Wall clock time and date at job start Sun Mar 29 2020 23:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 H 1.08998 * 109.47629 * 54.50292 * 3 2 1 5 5 C 1.50704 * 109.46771 * 174.50329 * 3 2 1 6 6 H 1.08000 * 120.00155 * 120.00182 * 5 3 2 7 7 C 1.37879 * 119.99904 * 299.99588 * 5 3 2 8 8 N 1.31515 * 119.99800 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46904 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46683 * 299.99654 * 9 7 5 12 12 H 1.48497 * 109.47474 * 59.99775 * 9 7 5 13 13 N 1.46899 * 109.47106 * 294.49825 * 3 2 1 14 14 C 1.46899 * 110.99790 * 154.42532 * 13 3 2 15 15 C 1.52998 * 109.47197 * 174.78963 * 14 13 3 16 16 C 1.52998 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.08997 * 109.47940 * 55.00227 * 16 15 14 18 18 C 1.53102 * 109.47826 * 175.02086 * 16 15 14 19 19 C 1.53181 * 109.16053 * 177.58725 * 18 16 15 20 20 C 1.53168 * 109.03965 * 303.02525 * 19 18 16 21 21 C 1.53093 * 109.16616 * 56.97672 * 20 19 18 22 22 O 1.42897 * 109.48016 * 294.97605 * 16 15 14 23 23 H 1.08999 * 109.47209 * 186.00926 * 1 2 3 24 24 H 1.09003 * 109.47058 * 306.00883 * 1 2 3 25 25 H 1.08994 * 109.47106 * 66.00755 * 1 2 3 26 26 H 1.08996 * 109.47049 * 240.00095 * 2 1 3 27 27 H 1.09000 * 109.46945 * 119.99594 * 2 1 3 28 28 H 0.97007 * 119.99339 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00014 * 30.47417 * 13 3 2 30 30 H 1.09001 * 109.46989 * 294.78999 * 14 13 3 31 31 H 1.08996 * 109.47229 * 54.79238 * 14 13 3 32 32 H 1.09009 * 109.47068 * 300.00285 * 15 14 13 33 33 H 1.09001 * 109.47287 * 59.99494 * 15 14 13 34 34 H 1.08997 * 109.52257 * 297.49644 * 18 16 15 35 35 H 1.09002 * 109.51885 * 57.62339 * 18 16 15 36 36 H 1.09007 * 109.53927 * 62.89240 * 19 18 16 37 37 H 1.08998 * 109.54286 * 183.14938 * 19 18 16 38 38 H 1.09005 * 109.52349 * 176.88503 * 20 19 18 39 39 H 1.09000 * 109.52243 * 297.01002 * 20 19 18 40 40 H 1.08995 * 109.47885 * 62.37523 * 21 20 19 41 41 H 1.09002 * 109.47963 * 182.39573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5985 1.9841 0.8366 5 6 3.5409 1.4447 0.1361 6 1 4.1525 1.8870 -0.6363 7 6 4.1331 0.8820 1.2468 8 7 3.3883 0.3430 2.1872 9 14 5.9935 0.8853 1.4159 10 1 6.3759 0.2244 2.6896 11 1 6.5953 0.1478 0.2760 12 1 6.4881 2.2855 1.4161 13 7 1.6617 2.0956 -1.2603 14 6 1.5682 3.5519 -1.0912 15 6 1.3011 4.2068 -2.4479 16 6 1.2044 5.7235 -2.2718 17 1 2.1062 6.0908 -1.7821 18 6 1.0614 6.3885 -3.6435 19 6 0.9046 7.9006 -3.4552 20 6 -0.3017 8.1690 -2.5503 21 6 -0.1061 7.4352 -1.2210 22 8 0.0644 6.0384 -1.4698 23 1 -0.3633 -1.0220 0.1076 24 1 -0.3633 0.6042 0.8313 25 1 -0.3633 0.4178 -0.9388 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8051 -0.0531 2.9684 29 1 0.7979 1.7170 -1.6187 30 1 0.7523 3.7866 -0.4075 31 1 2.5049 3.9311 -0.6828 32 1 2.1171 3.9720 -3.1316 33 1 0.3644 3.8275 -2.8564 34 1 1.9502 6.1860 -4.2409 35 1 0.1827 5.9907 -4.1513 36 1 1.8047 8.3057 -2.9926 37 1 0.7463 8.3742 -4.4240 38 1 -0.3877 9.2399 -2.3660 39 1 -1.2087 7.8091 -3.0360 40 1 0.7784 7.8251 -0.7174 41 1 -0.9811 7.5880 -0.5892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224001349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:29 Heat of formation + Delta-G solvation = -74.961209 kcal Electronic energy + Delta-G solvation = -17889.989349 eV Core-core repulsion = 15189.631961 eV Total energy + Delta-G solvation = -2700.357388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38294 -36.38329 -33.73285 -33.56706 -31.90218 -30.78058 -28.17025 -26.21196 -24.51258 -23.22033 -22.27101 -20.71554 -20.20547 -19.38741 -16.40927 -16.17394 -15.95827 -14.79060 -14.76176 -14.54855 -14.32745 -13.80896 -13.71720 -12.93728 -12.72034 -12.66640 -12.45370 -11.92578 -11.57465 -11.45382 -11.21205 -11.15847 -11.01557 -10.76786 -10.66560 -10.60323 -10.38801 -10.18991 -9.88805 -9.60387 -9.52470 -9.23840 -8.98813 -8.27649 -7.09814 -5.89929 -3.93773 3.37763 3.41646 3.45098 3.89458 4.49637 4.65778 4.71975 4.79656 4.92815 5.20069 5.26140 5.38648 5.43660 5.53535 5.59064 5.72068 5.77665 5.79436 5.91234 5.94557 6.07454 6.11822 6.21280 6.23890 6.26636 6.36721 6.49487 6.71608 6.83939 6.92564 7.17255 7.28059 7.38794 7.60163 7.85945 7.99157 8.41716 8.48796 8.87283 9.13920 9.70691 11.15451 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.005192 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.453526 B = 5391.955232 C = 5950.013383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.279 1.279 13 N -0.689 5.689 14 C 0.071 3.929 15 C -0.106 4.106 16 C 0.091 3.909 17 H 0.058 0.942 18 C -0.149 4.149 19 C -0.123 4.123 20 C -0.156 4.156 21 C 0.060 3.940 22 O -0.374 6.374 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.099 0.901 28 H 0.259 0.741 29 H 0.315 0.685 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 12.470 -8.804 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.215 1.215 11 H -0.203 1.203 12 H -0.205 1.205 13 N -0.320 5.320 14 C -0.059 4.059 15 C -0.144 4.144 16 C 0.033 3.967 17 H 0.076 0.924 18 C -0.187 4.187 19 C -0.160 4.160 20 C -0.194 4.194 21 C -0.018 4.018 22 O -0.294 6.294 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.006 12.245 -8.779 16.220 hybrid contribution 0.320 0.340 0.567 0.734 sum -5.685 12.585 -8.212 16.067 Atomic orbital electron populations 1.21876 0.99621 0.99607 0.99601 1.21762 0.91225 1.00425 1.02963 1.19140 0.95332 0.89930 0.84527 0.98145 1.21189 0.91352 1.36292 1.04172 0.92212 1.24963 0.98008 0.95757 0.95881 1.69873 1.34685 1.39567 1.09615 0.86619 0.85926 0.78061 0.77087 1.21489 1.20338 1.20506 1.60693 1.36027 1.02374 1.32931 1.21731 1.00189 0.89773 0.94203 1.21619 1.02135 0.91143 0.99518 1.22173 0.88434 0.96163 0.89913 0.92408 1.22214 1.02857 0.95323 0.98328 1.21592 0.98229 0.96432 0.99782 1.22190 0.99160 1.00562 0.97439 1.22515 1.01291 0.82285 0.95660 1.87991 1.47419 1.22733 1.71209 0.94462 0.93913 0.94580 0.94110 0.88329 0.93112 0.86826 0.96057 0.91276 0.90093 0.91985 0.90864 0.91184 0.91903 0.91780 0.91291 0.91230 0.93400 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.64 37.16 0.36 -2.66 16 2 C -0.13 -3.04 5.36 -26.73 -0.14 -3.19 16 3 C 0.22 5.62 2.02 -68.86 -0.14 5.48 16 4 H 0.00 0.03 7.85 -51.93 -0.41 -0.38 16 5 C -0.49 -13.88 8.57 -34.44 -0.30 -14.18 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -26.04 11.29 55.43 0.63 -25.42 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.69 -15.22 6.27 -107.95 -0.68 -15.90 16 14 C 0.07 1.41 5.35 -3.83 -0.02 1.39 16 15 C -0.11 -1.68 5.23 -26.73 -0.14 -1.82 16 16 C 0.09 1.27 2.64 -26.68 -0.07 1.20 16 17 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.15 -1.67 5.42 -26.59 -0.14 -1.82 16 19 C -0.12 -1.18 6.03 -26.55 -0.16 -1.34 16 20 C -0.16 -1.48 6.14 -26.60 -0.16 -1.64 16 21 C 0.06 0.68 6.84 37.21 0.25 0.93 16 22 O -0.37 -5.60 9.94 -35.23 -0.35 -5.95 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.65 6.66 -51.93 -0.35 0.31 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 29 H 0.31 6.41 6.64 -39.29 -0.26 6.15 16 30 H 0.02 0.44 7.82 -51.93 -0.41 0.04 16 31 H 0.07 1.50 7.94 -51.93 -0.41 1.09 16 32 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -29.44 319.84 -8.96 -38.40 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.60 Total: 3.43 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.76 Total: -16.19 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.05 Total: -41.32 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.35 Total: -5.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.44 -8.96 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224001349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.560 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds