Wall clock time and date at job start Sun Mar 29 2020 23:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47437 * 2 1 4 4 C 1.42898 * 114.00271 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.50490 * 29.91352 * 4 3 2 6 6 C 1.53124 * 109.53260 * 269.81877 * 4 3 2 7 7 C 1.53117 * 109.15860 * 182.38431 * 6 4 3 8 8 C 1.53035 * 109.27969 * 57.65634 * 7 6 4 9 9 N 1.46840 * 109.52148 * 300.81539 * 8 7 6 10 10 C 1.46904 * 111.00181 * 185.84043 * 9 8 7 11 11 H 1.08996 * 109.46595 * 55.12764 * 10 9 8 12 12 C 1.50701 * 109.47052 * 295.13379 * 10 9 8 13 13 H 1.08007 * 119.99767 * 359.97438 * 12 10 9 14 14 C 1.37870 * 120.00270 * 179.97438 * 12 10 9 15 15 N 1.31518 * 120.00345 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 120.00028 * 359.97438 * 14 12 10 17 17 H 1.48498 * 109.46899 * 89.99743 * 16 14 12 18 18 H 1.48494 * 109.47550 * 210.00119 * 16 14 12 19 19 H 1.48503 * 109.47010 * 330.00539 * 16 14 12 20 20 C 1.52998 * 109.47272 * 175.13147 * 10 9 8 21 21 C 1.52997 * 109.46970 * 297.23103 * 20 10 9 22 22 C 1.46847 * 111.19707 * 61.74460 * 9 8 7 23 23 H 1.09002 * 109.47283 * 60.00196 * 1 2 3 24 24 H 1.08998 * 109.47920 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47012 * 300.00285 * 1 2 3 26 26 H 1.09003 * 109.47012 * 239.99715 * 2 1 3 27 27 H 1.09002 * 109.47283 * 119.99803 * 2 1 3 28 28 H 1.08997 * 109.52253 * 302.28847 * 6 4 3 29 29 H 1.09003 * 109.52287 * 62.41605 * 6 4 3 30 30 H 1.09005 * 109.49805 * 177.59815 * 7 6 4 31 31 H 1.09003 * 109.50130 * 297.66932 * 7 6 4 32 32 H 1.09008 * 109.46102 * 180.80267 * 8 7 6 33 33 H 1.08996 * 109.46219 * 60.83799 * 8 7 6 34 34 H 0.97005 * 119.99963 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.46816 * 57.23666 * 20 10 9 36 36 H 1.09002 * 109.46757 * 177.23053 * 20 10 9 37 37 H 1.08991 * 109.47324 * 305.24407 * 21 20 10 38 38 H 1.08996 * 109.47014 * 65.24884 * 21 20 10 39 39 H 1.09006 * 109.46853 * 185.24145 * 21 20 10 40 40 H 1.09002 * 109.46452 * 58.27217 * 22 9 8 41 41 H 1.08999 * 109.46403 * 178.24663 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8638 0.6010 -0.5133 6 6 3.9415 1.5048 1.4423 7 6 5.4619 1.6855 1.4319 8 6 5.8135 2.9648 0.6691 9 7 5.3043 2.8723 -0.7051 10 6 5.7425 4.0222 -1.5074 11 1 6.8290 4.0996 -1.4682 12 6 5.1289 5.2830 -0.9553 13 1 4.4781 5.2348 -0.0946 14 6 5.3982 6.4980 -1.5487 15 7 4.8631 7.5984 -1.0665 16 14 6.5243 6.5814 -3.0368 17 1 5.7189 6.4356 -4.2758 18 1 7.2262 7.8899 -3.0537 19 1 7.5231 5.4849 -2.9638 20 6 5.2968 3.8311 -2.9585 21 6 5.9742 2.5889 -3.5407 22 6 3.8414 2.7458 -0.7219 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.4788 2.3409 1.9667 29 1 3.6879 0.5728 1.9475 30 1 5.8263 1.7609 2.4565 31 1 5.9267 0.8297 0.9424 32 1 6.8963 3.0889 0.6477 33 1 5.3598 3.8212 1.1678 34 1 5.0523 8.4531 -1.4843 35 1 4.2146 3.7046 -2.9925 36 1 5.5787 4.7066 -3.5434 37 1 7.0542 2.6747 -3.4220 38 1 5.6201 1.7021 -3.0151 39 1 5.7305 2.5050 -4.5999 40 1 3.3968 3.6033 -0.2167 41 1 3.4917 2.7107 -1.7536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220095797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:38 Heat of formation + Delta-G solvation = -72.431521 kcal Electronic energy + Delta-G solvation = -18770.477221 eV Core-core repulsion = 16070.229529 eV Total energy + Delta-G solvation = -2700.247692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55723 -38.58347 -36.05696 -34.12668 -32.61049 -32.08237 -30.26017 -28.92308 -25.51720 -24.23002 -23.78486 -23.23740 -21.49203 -20.72437 -18.66565 -17.92028 -17.20123 -16.50844 -16.39478 -15.80759 -15.39213 -15.12360 -14.74100 -14.54943 -14.28970 -14.15903 -13.75233 -13.52613 -13.25691 -13.02174 -12.98572 -12.69288 -12.51748 -12.37691 -12.14542 -11.88773 -11.79225 -11.61691 -11.49688 -11.34290 -11.25590 -11.12709 -10.69306 -10.29901 -8.98152 -8.32557 -6.37264 1.29363 1.34153 1.45171 2.29641 2.60562 3.02734 3.45291 3.87995 3.95245 4.11347 4.20151 4.26841 4.34535 4.39453 4.43002 4.49813 4.53488 4.62457 4.66628 4.76008 4.89897 4.95260 4.97634 5.03262 5.06567 5.07488 5.13865 5.14705 5.22828 5.25977 5.30393 5.41382 5.46490 5.53737 5.60388 6.13336 6.31863 6.36554 6.53174 6.70668 7.30623 8.84301 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.006984 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.670980 B = 4008.056172 C = 4080.945675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.411 6.411 4 C 0.102 3.898 5 H 0.081 0.919 6 C -0.135 4.135 7 C -0.101 4.101 8 C 0.054 3.946 9 N -0.508 5.508 10 C 0.185 3.815 11 H 0.038 0.962 12 C -0.539 4.539 13 H 0.030 0.970 14 C 0.013 3.987 15 N -0.950 5.950 16 Si 0.950 3.050 17 H -0.268 1.268 18 H -0.300 1.300 19 H -0.241 1.241 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.070 3.930 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.004 0.996 34 H 0.264 0.736 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.003 0.997 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -17.705 0.419 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.331 6.331 4 C 0.045 3.955 5 H 0.099 0.901 6 C -0.173 4.173 7 C -0.138 4.138 8 C -0.074 4.074 9 N -0.232 5.232 10 C 0.076 3.924 11 H 0.056 0.944 12 C -0.578 4.578 13 H 0.048 0.952 14 C -0.184 4.184 15 N -0.590 5.590 16 Si 0.777 3.223 17 H -0.194 1.194 18 H -0.228 1.228 19 H -0.164 1.164 20 C -0.163 4.163 21 C -0.189 4.189 22 C -0.059 4.059 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.021 0.979 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.087 -17.815 0.202 17.849 hybrid contribution -0.123 1.820 -0.024 1.825 sum -1.210 -15.995 0.177 16.041 Atomic orbital electron populations 1.21769 0.93066 1.03410 1.02362 1.22721 0.96212 0.82785 1.00932 1.87893 1.21501 1.28464 1.95216 1.21998 0.80261 0.97607 0.95677 0.90101 1.22027 0.96595 1.02082 0.96558 1.21504 0.94712 0.97242 1.00381 1.22031 0.99624 0.96762 0.88984 1.62316 1.08646 1.40690 1.11538 1.19636 0.95379 0.86552 0.90810 0.94389 1.21879 1.29087 0.92740 1.14100 0.95215 1.25873 0.97126 0.95129 1.00291 1.70083 1.46437 0.99187 1.43272 0.85822 0.79805 0.77057 0.79589 1.19424 1.22845 1.16448 1.21898 1.00342 0.97618 0.96402 1.21619 1.00025 0.97490 0.99756 1.21800 0.89076 0.95214 0.99784 0.92788 0.88595 0.92646 0.92499 0.92235 0.93939 0.89609 0.89826 0.89635 0.91063 0.97726 0.92677 0.92976 0.94633 0.93147 0.91357 0.92499 0.97869 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 1.11 6.47 71.98 0.47 1.58 16 3 O -0.41 -13.27 9.99 -148.98 -1.49 -14.76 16 4 C 0.10 3.27 2.77 30.65 0.08 3.35 16 5 H 0.08 2.27 7.79 -2.38 -0.02 2.25 16 6 C -0.13 -3.90 5.62 30.68 0.17 -3.73 16 7 C -0.10 -2.80 6.09 30.65 0.19 -2.61 16 8 C 0.05 2.06 5.12 86.33 0.44 2.50 16 9 N -0.51 -20.44 4.10 -875.53 -3.59 -24.03 16 10 C 0.18 8.58 1.36 44.17 0.06 8.65 16 11 H 0.04 1.80 7.14 -2.39 -0.02 1.79 16 12 C -0.54 -30.94 7.77 25.60 0.20 -30.75 16 13 H 0.03 1.94 6.08 -2.91 -0.02 1.92 16 14 C 0.01 0.79 5.45 84.65 0.46 1.25 16 15 N -0.95 -60.58 13.96 21.45 0.30 -60.29 16 16 Si 0.95 45.45 24.40 68.60 1.67 47.12 16 17 H -0.27 -12.30 6.84 99.48 0.68 -11.62 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.24 -10.53 6.53 99.48 0.65 -9.88 16 20 C -0.12 -5.27 4.67 30.59 0.14 -5.12 16 21 C -0.13 -4.33 9.71 71.98 0.70 -3.63 16 22 C 0.07 2.85 4.45 86.32 0.38 3.23 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 27 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.97 7.95 -2.39 -0.02 1.95 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.59 8.08 -2.38 -0.02 2.57 16 33 H 0.00 0.20 6.96 -2.39 -0.02 0.18 16 34 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 35 H 0.05 2.26 6.15 -2.38 -0.01 2.24 16 36 H 0.04 1.58 3.23 -2.39 -0.01 1.57 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 2.12 7.84 -2.39 -0.02 2.10 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.00 0.15 6.63 -2.39 -0.02 0.13 16 41 H 0.07 2.80 5.97 -2.39 -0.01 2.79 16 Total: -1.00 -67.48 306.01 1.83 -65.66 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.89 Total: 13.68 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.04 Total: -27.39 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -3.29 Total: -84.31 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.49 Total: -14.76 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -67.48 1.83 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220095797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.776 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds