Wall clock time and date at job start Sun Mar 29 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46878 * 2 1 4 4 O 1.42896 * 109.47365 * 239.99588 * 2 1 3 5 5 C 1.53009 * 109.46973 * 119.99730 * 2 1 3 6 6 N 1.46895 * 109.46894 * 185.74302 * 5 2 1 7 7 C 1.46905 * 111.00037 * 162.11649 * 6 5 2 8 8 C 1.52994 * 109.47076 * 294.42468 * 7 6 5 9 9 C 1.53003 * 109.47284 * 185.25411 * 8 7 6 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99956 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99623 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99917 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99944 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47199 * 90.00077 * 14 12 10 16 16 H 1.48504 * 109.46917 * 210.00434 * 14 12 10 17 17 H 1.48506 * 109.47005 * 330.00113 * 14 12 10 18 18 C 1.46905 * 111.00104 * 286.06809 * 6 5 2 19 19 C 1.53002 * 117.50050 * 237.80287 * 18 6 5 20 20 C 1.52997 * 117.50023 * 169.17831 * 18 6 5 21 21 H 1.08999 * 109.47353 * 300.00155 * 1 2 3 22 22 H 1.08997 * 109.47282 * 60.00499 * 1 2 3 23 23 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46567 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46756 * 299.99823 * 3 2 1 26 26 H 1.08999 * 109.47256 * 59.99785 * 3 2 1 27 27 H 0.96704 * 114.00108 * 299.99782 * 4 2 1 28 28 H 1.09001 * 109.46949 * 305.74330 * 5 2 1 29 29 H 1.09002 * 109.47100 * 65.74228 * 5 2 1 30 30 H 1.09003 * 109.46747 * 54.41875 * 7 6 5 31 31 H 1.08998 * 109.47230 * 174.42206 * 7 6 5 32 32 H 1.09003 * 109.46946 * 305.24936 * 8 7 6 33 33 H 1.09004 * 109.47770 * 65.24978 * 8 7 6 34 34 H 1.09003 * 109.46741 * 299.99651 * 9 8 7 35 35 H 1.08993 * 109.47019 * 59.99618 * 9 8 7 36 36 H 0.97006 * 119.99847 * 180.02562 * 13 12 10 37 37 H 1.08998 * 115.54585 * 23.50522 * 18 6 5 38 38 H 1.09000 * 117.49666 * 359.97438 * 19 18 6 39 39 H 1.08997 * 117.49980 * 145.02247 * 19 18 6 40 40 H 1.08999 * 117.49659 * 214.98442 * 20 18 6 41 41 H 1.09001 * 117.49654 * 359.97318 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2494 6 7 3.5024 -0.6024 1.3206 7 6 3.9888 -0.8938 2.6758 8 6 3.4789 0.1773 3.6420 9 6 4.0907 -0.0509 5.0257 10 6 3.5889 1.0045 5.9771 11 1 2.9027 1.7625 5.6296 12 6 4.0068 1.0030 7.2911 13 7 3.5685 1.9237 8.1215 14 14 5.1944 -0.3078 7.8919 15 1 6.5895 0.1667 7.7085 16 1 4.9481 -0.5765 9.3315 17 1 4.9896 -1.5557 7.1134 18 6 4.1502 -1.4728 0.3303 19 6 5.1422 -2.5161 0.8483 20 6 5.6505 -1.2836 0.0976 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.7211 -1.5953 -1.2327 28 1 1.5951 -0.2702 2.1363 29 1 1.7630 -1.7743 1.1995 30 1 3.6229 -1.8710 2.9908 31 1 5.0788 -0.8958 2.6780 32 1 3.7660 1.1631 3.2760 33 1 2.3927 0.1175 3.7106 34 1 3.8036 -1.0367 5.3917 35 1 5.1769 0.0090 4.9570 36 1 3.8628 1.9228 9.0459 37 1 3.5377 -1.7436 -0.5296 38 1 5.3145 -2.5564 1.9238 39 1 5.1825 -3.4737 0.3291 40 1 6.0251 -1.4303 -0.9155 41 1 6.1568 -0.5130 0.6789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189914271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:36 Heat of formation + Delta-G solvation = -30.526232 kcal Electronic energy + Delta-G solvation = -18201.284683 eV Core-core repulsion = 15502.854141 eV Total energy + Delta-G solvation = -2698.430542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53246 -37.36996 -34.77346 -33.25258 -32.12678 -30.94902 -27.38129 -27.17786 -25.18734 -22.93874 -22.12038 -20.60866 -20.20779 -19.45536 -16.87666 -16.58225 -15.89294 -15.63903 -15.09781 -14.63806 -14.17655 -13.96325 -13.49788 -12.80184 -12.65372 -12.47889 -12.30308 -12.17700 -12.03453 -11.78659 -11.67125 -11.41550 -11.39544 -10.94131 -10.72685 -10.65872 -10.47951 -10.34229 -9.93041 -9.68939 -9.66766 -9.44981 -9.15296 -8.52554 -7.89476 -6.03135 -4.00770 3.31166 3.38325 3.41848 3.78262 4.15019 4.20733 4.46089 4.79405 4.93798 5.00006 5.07624 5.16811 5.23013 5.30717 5.40811 5.53128 5.59987 5.72323 5.75204 5.83753 5.90123 5.93533 5.93811 6.06606 6.11262 6.17663 6.22842 6.26309 6.54674 6.55805 6.59091 6.92218 7.27715 7.31318 7.38658 7.48300 7.59994 7.81505 8.55992 9.02272 9.59687 11.10423 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.005814 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.543190 B = 4814.753252 C = 5589.855344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.133 3.867 3 C -0.128 4.128 4 O -0.555 6.555 5 C 0.027 3.973 6 N -0.497 5.497 7 C 0.049 3.951 8 C -0.098 4.098 9 C -0.013 4.013 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.267 1.267 18 C 0.024 3.976 19 C -0.228 4.228 20 C -0.172 4.172 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.366 0.634 28 H 0.093 0.907 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -7.993 -17.711 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.093 3.907 3 C -0.185 4.185 4 O -0.360 6.360 5 C -0.101 4.101 6 N -0.219 5.219 7 C -0.078 4.078 8 C -0.136 4.136 9 C -0.051 4.051 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.085 4.085 19 C -0.267 4.267 20 C -0.210 4.210 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.213 0.787 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.212 -6.841 -17.725 19.127 hybrid contribution 0.213 -2.054 0.889 2.248 sum -1.998 -8.895 -16.835 19.145 Atomic orbital electron populations 1.22485 0.95997 1.02125 1.03048 1.21275 0.91587 0.93951 0.83930 1.21595 1.03578 0.92145 1.01180 1.86617 1.76626 1.28124 1.44680 1.22860 0.89024 0.98554 0.99712 1.61810 1.04319 1.51075 1.04651 1.22448 1.00214 0.98016 0.87137 1.21509 0.99606 0.97600 0.94839 1.19545 0.95734 0.97197 0.92583 1.21139 1.28141 1.12523 0.93790 0.91036 1.25035 0.96100 0.95577 0.96821 1.69919 1.44968 1.34397 1.05086 0.86781 0.81746 0.82956 0.77803 1.20282 1.21426 1.19127 1.23019 0.91631 0.95885 0.98011 1.23595 1.07685 0.94202 1.01246 1.22968 0.97423 0.99677 1.00948 0.91220 0.91763 0.92703 0.90297 0.93211 0.91358 0.78673 0.88918 0.94754 0.95212 0.90923 0.91871 0.93025 0.96935 0.97111 0.92785 0.85361 0.88252 0.89500 0.89093 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.81 37.16 0.33 -1.37 16 2 C 0.13 1.51 1.15 -90.62 -0.10 1.40 16 3 C -0.13 -1.61 8.62 37.16 0.32 -1.29 16 4 O -0.55 -6.03 10.39 -35.23 -0.37 -6.40 16 5 C 0.03 0.34 4.16 -3.82 -0.02 0.33 16 6 N -0.50 -7.14 3.64 -226.64 -0.82 -7.96 16 7 C 0.05 0.81 3.61 -3.82 -0.01 0.79 16 8 C -0.10 -1.94 4.99 -26.73 -0.13 -2.07 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.52 -14.91 9.66 -34.44 -0.33 -15.25 16 11 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 14 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 18 C 0.02 0.30 5.54 -67.71 -0.38 -0.07 16 19 C -0.23 -2.80 9.48 -26.73 -0.25 -3.05 16 20 C -0.17 -2.14 10.04 -26.73 -0.27 -2.41 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 1.13 7.45 -51.93 -0.39 0.75 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.37 2.74 8.53 45.56 0.39 3.13 16 28 H 0.09 1.30 5.97 -51.93 -0.31 0.99 16 29 H 0.03 0.41 8.03 -51.93 -0.42 -0.01 16 30 H 0.03 0.49 7.85 -51.93 -0.41 0.08 16 31 H 0.07 1.22 6.30 -51.93 -0.33 0.89 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.05 1.01 6.47 -51.93 -0.34 0.68 16 34 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 35 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.13 1.48 5.14 -51.93 -0.27 1.21 16 38 H 0.10 1.34 5.85 -51.93 -0.30 1.04 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -30.99 317.51 -7.87 -38.86 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.51 Total: 2.37 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.06 Total: -21.59 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.05 Total: -35.34 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.37 Total: -6.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.99 -7.87 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189914271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.336 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds