Wall clock time and date at job start Sun Mar 29 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46878 * 2 1 4 4 O 1.42896 * 109.47365 * 239.99588 * 2 1 3 5 5 C 1.53009 * 109.46973 * 119.99730 * 2 1 3 6 6 N 1.46895 * 109.46894 * 185.74302 * 5 2 1 7 7 C 1.46905 * 111.00037 * 162.11649 * 6 5 2 8 8 C 1.52994 * 109.47076 * 294.42468 * 7 6 5 9 9 C 1.53003 * 109.47284 * 185.25411 * 8 7 6 10 10 C 1.50703 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99956 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99623 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99917 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99944 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47199 * 90.00077 * 14 12 10 16 16 H 1.48504 * 109.46917 * 210.00434 * 14 12 10 17 17 H 1.48506 * 109.47005 * 330.00113 * 14 12 10 18 18 C 1.46905 * 111.00104 * 286.06809 * 6 5 2 19 19 C 1.53002 * 117.50050 * 237.80287 * 18 6 5 20 20 C 1.52997 * 117.50023 * 169.17831 * 18 6 5 21 21 H 1.08999 * 109.47353 * 300.00155 * 1 2 3 22 22 H 1.08997 * 109.47282 * 60.00499 * 1 2 3 23 23 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46567 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46756 * 299.99823 * 3 2 1 26 26 H 1.08999 * 109.47256 * 59.99785 * 3 2 1 27 27 H 0.96704 * 114.00108 * 299.99782 * 4 2 1 28 28 H 1.09001 * 109.46949 * 305.74330 * 5 2 1 29 29 H 1.09002 * 109.47100 * 65.74228 * 5 2 1 30 30 H 1.09003 * 109.46747 * 54.41875 * 7 6 5 31 31 H 1.08998 * 109.47230 * 174.42206 * 7 6 5 32 32 H 1.09003 * 109.46946 * 305.24936 * 8 7 6 33 33 H 1.09004 * 109.47770 * 65.24978 * 8 7 6 34 34 H 1.09003 * 109.46741 * 299.99651 * 9 8 7 35 35 H 1.08993 * 109.47019 * 59.99618 * 9 8 7 36 36 H 0.97006 * 119.99847 * 180.02562 * 13 12 10 37 37 H 1.08998 * 115.54585 * 23.50522 * 18 6 5 38 38 H 1.09000 * 117.49666 * 359.97438 * 19 18 6 39 39 H 1.08997 * 117.49980 * 145.02247 * 19 18 6 40 40 H 1.08999 * 117.49659 * 214.98442 * 20 18 6 41 41 H 1.09001 * 117.49654 * 359.97318 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2494 6 7 3.5024 -0.6024 1.3206 7 6 3.9888 -0.8938 2.6758 8 6 3.4789 0.1773 3.6420 9 6 4.0907 -0.0509 5.0257 10 6 3.5889 1.0045 5.9771 11 1 2.9027 1.7625 5.6296 12 6 4.0068 1.0030 7.2911 13 7 3.5685 1.9237 8.1215 14 14 5.1944 -0.3078 7.8919 15 1 6.5895 0.1667 7.7085 16 1 4.9481 -0.5765 9.3315 17 1 4.9896 -1.5557 7.1134 18 6 4.1502 -1.4728 0.3303 19 6 5.1422 -2.5161 0.8483 20 6 5.6505 -1.2836 0.0976 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 1.7211 -1.5953 -1.2327 28 1 1.5951 -0.2702 2.1363 29 1 1.7630 -1.7743 1.1995 30 1 3.6229 -1.8710 2.9908 31 1 5.0788 -0.8958 2.6780 32 1 3.7660 1.1631 3.2760 33 1 2.3927 0.1175 3.7106 34 1 3.8036 -1.0367 5.3917 35 1 5.1769 0.0090 4.9570 36 1 3.8628 1.9228 9.0459 37 1 3.5377 -1.7436 -0.5296 38 1 5.3145 -2.5564 1.9238 39 1 5.1825 -3.4737 0.3291 40 1 6.0251 -1.4303 -0.9155 41 1 6.1568 -0.5130 0.6789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189914271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:36 Heat of formation + Delta-G solvation = -51.231362 kcal Electronic energy + Delta-G solvation = -18202.182525 eV Core-core repulsion = 15502.854141 eV Total energy + Delta-G solvation = -2699.328384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56141 -38.32172 -36.28710 -34.84274 -33.54833 -32.37864 -28.97421 -28.14636 -26.44586 -24.44500 -23.19856 -21.95725 -21.48522 -20.61185 -18.87556 -17.74310 -16.96956 -16.74086 -16.20238 -16.07127 -15.85001 -15.12889 -14.76298 -14.56842 -13.99793 -13.63459 -13.56264 -13.45599 -13.09749 -12.97438 -12.90052 -12.66307 -12.55486 -12.36830 -12.15473 -11.86351 -11.76610 -11.55479 -11.46421 -11.40928 -11.26314 -11.14166 -10.76890 -10.47641 -8.97719 -8.30208 -6.34317 1.34788 1.36199 1.48287 2.35215 2.73217 3.05027 3.15830 3.37144 3.83437 3.99901 4.02801 4.12157 4.17286 4.17926 4.24661 4.43956 4.60244 4.62255 4.69332 4.79478 4.81991 4.85543 4.92469 4.98937 5.04068 5.07280 5.08707 5.17208 5.20200 5.30005 5.31296 5.49317 5.52419 5.58840 5.65416 6.14480 6.29213 6.29938 6.73675 6.91881 7.30260 8.86747 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.005814 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.543190 B = 4814.753252 C = 5589.855344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.141 3.859 3 C -0.128 4.128 4 O -0.562 6.562 5 C 0.026 3.974 6 N -0.508 5.508 7 C 0.063 3.937 8 C -0.087 4.087 9 C -0.009 4.009 10 C -0.532 4.532 11 H 0.030 0.970 12 C 0.003 3.997 13 N -0.952 5.952 14 Si 0.951 3.049 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.247 1.247 18 C 0.019 3.981 19 C -0.221 4.221 20 C -0.176 4.176 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.384 0.616 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.146 0.854 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 -10.440 -19.143 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.100 3.900 3 C -0.185 4.185 4 O -0.370 6.370 5 C -0.102 4.102 6 N -0.229 5.229 7 C -0.064 4.064 8 C -0.125 4.125 9 C -0.047 4.047 10 C -0.570 4.570 11 H 0.049 0.951 12 C -0.193 4.193 13 N -0.593 5.593 14 Si 0.775 3.225 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.170 1.170 18 C -0.090 4.090 19 C -0.260 4.260 20 C -0.214 4.214 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.233 0.767 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.163 0.837 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.727 -9.302 -19.185 21.391 hybrid contribution 0.005 -1.206 1.289 1.765 sum -1.722 -10.508 -17.896 20.824 Atomic orbital electron populations 1.22426 0.94389 1.03285 1.03052 1.21104 0.92604 0.92799 0.83478 1.21561 1.02185 0.93589 1.01176 1.86578 1.76873 1.29552 1.44005 1.22901 0.87943 0.99525 0.99792 1.61731 1.05421 1.52116 1.03672 1.22152 0.99894 0.96563 0.87790 1.21310 0.99278 0.98147 0.93738 1.19480 0.95960 0.95619 0.93609 1.21489 1.27494 1.12892 0.95129 0.95139 1.26037 0.98180 0.98163 0.96951 1.70074 1.46800 1.36709 1.05683 0.85641 0.79133 0.80273 0.77490 1.19207 1.20828 1.17002 1.23148 0.91878 0.95983 0.97987 1.23597 1.06809 0.94947 1.00662 1.23013 0.97193 0.99481 1.01743 0.91763 0.91223 0.90993 0.92341 0.92411 0.92207 0.76700 0.90678 0.93191 0.94693 0.91161 0.93484 0.93277 0.96284 0.96604 0.92492 0.83704 0.89559 0.87434 0.87321 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.81 71.98 0.63 -2.32 16 2 C 0.14 2.96 1.15 -10.79 -0.01 2.95 16 3 C -0.13 -3.17 8.62 71.98 0.62 -2.55 16 4 O -0.56 -10.69 10.39 -148.98 -1.55 -12.24 16 5 C 0.03 0.64 4.16 86.31 0.36 1.00 16 6 N -0.51 -13.97 3.64 -870.96 -3.17 -17.14 16 7 C 0.06 2.03 3.61 86.30 0.31 2.34 16 8 C -0.09 -3.48 4.99 30.59 0.15 -3.32 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.53 -31.43 9.66 25.60 0.25 -31.18 16 11 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 12 C 0.00 0.19 5.47 84.66 0.46 0.66 16 13 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 14 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 18 C 0.02 0.43 5.54 44.91 0.25 0.68 16 19 C -0.22 -4.84 9.48 30.60 0.29 -4.55 16 20 C -0.18 -4.04 10.04 30.59 0.31 -3.74 16 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.06 1.68 7.45 -2.39 -0.02 1.66 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.38 4.37 8.53 -74.05 -0.63 3.74 16 28 H 0.07 2.08 5.97 -2.39 -0.01 2.06 16 29 H 0.05 1.05 8.03 -2.39 -0.02 1.03 16 30 H 0.03 1.08 7.85 -2.39 -0.02 1.07 16 31 H 0.07 2.28 6.30 -2.39 -0.02 2.27 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.96 6.47 -2.38 -0.02 1.95 16 34 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 35 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 36 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 37 H 0.15 2.86 5.14 -2.39 -0.01 2.85 16 38 H 0.09 2.14 5.85 -2.39 -0.01 2.13 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 2.05 7.94 -2.39 -0.02 2.03 16 Total: -1.00 -67.36 317.51 1.51 -65.84 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.30 Total: 17.48 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 3.74 Total: -40.34 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.87 Total: -77.52 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.55 Total: -12.24 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -67.36 1.51 -65.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189914271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.611 kcal (2) G-P(sol) polarization free energy of solvation -67.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds