Wall clock time and date at job start Sun Mar 29 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47128 * 2 1 4 4 C 1.53000 * 109.46873 * 120.00031 * 2 1 3 5 5 C 1.52998 * 109.47231 * 65.00073 * 4 2 1 6 6 O 1.42907 * 109.46794 * 179.97438 * 5 4 2 7 7 C 1.42905 * 113.99406 * 180.02562 * 6 5 4 8 8 C 1.53065 * 109.44450 * 89.79940 * 7 6 5 9 9 C 1.53192 * 109.29648 * 181.23287 * 8 7 6 10 10 N 1.46922 * 108.89269 * 305.57538 * 9 8 7 11 11 C 1.36942 * 120.62796 * 233.51528 * 10 9 8 12 12 H 1.08007 * 119.99636 * 151.83092 * 11 10 9 13 13 C 1.38806 * 120.00203 * 331.83144 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08250 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.07925 * 13 11 10 16 16 H 1.48503 * 109.47195 * 89.99708 * 15 13 11 17 17 H 1.48498 * 109.47355 * 210.00264 * 15 13 11 18 18 H 1.48504 * 109.46850 * 330.00278 * 15 13 11 19 19 C 1.46924 * 118.73925 * 53.53382 * 10 9 8 20 20 C 1.53049 * 109.45336 * 209.99881 * 7 6 5 21 21 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46918 * 300.00042 * 1 2 3 23 23 H 1.08991 * 109.47332 * 59.99755 * 1 2 3 24 24 H 1.09000 * 109.46918 * 239.99958 * 2 1 3 25 25 H 1.08999 * 109.47173 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46938 * 299.99749 * 3 2 1 27 27 H 1.09000 * 109.47255 * 60.00164 * 3 2 1 28 28 H 1.08994 * 109.47198 * 304.99556 * 4 2 1 29 29 H 1.09006 * 109.46854 * 184.99612 * 4 2 1 30 30 H 1.09003 * 109.47366 * 59.99908 * 5 4 2 31 31 H 1.08998 * 109.47435 * 299.99472 * 5 4 2 32 32 H 1.08996 * 109.45890 * 329.96674 * 7 6 5 33 33 H 1.09005 * 109.39523 * 61.35351 * 8 7 6 34 34 H 1.09004 * 109.62174 * 301.25038 * 8 7 6 35 35 H 1.09003 * 109.58615 * 185.71531 * 9 8 7 36 36 H 1.08998 * 109.58372 * 65.43477 * 9 8 7 37 37 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 38 38 H 1.09007 * 109.58325 * 66.18371 * 19 10 9 39 39 H 1.08996 * 109.58499 * 186.46256 * 19 10 9 40 40 H 1.09002 * 109.49883 * 58.68028 * 20 7 6 41 41 H 1.08997 * 109.52642 * 298.59336 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 8 2.1121 -2.8692 2.3546 7 6 1.7862 -4.2599 2.3965 8 6 2.9009 -5.0650 1.7240 9 6 2.5337 -6.5521 1.7434 10 7 2.2466 -6.9533 3.1274 11 6 2.8918 -8.0208 3.6925 12 1 3.0480 -8.0536 4.7607 13 6 3.3452 -9.0606 2.8925 14 7 2.8819 -9.1993 1.6683 15 14 4.6128 -10.2632 3.5531 16 1 3.9205 -11.4008 4.2102 17 1 5.4450 -10.7704 2.4328 18 1 5.4805 -9.5741 4.5419 19 6 1.2538 -6.1875 3.8934 20 6 1.6367 -4.7048 3.8532 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6054 -0.2617 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 2.0698 -2.6550 0.3002 31 1 0.5489 -2.2724 1.1421 32 1 0.8485 -4.4293 1.8671 33 1 3.8343 -4.9136 2.2663 34 1 3.0209 -4.7333 0.6927 35 1 3.3673 -7.1394 1.3582 36 1 1.6522 -6.7189 1.1243 37 1 3.1984 -9.9261 1.1093 38 1 0.2671 -6.3223 3.4501 39 1 1.2411 -6.5360 4.9261 40 1 0.8576 -4.1147 4.3358 41 1 2.5811 -4.5586 4.3775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193861443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:06 Heat of formation + Delta-G solvation = -71.552121 kcal Electronic energy + Delta-G solvation = -17859.102776 eV Core-core repulsion = 15158.893218 eV Total energy + Delta-G solvation = -2700.209558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06446 -38.24464 -36.88281 -34.43131 -31.98894 -31.53815 -29.99386 -28.01099 -26.82517 -24.28502 -23.79876 -23.33864 -21.08574 -20.66628 -18.80263 -17.61900 -16.85395 -16.73364 -16.05854 -15.69442 -15.36513 -15.05530 -14.90199 -14.68378 -14.38976 -14.01505 -13.42631 -13.26491 -13.06534 -12.99537 -12.92572 -12.59803 -12.53804 -12.35539 -12.11461 -11.94451 -11.82250 -11.75030 -11.65205 -11.49044 -11.34206 -11.24784 -10.60485 -10.27358 -8.72856 -7.90027 -5.35625 1.46280 1.48079 1.58136 2.50456 2.69118 3.26625 3.64001 3.89139 3.92650 4.03260 4.06255 4.11108 4.26465 4.33918 4.45979 4.50497 4.57629 4.63788 4.75797 4.80736 4.84125 4.87321 4.95029 4.96351 5.03401 5.08834 5.13789 5.14016 5.16489 5.31570 5.33108 5.46207 5.46707 5.50483 5.61964 5.68693 6.35905 6.38306 7.12169 7.82398 8.34652 9.17189 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050061 B = 0.004278 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.187928 B = 6543.131460 C = 6694.260568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.107 4.107 5 C 0.054 3.946 6 O -0.400 6.400 7 C 0.106 3.894 8 C -0.146 4.146 9 C 0.181 3.819 10 N -0.613 5.613 11 C -0.267 4.267 12 H 0.068 0.932 13 C -0.050 4.050 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.282 1.282 17 H -0.291 1.291 18 H -0.271 1.271 19 C 0.144 3.856 20 C -0.117 4.117 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.001 0.999 37 H 0.251 0.749 38 H 0.021 0.979 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 18.087 -2.708 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.145 4.145 5 C -0.022 4.022 6 O -0.320 6.320 7 C 0.049 3.951 8 C -0.186 4.186 9 C 0.055 3.945 10 N -0.337 5.337 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.245 4.245 14 N -0.581 5.581 15 Si 0.796 3.204 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.196 1.196 19 C 0.019 3.981 20 C -0.156 4.156 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.504 18.062 -2.660 18.590 hybrid contribution 0.516 -1.207 -0.155 1.322 sum -2.988 16.854 -2.814 17.347 Atomic orbital electron populations 1.21924 0.94706 1.01810 1.02382 1.21055 0.96395 0.96778 0.96980 1.21805 1.01056 0.94885 1.02364 1.21559 1.01431 0.92290 0.99187 1.22757 0.98254 0.93588 0.87589 1.87860 1.79280 1.21633 1.43189 1.21891 0.96160 0.80091 0.96971 1.22503 0.99093 0.97099 0.99880 1.20521 0.97937 0.90851 0.85222 1.44362 1.44957 1.32731 1.11611 1.19532 1.30463 0.96772 0.92961 0.91480 1.25827 1.02525 0.98869 0.97321 1.70177 1.44717 1.33026 1.10160 0.85262 0.79054 0.78811 0.77231 1.20884 1.21754 1.19629 1.21035 0.91000 0.90106 0.96002 1.21976 1.02011 0.96683 0.94928 0.93048 0.92348 0.91662 0.91157 0.92642 0.91630 0.92378 0.91260 0.91813 0.93907 0.92657 0.92596 0.93243 0.91781 0.92573 0.98091 0.94009 0.96142 0.91850 0.89770 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.95 71.98 0.64 -1.68 16 2 C -0.09 -1.56 2.92 -10.79 -0.03 -1.59 16 3 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 4 C -0.11 -2.26 5.05 30.59 0.15 -2.10 16 5 C 0.05 1.41 5.50 71.98 0.40 1.80 16 6 O -0.40 -13.17 9.99 -148.98 -1.49 -14.66 16 7 C 0.11 3.82 2.57 30.63 0.08 3.89 16 8 C -0.15 -5.96 5.70 30.68 0.17 -5.78 16 9 C 0.18 9.03 5.30 86.36 0.46 9.49 16 10 N -0.61 -31.83 3.00 -699.10 -2.09 -33.92 16 11 C -0.27 -15.06 9.58 84.03 0.81 -14.25 16 12 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 13 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 14 N -0.93 -55.94 11.20 21.65 0.24 -55.70 16 15 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.14 6.12 6.52 86.36 0.56 6.68 16 20 C -0.12 -4.23 5.73 30.67 0.18 -4.05 16 21 H 0.05 0.85 6.56 -2.39 -0.02 0.84 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.04 1.12 7.84 -2.39 -0.02 1.10 16 31 H 0.06 1.33 6.51 -2.39 -0.02 1.31 16 32 H 0.06 1.95 7.79 -2.39 -0.02 1.93 16 33 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 34 H 0.06 2.36 7.84 -2.38 -0.02 2.34 16 35 H 0.06 3.16 6.06 -2.39 -0.01 3.15 16 36 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -62.88 319.58 4.14 -58.73 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.95 Total: 9.48 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 4.50 Total: -11.35 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -1.85 Total: -89.62 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.49 Total: -14.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -62.88 4.14 -58.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193861443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.817 kcal (2) G-P(sol) polarization free energy of solvation -62.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds