Wall clock time and date at job start Sun Mar 29 2020 22:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46957 * 2 1 4 4 C 1.53004 * 112.85402 * 298.87170 * 3 2 1 5 5 C 1.53005 * 109.46570 * 305.84940 * 4 3 2 6 6 C 1.53782 * 113.61331 * 70.06354 * 3 2 1 7 7 H 1.08997 * 113.61646 * 25.43389 * 6 3 2 8 8 N 1.46503 * 113.61603 * 254.61235 * 6 3 2 9 9 C 1.36935 * 120.00143 * 155.00075 * 8 6 3 10 10 H 1.08003 * 120.00054 * 0.02562 * 9 8 6 11 11 C 1.38812 * 120.00390 * 180.02562 * 9 8 6 12 12 N 1.31617 * 120.00417 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99640 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47016 * 90.00061 * 13 11 9 15 15 H 1.48505 * 109.46963 * 210.00131 * 13 11 9 16 16 H 1.48503 * 109.47006 * 329.99874 * 13 11 9 17 17 C 1.53782 * 87.08226 * 139.97971 * 6 3 2 18 18 H 1.09003 * 113.61033 * 89.11683 * 17 6 3 19 19 C 1.53001 * 113.61723 * 219.93399 * 17 6 3 20 20 C 1.53778 * 113.61656 * 167.66799 * 3 2 1 21 21 H 1.08994 * 113.61355 * 334.57230 * 20 3 2 22 22 O 1.42905 * 113.61070 * 105.47203 * 20 3 2 23 23 C 1.42904 * 113.99814 * 210.00527 * 22 20 3 24 24 H 1.08996 * 109.47141 * 66.75817 * 1 2 3 25 25 H 1.08996 * 109.47020 * 186.75863 * 1 2 3 26 26 H 1.09000 * 109.46993 * 306.76039 * 1 2 3 27 27 H 1.09000 * 109.47073 * 240.00637 * 2 1 3 28 28 H 1.08998 * 109.46768 * 120.00026 * 2 1 3 29 29 H 1.09000 * 109.47000 * 65.84427 * 4 3 2 30 30 H 1.08999 * 109.47106 * 185.85024 * 4 3 2 31 31 H 1.08999 * 109.47171 * 185.27538 * 5 4 3 32 32 H 1.09001 * 109.47037 * 305.28002 * 5 4 3 33 33 H 1.08998 * 109.47283 * 65.27608 * 5 4 3 34 34 H 0.96999 * 119.99859 * 334.99858 * 8 6 3 35 35 H 0.97001 * 120.00085 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.46597 * 59.99935 * 19 17 6 37 37 H 1.08994 * 109.46877 * 179.97438 * 19 17 6 38 38 H 1.09003 * 109.47092 * 299.99990 * 19 17 6 39 39 H 1.08991 * 109.47219 * 180.02562 * 23 22 20 40 40 H 1.09004 * 109.47063 * 299.99753 * 23 22 20 41 41 H 1.09002 * 109.47464 * 59.99870 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5962 2.2297 -1.2347 5 6 2.0049 1.4695 -2.4981 6 6 1.7923 2.1834 1.3246 7 1 1.7106 1.5213 2.1866 8 7 0.7054 3.1632 1.2547 9 6 0.0294 3.5182 2.3915 10 1 0.2979 3.0763 3.3397 11 6 -1.0008 4.4461 2.3252 12 7 -1.6502 4.7878 3.4179 13 14 -1.4647 5.2111 0.6853 14 1 -2.5047 4.3797 0.0279 15 1 -1.9943 6.5802 0.9100 16 1 -0.2638 5.2816 -0.1853 17 6 3.1909 2.7987 1.1511 18 1 3.1907 3.7309 0.5860 19 6 3.9844 2.8950 2.4557 20 6 3.5431 1.5645 0.3009 21 1 3.9409 0.7329 0.8824 22 8 4.3345 1.8674 -0.8498 23 6 5.6637 1.3458 -0.7947 24 1 -0.3633 0.4055 -0.9442 25 1 -0.3633 -1.0205 0.1209 26 1 -0.3633 0.6150 0.8233 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5131 2.3512 -1.2181 30 1 2.0720 3.2103 -1.2308 31 1 1.7732 2.0726 -3.3759 32 1 3.0753 1.2657 -2.4693 33 1 1.4572 0.5285 -2.5490 34 1 0.4645 3.5604 0.4032 35 1 -2.3704 5.4359 3.3715 36 1 4.1176 1.8975 2.8743 37 1 4.9600 3.3380 2.2556 38 1 3.4410 3.5178 3.1663 39 1 6.1992 1.6190 -1.7039 40 1 6.1815 1.7610 0.0700 41 1 5.6247 0.2599 -0.7080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191412368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:18 Heat of formation + Delta-G solvation = -27.977660 kcal Electronic energy + Delta-G solvation = -19160.241585 eV Core-core repulsion = 16461.921557 eV Total energy + Delta-G solvation = -2698.320028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24443 -36.48315 -33.94650 -33.05406 -30.88574 -30.64065 -28.42774 -26.59151 -24.51825 -23.50766 -22.99470 -21.62732 -19.88090 -18.11212 -17.27922 -16.43199 -15.50499 -15.10100 -14.51372 -14.36914 -13.88371 -13.61083 -13.22542 -12.97003 -12.61627 -12.52898 -12.31270 -12.07512 -11.65648 -11.55970 -11.40017 -11.36053 -11.02846 -10.86021 -10.78784 -10.65152 -10.46137 -10.27169 -10.08114 -9.87633 -9.74838 -9.44594 -8.79574 -8.77176 -7.18651 -5.75793 -3.09824 3.39060 3.42842 3.46892 4.01630 4.60704 4.90565 4.97059 5.08035 5.28588 5.37285 5.44707 5.50183 5.52517 5.62452 5.66360 5.69596 5.72861 5.78579 5.84186 5.90764 6.00495 6.10794 6.17622 6.24817 6.27655 6.30052 6.38393 6.43701 6.57315 6.60728 6.71554 6.76751 6.88604 6.96576 6.99842 7.54582 8.01830 8.44459 9.23056 9.95938 10.16792 11.42601 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.008746 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.030165 B = 3200.515410 C = 3556.107303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.090 4.090 4 C -0.088 4.088 5 C -0.148 4.148 6 C 0.188 3.812 7 H 0.084 0.916 8 N -0.730 5.730 9 C -0.242 4.242 10 H 0.090 0.910 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.877 3.123 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.276 1.276 17 C -0.155 4.155 18 H 0.091 0.909 19 C -0.134 4.134 20 C 0.071 3.929 21 H 0.080 0.920 22 O -0.369 6.369 23 C 0.030 3.970 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.365 0.635 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 -9.007 -8.790 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.139 4.139 3 C -0.092 4.092 4 C -0.125 4.125 5 C -0.205 4.205 6 C 0.076 3.924 7 H 0.102 0.898 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.108 0.892 11 C -0.190 4.190 12 N -0.581 5.581 13 Si 0.707 3.293 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.202 1.202 17 C -0.177 4.177 18 H 0.109 0.891 19 C -0.191 4.191 20 C 0.013 3.987 21 H 0.097 0.903 22 O -0.287 6.287 23 C -0.067 4.067 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.199 0.801 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.373 -8.854 -8.689 16.830 hybrid contribution -0.180 0.544 -0.887 1.056 sum 11.193 -8.310 -9.576 16.913 Atomic orbital electron populations 1.21754 0.95383 1.00842 1.02967 1.21411 0.96526 0.95208 1.00740 1.22706 0.92983 0.95753 0.97751 1.21003 1.00364 0.98522 0.92645 1.21826 1.02437 0.99473 0.96788 1.21412 0.86358 0.90485 0.94164 0.89804 1.42707 1.38364 1.48344 1.07593 1.19113 1.10578 1.19488 0.88003 0.89181 1.24641 0.98473 0.99528 0.96308 1.69694 1.25493 1.36717 1.26236 0.86656 0.78451 0.79134 0.85030 1.21013 1.21761 1.20186 1.23980 0.99598 0.98380 0.95734 0.89123 1.21612 0.98914 1.00921 0.97654 1.23913 0.90562 0.97340 0.86867 0.90263 1.87956 1.22841 1.76760 1.41135 1.22699 0.85026 0.97405 1.01531 0.93154 0.93834 0.90760 0.92580 0.92606 0.92092 0.91886 0.93985 0.91260 0.93530 0.80092 0.93113 0.93598 0.94051 0.91776 0.90420 0.94445 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.44 37.16 0.35 -1.99 16 2 C -0.10 -1.46 4.87 -26.73 -0.13 -1.59 16 3 C -0.09 -1.44 0.53 -153.70 -0.08 -1.52 16 4 C -0.09 -1.45 3.27 -26.73 -0.09 -1.54 16 5 C -0.15 -2.08 9.17 37.16 0.34 -1.74 16 6 C 0.19 3.55 2.88 -67.12 -0.19 3.36 16 7 H 0.08 1.63 8.02 -51.93 -0.42 1.21 16 8 N -0.73 -16.90 5.10 -52.64 -0.27 -17.17 16 9 C -0.24 -6.67 10.45 -15.06 -0.16 -6.83 16 10 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 11 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 12 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 13 Si 0.88 22.20 27.74 -169.99 -4.71 17.49 16 14 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 16 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 17 C -0.15 -2.66 3.64 -89.72 -0.33 -2.98 16 18 H 0.09 1.73 7.61 -51.93 -0.40 1.34 16 19 C -0.13 -2.09 9.72 37.16 0.36 -1.73 16 20 C 0.07 1.05 3.31 -25.83 -0.09 0.97 16 21 H 0.08 1.06 7.66 -51.93 -0.40 0.66 16 22 O -0.37 -5.30 7.85 -35.23 -0.28 -5.57 16 23 C 0.03 0.33 10.85 101.05 1.10 1.43 16 24 H 0.05 0.77 7.26 -51.93 -0.38 0.39 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 27 H 0.06 0.74 6.75 -51.93 -0.35 0.39 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 30 H 0.06 1.13 7.30 -51.93 -0.38 0.75 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.97 5.99 -51.93 -0.31 0.66 16 33 H 0.05 0.61 6.92 -51.93 -0.36 0.25 16 34 H 0.36 8.47 3.86 -40.82 -0.16 8.32 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.04 0.64 7.96 -51.93 -0.41 0.23 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -29.85 313.99 -6.03 -35.87 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.27 Total: 7.13 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 0.99 Total: -14.09 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.51 Total: -45.56 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.28 Total: -5.57 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.85 -6.03 -35.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191412368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.896 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds