Wall clock time and date at job start Sun Mar 29 2020 22:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46957 * 2 1 4 4 C 1.53004 * 112.85402 * 298.87170 * 3 2 1 5 5 C 1.53005 * 109.46570 * 305.84940 * 4 3 2 6 6 C 1.53782 * 113.61331 * 70.06354 * 3 2 1 7 7 H 1.08997 * 113.61646 * 25.43389 * 6 3 2 8 8 N 1.46503 * 113.61603 * 254.61235 * 6 3 2 9 9 C 1.36935 * 120.00143 * 155.00075 * 8 6 3 10 10 H 1.08003 * 120.00054 * 0.02562 * 9 8 6 11 11 C 1.38812 * 120.00390 * 180.02562 * 9 8 6 12 12 N 1.31617 * 120.00417 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99640 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47016 * 90.00061 * 13 11 9 15 15 H 1.48505 * 109.46963 * 210.00131 * 13 11 9 16 16 H 1.48503 * 109.47006 * 329.99874 * 13 11 9 17 17 C 1.53782 * 87.08226 * 139.97971 * 6 3 2 18 18 H 1.09003 * 113.61033 * 89.11683 * 17 6 3 19 19 C 1.53001 * 113.61723 * 219.93399 * 17 6 3 20 20 C 1.53778 * 113.61656 * 167.66799 * 3 2 1 21 21 H 1.08994 * 113.61355 * 334.57230 * 20 3 2 22 22 O 1.42905 * 113.61070 * 105.47203 * 20 3 2 23 23 C 1.42904 * 113.99814 * 210.00527 * 22 20 3 24 24 H 1.08996 * 109.47141 * 66.75817 * 1 2 3 25 25 H 1.08996 * 109.47020 * 186.75863 * 1 2 3 26 26 H 1.09000 * 109.46993 * 306.76039 * 1 2 3 27 27 H 1.09000 * 109.47073 * 240.00637 * 2 1 3 28 28 H 1.08998 * 109.46768 * 120.00026 * 2 1 3 29 29 H 1.09000 * 109.47000 * 65.84427 * 4 3 2 30 30 H 1.08999 * 109.47106 * 185.85024 * 4 3 2 31 31 H 1.08999 * 109.47171 * 185.27538 * 5 4 3 32 32 H 1.09001 * 109.47037 * 305.28002 * 5 4 3 33 33 H 1.08998 * 109.47283 * 65.27608 * 5 4 3 34 34 H 0.96999 * 119.99859 * 334.99858 * 8 6 3 35 35 H 0.97001 * 120.00085 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.46597 * 59.99935 * 19 17 6 37 37 H 1.08994 * 109.46877 * 179.97438 * 19 17 6 38 38 H 1.09003 * 109.47092 * 299.99990 * 19 17 6 39 39 H 1.08991 * 109.47219 * 180.02562 * 23 22 20 40 40 H 1.09004 * 109.47063 * 299.99753 * 23 22 20 41 41 H 1.09002 * 109.47464 * 59.99870 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5962 2.2297 -1.2347 5 6 2.0049 1.4695 -2.4981 6 6 1.7923 2.1834 1.3246 7 1 1.7106 1.5213 2.1866 8 7 0.7054 3.1632 1.2547 9 6 0.0294 3.5182 2.3915 10 1 0.2979 3.0763 3.3397 11 6 -1.0008 4.4461 2.3252 12 7 -1.6502 4.7878 3.4179 13 14 -1.4647 5.2111 0.6853 14 1 -2.5047 4.3797 0.0279 15 1 -1.9943 6.5802 0.9100 16 1 -0.2638 5.2816 -0.1853 17 6 3.1909 2.7987 1.1511 18 1 3.1907 3.7309 0.5860 19 6 3.9844 2.8950 2.4557 20 6 3.5431 1.5645 0.3009 21 1 3.9409 0.7329 0.8824 22 8 4.3345 1.8674 -0.8498 23 6 5.6637 1.3458 -0.7947 24 1 -0.3633 0.4055 -0.9442 25 1 -0.3633 -1.0205 0.1209 26 1 -0.3633 0.6150 0.8233 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5131 2.3512 -1.2181 30 1 2.0720 3.2103 -1.2308 31 1 1.7732 2.0726 -3.3759 32 1 3.0753 1.2657 -2.4693 33 1 1.4572 0.5285 -2.5490 34 1 0.4645 3.5604 0.4032 35 1 -2.3704 5.4359 3.3715 36 1 4.1176 1.8975 2.8743 37 1 4.9600 3.3380 2.2556 38 1 3.4410 3.5178 3.1663 39 1 6.1992 1.6190 -1.7039 40 1 6.1815 1.7610 0.0700 41 1 5.6247 0.2599 -0.7080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191412368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:18 Heat of formation + Delta-G solvation = -46.246933 kcal Electronic energy + Delta-G solvation = -19161.033800 eV Core-core repulsion = 16461.921557 eV Total energy + Delta-G solvation = -2699.112243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56983 -37.63629 -35.66252 -34.60886 -32.68392 -32.07975 -29.69527 -27.62088 -26.20494 -24.74926 -24.28227 -23.31670 -21.22358 -19.91952 -18.86086 -17.73501 -16.71420 -16.43460 -16.21613 -15.56938 -15.36313 -15.07134 -14.74088 -14.25589 -14.20130 -13.77026 -13.67445 -13.53906 -13.07310 -13.00266 -12.87125 -12.70738 -12.46809 -12.32315 -12.08261 -12.01068 -11.88112 -11.83103 -11.67574 -11.50418 -11.14033 -11.02562 -10.70741 -9.96975 -9.16073 -8.01053 -5.30909 1.35053 1.36283 1.43285 2.47312 2.93568 3.28857 3.61023 3.68770 3.83785 3.94126 4.05779 4.28122 4.34878 4.43585 4.51943 4.57247 4.63349 4.66488 4.69343 4.74181 4.82880 4.91596 4.94655 4.99695 5.02110 5.08557 5.12196 5.23200 5.28549 5.34743 5.45020 5.50355 5.55311 5.64325 5.70847 5.81858 6.25024 6.48025 7.10206 7.88970 8.07818 9.20873 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.008746 C = 0.007872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.030165 B = 3200.515410 C = 3556.107303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.083 4.083 4 C -0.088 4.088 5 C -0.139 4.139 6 C 0.168 3.832 7 H 0.076 0.924 8 N -0.734 5.734 9 C -0.218 4.218 10 H 0.060 0.940 11 C -0.061 4.061 12 N -0.983 5.983 13 Si 0.940 3.060 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.259 1.259 17 C -0.156 4.156 18 H 0.068 0.932 19 C -0.129 4.129 20 C 0.092 3.908 21 H 0.103 0.897 22 O -0.383 6.383 23 C 0.023 3.977 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.550 -10.742 -11.016 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.084 4.084 4 C -0.126 4.126 5 C -0.196 4.196 6 C 0.059 3.941 7 H 0.094 0.906 8 N -0.375 5.375 9 C -0.350 4.350 10 H 0.078 0.922 11 C -0.253 4.253 12 N -0.635 5.635 13 Si 0.769 3.231 14 H -0.204 1.204 15 H -0.223 1.223 16 H -0.184 1.184 17 C -0.178 4.178 18 H 0.087 0.913 19 C -0.187 4.187 20 C 0.034 3.966 21 H 0.121 0.879 22 O -0.301 6.301 23 C -0.074 4.074 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.406 -10.628 -10.952 20.313 hybrid contribution -0.686 1.018 -0.155 1.237 sum 12.721 -9.610 -11.107 19.430 Atomic orbital electron populations 1.21707 0.96397 1.01250 1.01324 1.21418 0.95526 0.94110 1.02417 1.22596 0.94174 0.96291 0.95388 1.20976 0.99020 0.98230 0.94334 1.21748 1.02778 0.99646 0.95426 1.21721 0.85992 0.90320 0.96097 0.90626 1.42682 1.39318 1.49409 1.06055 1.19082 1.09764 1.17768 0.88338 0.92184 1.25343 0.99232 1.00998 0.99682 1.69860 1.26749 1.38248 1.28618 0.85622 0.78649 0.77739 0.81139 1.20402 1.22327 1.18413 1.23839 0.98443 0.98658 0.96824 0.91345 1.21571 0.99114 1.01720 0.96258 1.23651 0.90047 0.96159 0.86735 0.87896 1.87934 1.24487 1.77276 1.40429 1.22942 0.83258 0.98490 1.02673 0.93260 0.91867 0.94455 0.90267 0.91423 0.93879 0.93748 0.93353 0.90759 0.92361 0.80040 0.93541 0.91593 0.92218 0.94660 0.88833 0.93996 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.44 71.98 0.68 -3.68 16 2 C -0.10 -2.51 4.87 30.60 0.15 -2.36 16 3 C -0.08 -2.48 0.53 -51.65 -0.03 -2.51 16 4 C -0.09 -2.76 3.27 30.60 0.10 -2.66 16 5 C -0.14 -3.48 9.17 71.98 0.66 -2.82 16 6 C 0.17 6.32 2.88 45.52 0.13 6.46 16 7 H 0.08 2.94 8.02 -2.39 -0.02 2.93 16 8 N -0.73 -34.47 5.10 -320.44 -1.63 -36.10 16 9 C -0.22 -12.45 10.45 84.03 0.88 -11.57 16 10 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 11 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 12 N -0.98 -63.74 13.97 21.65 0.30 -63.44 16 13 Si 0.94 46.88 27.74 68.60 1.90 48.78 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 15 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 16 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 17 C -0.16 -5.19 3.64 -10.21 -0.04 -5.23 16 18 H 0.07 2.60 7.61 -2.39 -0.02 2.58 16 19 C -0.13 -3.90 9.72 71.98 0.70 -3.20 16 20 C 0.09 2.46 3.31 31.18 0.10 2.57 16 21 H 0.10 2.30 7.66 -2.39 -0.02 2.29 16 22 O -0.38 -9.69 7.85 -148.98 -1.17 -10.86 16 23 C 0.02 0.40 10.85 113.37 1.23 1.63 16 24 H 0.05 1.42 7.26 -2.39 -0.02 1.40 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.35 7.60 -2.39 -0.02 1.33 16 27 H 0.08 1.73 6.75 -2.39 -0.02 1.71 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.49 6.55 -2.39 -0.02 1.47 16 30 H 0.04 1.54 7.30 -2.39 -0.02 1.52 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.80 5.99 -2.39 -0.01 1.79 16 33 H 0.06 1.32 6.92 -2.39 -0.02 1.30 16 34 H 0.37 17.01 3.86 -92.71 -0.36 16.66 16 35 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 36 H 0.07 1.70 7.96 -2.39 -0.02 1.68 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -66.30 313.99 5.00 -61.30 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.56 Total: 26.89 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 5.03 Total: -26.57 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -1.33 Total: -99.54 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.17 Total: -10.86 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.90 Total: 48.78 kcal Total: -66.30 5.00 -61.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191412368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.051 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds