Wall clock time and date at job start Sun Mar 29 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47128 * 2 1 4 4 C 1.53000 * 109.46873 * 120.00031 * 2 1 3 5 5 C 1.52998 * 109.47231 * 65.00073 * 4 2 1 6 6 O 1.42907 * 109.46794 * 179.97438 * 5 4 2 7 7 C 1.42905 * 113.99406 * 180.02562 * 6 5 4 8 8 C 1.53065 * 109.44450 * 89.79940 * 7 6 5 9 9 C 1.53192 * 109.29648 * 181.23287 * 8 7 6 10 10 N 1.46922 * 108.89269 * 305.57538 * 9 8 7 11 11 C 1.36942 * 120.62796 * 233.51528 * 10 9 8 12 12 H 1.08007 * 119.99636 * 151.83092 * 11 10 9 13 13 C 1.38806 * 120.00203 * 331.83144 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08250 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.07925 * 13 11 10 16 16 H 1.48503 * 109.47195 * 89.99708 * 15 13 11 17 17 H 1.48498 * 109.47355 * 210.00264 * 15 13 11 18 18 H 1.48504 * 109.46850 * 330.00278 * 15 13 11 19 19 C 1.46924 * 118.73925 * 53.53382 * 10 9 8 20 20 C 1.53049 * 109.45336 * 209.99881 * 7 6 5 21 21 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46918 * 300.00042 * 1 2 3 23 23 H 1.08991 * 109.47332 * 59.99755 * 1 2 3 24 24 H 1.09000 * 109.46918 * 239.99958 * 2 1 3 25 25 H 1.08999 * 109.47173 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46938 * 299.99749 * 3 2 1 27 27 H 1.09000 * 109.47255 * 60.00164 * 3 2 1 28 28 H 1.08994 * 109.47198 * 304.99556 * 4 2 1 29 29 H 1.09006 * 109.46854 * 184.99612 * 4 2 1 30 30 H 1.09003 * 109.47366 * 59.99908 * 5 4 2 31 31 H 1.08998 * 109.47435 * 299.99472 * 5 4 2 32 32 H 1.08996 * 109.45890 * 329.96674 * 7 6 5 33 33 H 1.09005 * 109.39523 * 61.35351 * 8 7 6 34 34 H 1.09004 * 109.62174 * 301.25038 * 8 7 6 35 35 H 1.09003 * 109.58615 * 185.71531 * 9 8 7 36 36 H 1.08998 * 109.58372 * 65.43477 * 9 8 7 37 37 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 38 38 H 1.09007 * 109.58325 * 66.18371 * 19 10 9 39 39 H 1.08996 * 109.58499 * 186.46256 * 19 10 9 40 40 H 1.09002 * 109.49883 * 58.68028 * 20 7 6 41 41 H 1.08997 * 109.52642 * 298.59336 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 8 2.1121 -2.8692 2.3546 7 6 1.7862 -4.2599 2.3965 8 6 2.9009 -5.0650 1.7240 9 6 2.5337 -6.5521 1.7434 10 7 2.2466 -6.9533 3.1274 11 6 2.8918 -8.0208 3.6925 12 1 3.0480 -8.0536 4.7607 13 6 3.3452 -9.0606 2.8925 14 7 2.8819 -9.1993 1.6683 15 14 4.6128 -10.2632 3.5531 16 1 3.9205 -11.4008 4.2102 17 1 5.4450 -10.7704 2.4328 18 1 5.4805 -9.5741 4.5419 19 6 1.2538 -6.1875 3.8934 20 6 1.6367 -4.7048 3.8532 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2617 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 2.0698 -2.6550 0.3002 31 1 0.5489 -2.2724 1.1421 32 1 0.8485 -4.4293 1.8671 33 1 3.8343 -4.9136 2.2663 34 1 3.0209 -4.7333 0.6927 35 1 3.3673 -7.1394 1.3582 36 1 1.6522 -6.7189 1.1243 37 1 3.1984 -9.9261 1.1093 38 1 0.2671 -6.3223 3.4501 39 1 1.2411 -6.5360 4.9261 40 1 0.8576 -4.1147 4.3358 41 1 2.5811 -4.5586 4.3775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193861443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:06 Heat of formation + Delta-G solvation = -55.474618 kcal Electronic energy + Delta-G solvation = -17858.405603 eV Core-core repulsion = 15158.893218 eV Total energy + Delta-G solvation = -2699.512386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.60737 -36.96383 -35.60557 -32.54516 -30.26964 -29.83059 -28.76851 -27.34690 -24.88383 -23.11351 -22.07837 -21.68740 -20.10030 -19.11501 -16.83727 -16.24573 -15.69682 -15.03413 -14.66689 -14.32983 -13.99876 -13.55728 -13.46042 -13.23768 -12.92307 -12.65154 -12.37531 -12.02851 -11.74128 -11.71051 -11.42464 -11.13723 -10.94118 -10.82038 -10.77752 -10.68610 -10.58842 -10.24509 -10.16842 -9.95338 -9.78938 -9.56800 -8.87842 -8.43282 -6.66941 -5.77960 -3.20279 3.38774 3.45681 3.48832 3.94772 4.51234 4.72513 4.77753 4.89961 5.21749 5.32577 5.41004 5.43285 5.50487 5.50864 5.55998 5.62973 5.66277 5.69769 5.76193 5.83861 5.87969 5.94353 6.04451 6.15497 6.22428 6.25840 6.33301 6.48047 6.61983 6.63540 6.72188 6.80641 7.00914 7.38235 7.63008 7.73687 7.80985 8.46465 9.22306 9.85696 10.42550 11.30979 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050061 B = 0.004278 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.187928 B = 6543.131460 C = 6694.260568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.113 4.113 5 C 0.062 3.938 6 O -0.391 6.391 7 C 0.099 3.901 8 C -0.159 4.159 9 C 0.173 3.827 10 N -0.593 5.593 11 C -0.252 4.252 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.279 1.279 19 C 0.147 3.853 20 C -0.127 4.127 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.017 0.983 37 H 0.254 0.746 38 H 0.018 0.982 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 16.591 -3.028 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.150 4.150 5 C -0.015 4.015 6 O -0.311 6.311 7 C 0.042 3.958 8 C -0.199 4.199 9 C 0.047 3.953 10 N -0.316 5.316 11 C -0.382 4.382 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.204 1.204 19 C 0.021 3.979 20 C -0.166 4.166 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.264 16.534 -2.995 17.117 hybrid contribution 0.493 -0.792 -0.040 0.934 sum -2.771 15.741 -3.035 16.269 Atomic orbital electron populations 1.21923 0.95244 1.02041 1.01628 1.21062 0.95961 0.96214 0.98201 1.21820 1.01036 0.95789 1.01644 1.21570 1.01699 0.93777 0.97985 1.22495 0.97564 0.92564 0.88891 1.87875 1.78900 1.22746 1.41596 1.22110 0.96951 0.79367 0.97401 1.22707 0.98927 0.99547 0.98672 1.20746 0.99991 0.88796 0.85777 1.44089 1.43820 1.32575 1.11099 1.19194 1.30244 0.96123 0.92648 0.91637 1.25052 1.00684 0.96969 0.96968 1.70030 1.43490 1.32344 1.08982 0.86295 0.81538 0.81013 0.77922 1.21386 1.21552 1.20440 1.20891 0.91812 0.88847 0.96370 1.22137 1.01608 0.98408 0.94495 0.92349 0.92620 0.92830 0.91091 0.92628 0.92746 0.92669 0.91358 0.91286 0.93802 0.93724 0.93238 0.91977 0.93408 0.89251 0.96482 0.93644 0.96454 0.92255 0.92694 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.95 37.16 0.33 -1.00 16 2 C -0.10 -0.90 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.17 9.19 37.15 0.34 -0.83 16 4 C -0.11 -1.29 5.05 -26.73 -0.14 -1.43 16 5 C 0.06 0.86 5.50 37.16 0.20 1.06 16 6 O -0.39 -6.83 9.99 -35.23 -0.35 -7.18 16 7 C 0.10 1.85 2.57 -26.67 -0.07 1.78 16 8 C -0.16 -3.27 5.70 -26.60 -0.15 -3.42 16 9 C 0.17 4.25 5.30 -3.71 -0.02 4.23 16 10 N -0.59 -15.29 3.00 -172.32 -0.52 -15.81 16 11 C -0.25 -7.06 9.58 -15.06 -0.14 -7.21 16 12 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 13 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 14 N -0.90 -26.50 11.20 55.49 0.62 -25.87 16 15 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 20 C -0.13 -2.41 5.73 -26.61 -0.15 -2.56 16 21 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.61 7.84 -51.93 -0.41 0.20 16 31 H 0.04 0.59 6.51 -51.93 -0.34 0.25 16 32 H 0.05 0.91 7.79 -51.93 -0.40 0.50 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16 35 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -29.63 319.58 -8.30 -37.92 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.67 Total: -3.31 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.17 Total: -7.42 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.11 Total: -41.68 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.35 Total: -7.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.63 -8.30 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193861443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.553 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds