560 -28.07602 -26.57515 -25.03309 -23.65721 -22.14082 -21.62762 -20.45673 -18.27732 -18.04992 -16.72142 -16.49011 -16.25518 -15.78601 -15.28182 -15.00294 -14.81997 -14.44529 -13.83880 -13.53387 -13.34097 -13.26537 -13.17938 -13.05981 -12.89387 -12.70999 -12.57141 -12.35960 -12.17154 -12.12210 -11.89581 -11.60285 -11.56914 -11.41297 -11.22658 -10.93933 -10.40170 -10.28521 -8.88968 -8.04657 -6.15520 1.42867 1.44170 1.52004 2.45670 2.78244 3.20850 3.66604 3.75057 3.83557 3.99954 4.06247 4.09169 4.21671 4.34292 4.43786 4.50537 4.56036 4.70177 4.77905 4.79120 4.88980 4.93344 4.94672 4.98002 5.05401 5.09163 5.18693 5.26741 5.33312 5.33747 5.36861 5.42767 5.60791 5.76958 5.92716 6.39156 6.48113 6.74479 6.93813 6.99669 7.53850 8.98463 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.005087 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.959369 B = 5503.110720 C = 6185.321789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.225 3.775 4 H -0.006 1.006 5 C -0.512 4.512 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.674 5.674 14 C 0.061 3.939 15 C -0.144 4.144 16 C 0.078 3.922 17 O -0.385 6.385 18 C 0.067 3.933 19 C -0.169 4.169 20 C -0.148 4.148 21 C -0.125 4.125 22 H 0.054 0.946 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.259 0.741 28 H 0.331 0.669 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 10.361 8.489 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.066 0.934 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.305 5.305 14 C -0.049 4.049 15 C -0.183 4.183 16 C 0.019 3.981 17 O -0.305 6.305 18 C 0.009 3.991 19 C -0.226 4.226 20 C -0.205 4.205 21 C -0.163 4.163 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.912 10.724 8.438 17.472 hybrid contribution 0.401 -0.787 -0.862 1.234 sum -10.511 9.937 7.576 16.329 Atomic orbital electron populations 1.21725 0.96261 1.00846 1.00427 1.22019 0.94403 1.00329 1.01261 1.18985 0.93763 0.89539 0.86030 0.98773 1.21544 0.93181 1.35916 1.04476 0.93364 1.25663 1.02174 0.95375 0.95634 1.69991 1.36207 1.40100 1.09848 0.85668 0.80954 0.78100 0.77196 1.19817 1.20894 1.20240 1.60704 1.37639 1.21684 1.10454 1.22734 0.91727 0.93291 0.97172 1.23579 0.98895 0.96343 0.99515 1.23500 0.96818 0.88594 0.89162 1.87977 1.73090 1.25341 1.44090 1.22376 0.92717 0.84428 0.99532 1.22281 0.95696 1.02930 1.01742 1.21871 1.00337 0.97200 1.01100 1.23353 1.00540 0.94685 0.97745 0.92678 0.94487 0.92750 0.91490 0.94618 0.93146 0.85019 0.92290 0.90924 0.92736 0.88092 0.91919 0.92269 0.89965 0.92618 0.93039 0.89225 0.92185 0.89536 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.06 71.98 0.65 -4.41 16 2 C -0.14 -6.61 5.07 30.59 0.16 -6.46 16 3 C 0.23 11.42 2.12 44.17 0.09 11.51 16 4 H -0.01 -0.32 7.38 -2.39 -0.02 -0.33 16 5 C -0.51 -29.22 8.84 25.60 0.23 -28.99 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.53 5.29 84.65 0.45 0.98 16 8 N -0.92 -53.62 11.29 21.45 0.24 -53.37 16 9 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.67 -28.72 6.11 -470.63 -2.88 -31.59 16 14 C 0.06 2.19 3.14 45.44 0.14 2.33 16 15 C -0.14 -4.99 7.73 31.18 0.24 -4.75 16 16 C 0.08 2.12 4.13 31.18 0.13 2.25 16 17 O -0.39 -10.63 10.00 -148.98 -1.49 -12.12 16 18 C 0.07 1.37 3.22 30.59 0.10 1.47 16 19 C -0.17 -2.78 9.53 71.98 0.69 -2.09 16 20 C -0.15 -2.66 9.56 71.98 0.69 -1.97 16 21 C -0.13 -3.54 7.51 31.12 0.23 -3.30 16 22 H 0.05 1.81 7.15 -2.39 -0.02 1.79 16 23 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 26 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 27 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.33 13.07 7.64 -89.69 -0.68 12.39 16 29 H 0.06 2.16 7.22 -2.39 -0.02 2.15 16 30 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 2.33 7.77 -2.39 -0.02 2.31 16 33 H 0.06 1.23 7.72 -2.39 -0.02 1.21 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.04 326.15 1.98 -60.06 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.29 Total: 23.36 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.79 Total: -33.43 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.64 Total: -84.97 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.49 Total: -12.12 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -62.04 1.98 -60.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189580091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.758 kcal (2) G-P(sol) polarization free energy of solvation -62.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds