Wall clock time and date at job start Sun Mar 29 2020 23:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47437 * 2 1 4 4 C 1.42898 * 114.00271 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.50490 * 29.91352 * 4 3 2 6 6 C 1.53124 * 109.53260 * 269.81877 * 4 3 2 7 7 C 1.53117 * 109.15860 * 182.38431 * 6 4 3 8 8 C 1.53035 * 109.27969 * 57.65634 * 7 6 4 9 9 N 1.46840 * 109.52148 * 300.81539 * 8 7 6 10 10 C 1.46904 * 111.00181 * 185.84043 * 9 8 7 11 11 H 1.08996 * 109.46595 * 55.12764 * 10 9 8 12 12 C 1.50701 * 109.47052 * 295.13379 * 10 9 8 13 13 H 1.08007 * 119.99767 * 359.97438 * 12 10 9 14 14 C 1.37870 * 120.00270 * 179.97438 * 12 10 9 15 15 N 1.31518 * 120.00345 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 120.00028 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46899 * 89.99743 * 16 14 12 18 18 H 1.48494 * 109.47550 * 210.00119 * 16 14 12 19 19 H 1.48503 * 109.47010 * 330.00539 * 16 14 12 20 20 C 1.52998 * 109.47272 * 175.13147 * 10 9 8 21 21 C 1.52997 * 109.46970 * 297.23103 * 20 10 9 22 22 C 1.46847 * 111.19707 * 61.74460 * 9 8 7 23 23 H 1.09002 * 109.47283 * 60.00196 * 1 2 3 24 24 H 1.08998 * 109.47920 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47012 * 300.00285 * 1 2 3 26 26 H 1.09003 * 109.47012 * 239.99715 * 2 1 3 27 27 H 1.09002 * 109.47283 * 119.99803 * 2 1 3 28 28 H 1.08997 * 109.52253 * 302.28847 * 6 4 3 29 29 H 1.09003 * 109.52287 * 62.41605 * 6 4 3 30 30 H 1.09005 * 109.49805 * 177.59815 * 7 6 4 31 31 H 1.09003 * 109.50130 * 297.66932 * 7 6 4 32 32 H 1.09008 * 109.46102 * 180.80267 * 8 7 6 33 33 H 1.08996 * 109.46219 * 60.83799 * 8 7 6 34 34 H 0.97005 * 119.99963 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.46816 * 57.23666 * 20 10 9 36 36 H 1.09002 * 109.46757 * 177.23053 * 20 10 9 37 37 H 1.08991 * 109.47324 * 305.24407 * 21 20 10 38 38 H 1.08996 * 109.47014 * 65.24884 * 21 20 10 39 39 H 1.09006 * 109.46853 * 185.24145 * 21 20 10 40 40 H 1.09002 * 109.46452 * 58.27217 * 22 9 8 41 41 H 1.08999 * 109.46403 * 178.24663 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8638 0.6010 -0.5133 6 6 3.9415 1.5048 1.4423 7 6 5.4619 1.6855 1.4319 8 6 5.8135 2.9648 0.6691 9 7 5.3043 2.8723 -0.7051 10 6 5.7425 4.0222 -1.5074 11 1 6.8290 4.0996 -1.4682 12 6 5.1289 5.2830 -0.9553 13 1 4.4781 5.2348 -0.0946 14 6 5.3982 6.4980 -1.5487 15 7 4.8631 7.5984 -1.0665 16 14 6.5243 6.5814 -3.0368 17 1 5.7189 6.4356 -4.2758 18 1 7.2262 7.8899 -3.0537 19 1 7.5231 5.4849 -2.9638 20 6 5.2968 3.8311 -2.9585 21 6 5.9742 2.5889 -3.5407 22 6 3.8414 2.7458 -0.7219 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.4788 2.3409 1.9667 29 1 3.6879 0.5728 1.9475 30 1 5.8263 1.7609 2.4565 31 1 5.9267 0.8297 0.9424 32 1 6.8963 3.0889 0.6477 33 1 5.3598 3.8212 1.1678 34 1 5.0523 8.4531 -1.4843 35 1 4.2146 3.7046 -2.9925 36 1 5.5787 4.7066 -3.5434 37 1 7.0542 2.6747 -3.4220 38 1 5.6201 1.7021 -3.0151 39 1 5.7305 2.5050 -4.5999 40 1 3.3968 3.6033 -0.2167 41 1 3.4917 2.7107 -1.7536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220095797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:39 Heat of formation + Delta-G solvation = -52.382554 kcal Electronic energy + Delta-G solvation = -18769.607833 eV Core-core repulsion = 16070.229529 eV Total energy + Delta-G solvation = -2699.378304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08796 -37.17155 -34.49049 -32.02169 -31.46622 -30.66037 -28.88374 -27.05220 -23.82656 -22.69930 -22.64831 -21.82607 -19.91312 -19.01147 -16.67376 -16.54690 -15.64930 -15.39613 -14.67679 -14.29617 -13.68456 -13.49034 -13.34518 -13.02908 -12.97042 -12.59704 -12.32033 -12.00816 -11.83422 -11.62940 -11.56903 -11.33302 -11.09860 -10.76405 -10.56708 -10.42593 -10.33037 -10.10819 -9.91242 -9.63699 -9.54775 -9.22721 -9.03116 -8.55160 -7.17263 -6.10117 -4.10850 3.26753 3.37382 3.39406 3.82834 4.38428 4.95890 5.06448 5.18878 5.23187 5.25444 5.35391 5.40598 5.44121 5.66700 5.69752 5.91954 5.94779 5.96794 6.01688 6.06689 6.11848 6.19034 6.21879 6.28763 6.41558 6.45899 6.60266 6.68683 6.74088 6.82294 6.85045 6.94146 7.09999 7.24730 7.54825 7.58509 8.09415 8.15858 8.46322 8.92380 9.53017 11.02724 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.006984 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.670980 B = 4008.056172 C = 4080.945675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.384 6.384 4 C 0.094 3.906 5 H 0.060 0.940 6 C -0.138 4.138 7 C -0.112 4.112 8 C 0.059 3.941 9 N -0.523 5.523 10 C 0.183 3.817 11 H 0.041 0.959 12 C -0.544 4.544 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.897 5.897 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.298 1.298 19 H -0.264 1.264 20 C -0.124 4.124 21 C -0.141 4.141 22 C 0.064 3.936 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -14.402 1.405 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.302 6.302 4 C 0.036 3.964 5 H 0.078 0.922 6 C -0.176 4.176 7 C -0.150 4.150 8 C -0.070 4.070 9 N -0.248 5.248 10 C 0.076 3.924 11 H 0.058 0.942 12 C -0.583 4.583 13 H 0.095 0.905 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.226 1.226 19 H -0.189 1.189 20 C -0.162 4.162 21 C -0.199 4.199 22 C -0.064 4.064 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.175 -14.473 1.180 14.683 hybrid contribution 0.327 0.800 -0.430 0.965 sum -1.848 -13.673 0.750 13.818 Atomic orbital electron populations 1.21735 0.94200 1.01715 1.03134 1.22415 0.95205 0.84647 0.99563 1.87911 1.21782 1.25498 1.95039 1.22164 0.79625 0.99416 0.95223 0.92210 1.22044 0.96661 1.01476 0.97395 1.21555 0.94773 0.99109 0.99598 1.21917 0.99749 0.95703 0.89623 1.62248 1.08604 1.42938 1.11036 1.19713 0.96015 0.87551 0.89151 0.94167 1.21624 1.30468 0.90464 1.15740 0.90548 1.24979 0.95301 0.95644 0.96941 1.69922 1.44052 0.98420 1.41117 0.86860 0.81432 0.76622 0.83359 1.20547 1.22619 1.18883 1.21976 1.00403 0.95963 0.97864 1.21709 1.00164 0.99532 0.98462 1.21865 0.89624 0.94674 1.00239 0.91850 0.91561 0.91992 0.93720 0.93929 0.91478 0.92858 0.92047 0.91892 0.91574 0.93688 0.92683 0.92095 0.93506 0.93780 0.92257 0.94858 0.93007 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.15 0.38 -1.21 16 2 C 0.06 0.73 6.47 37.15 0.24 0.97 16 3 O -0.38 -6.35 9.99 -35.23 -0.35 -6.70 16 4 C 0.09 1.55 2.77 -26.65 -0.07 1.48 16 5 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 6 C -0.14 -2.11 5.62 -26.61 -0.15 -2.26 16 7 C -0.11 -1.69 6.09 -26.65 -0.16 -1.86 16 8 C 0.06 1.10 5.12 -3.84 -0.02 1.08 16 9 N -0.52 -10.58 4.10 -228.09 -0.93 -11.51 16 10 C 0.18 4.25 1.36 -68.86 -0.09 4.16 16 11 H 0.04 0.98 7.14 -51.93 -0.37 0.61 16 12 C -0.54 -14.90 7.77 -34.44 -0.27 -15.16 16 13 H 0.08 2.30 6.08 -52.48 -0.32 1.98 16 14 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 15 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 16 Si 0.89 21.89 24.40 -169.99 -4.15 17.74 16 17 H -0.28 -6.75 6.84 56.52 0.39 -6.36 16 18 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 19 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 20 C -0.12 -2.70 4.67 -26.73 -0.12 -2.83 16 21 C -0.14 -2.57 9.71 37.16 0.36 -2.21 16 22 C 0.06 1.28 4.45 -3.84 -0.02 1.26 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.04 0.48 7.95 -51.93 -0.41 0.07 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.22 8.08 -51.92 -0.42 0.80 16 33 H 0.04 0.96 6.96 -51.93 -0.36 0.60 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.06 1.33 6.15 -51.93 -0.32 1.01 16 36 H 0.05 1.08 3.23 -51.93 -0.17 0.91 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 1.20 6.63 -51.93 -0.34 0.85 16 41 H 0.07 1.52 5.97 -51.93 -0.31 1.21 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -29.39 306.01 -7.31 -36.69 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.23 Total: 0.27 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.02 Total: -14.55 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.16 Total: -38.06 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.35 Total: -6.70 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.39 -7.31 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220095797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.691 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds