Wall clock time and date at job start Sun Mar 29 2020 23:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 H 1.08998 * 109.47629 * 54.50292 * 3 2 1 5 5 C 1.50704 * 109.46771 * 174.50329 * 3 2 1 6 6 H 1.08000 * 120.00155 * 120.00182 * 5 3 2 7 7 C 1.37879 * 119.99904 * 299.99588 * 5 3 2 8 8 N 1.31515 * 119.99800 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46904 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46683 * 299.99654 * 9 7 5 12 12 H 1.48497 * 109.47474 * 59.99775 * 9 7 5 13 13 N 1.46899 * 109.47106 * 294.49825 * 3 2 1 14 14 C 1.46899 * 110.99790 * 154.42532 * 13 3 2 15 15 C 1.52998 * 109.47197 * 174.78963 * 14 13 3 16 16 C 1.52998 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.08997 * 109.47940 * 55.00227 * 16 15 14 18 18 C 1.53102 * 109.47826 * 175.02086 * 16 15 14 19 19 C 1.53181 * 109.16053 * 177.58725 * 18 16 15 20 20 C 1.53168 * 109.03965 * 303.02525 * 19 18 16 21 21 C 1.53093 * 109.16616 * 56.97672 * 20 19 18 22 22 O 1.42897 * 109.48016 * 294.97605 * 16 15 14 23 23 H 1.08999 * 109.47209 * 186.00926 * 1 2 3 24 24 H 1.09003 * 109.47058 * 306.00883 * 1 2 3 25 25 H 1.08994 * 109.47106 * 66.00755 * 1 2 3 26 26 H 1.08996 * 109.47049 * 240.00095 * 2 1 3 27 27 H 1.09000 * 109.46945 * 119.99594 * 2 1 3 28 28 H 0.97007 * 119.99339 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00014 * 30.47417 * 13 3 2 30 30 H 1.09001 * 109.46989 * 294.78999 * 14 13 3 31 31 H 1.08996 * 109.47229 * 54.79238 * 14 13 3 32 32 H 1.09009 * 109.47068 * 300.00285 * 15 14 13 33 33 H 1.09001 * 109.47287 * 59.99494 * 15 14 13 34 34 H 1.08997 * 109.52257 * 297.49644 * 18 16 15 35 35 H 1.09002 * 109.51885 * 57.62339 * 18 16 15 36 36 H 1.09007 * 109.53927 * 62.89240 * 19 18 16 37 37 H 1.08998 * 109.54286 * 183.14938 * 19 18 16 38 38 H 1.09005 * 109.52349 * 176.88503 * 20 19 18 39 39 H 1.09000 * 109.52243 * 297.01002 * 20 19 18 40 40 H 1.08995 * 109.47885 * 62.37523 * 21 20 19 41 41 H 1.09002 * 109.47963 * 182.39573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5985 1.9841 0.8366 5 6 3.5409 1.4447 0.1361 6 1 4.1525 1.8870 -0.6363 7 6 4.1331 0.8820 1.2468 8 7 3.3883 0.3430 2.1872 9 14 5.9935 0.8853 1.4159 10 1 6.3759 0.2244 2.6896 11 1 6.5953 0.1478 0.2760 12 1 6.4881 2.2855 1.4161 13 7 1.6617 2.0956 -1.2603 14 6 1.5682 3.5519 -1.0912 15 6 1.3011 4.2068 -2.4479 16 6 1.2044 5.7235 -2.2718 17 1 2.1062 6.0908 -1.7821 18 6 1.0614 6.3885 -3.6435 19 6 0.9046 7.9006 -3.4552 20 6 -0.3017 8.1690 -2.5503 21 6 -0.1061 7.4352 -1.2210 22 8 0.0644 6.0384 -1.4698 23 1 -0.3633 -1.0220 0.1076 24 1 -0.3633 0.6042 0.8313 25 1 -0.3633 0.4178 -0.9388 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8051 -0.0531 2.9684 29 1 0.7979 1.7170 -1.6187 30 1 0.7523 3.7866 -0.4075 31 1 2.5049 3.9311 -0.6828 32 1 2.1171 3.9720 -3.1316 33 1 0.3644 3.8275 -2.8564 34 1 1.9502 6.1860 -4.2409 35 1 0.1827 5.9907 -4.1513 36 1 1.8047 8.3057 -2.9926 37 1 0.7463 8.3742 -4.4240 38 1 -0.3877 9.2399 -2.3660 39 1 -1.2087 7.8091 -3.0360 40 1 0.7784 7.8251 -0.7174 41 1 -0.9811 7.5880 -0.5892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224001349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:28 Heat of formation + Delta-G solvation = -93.255295 kcal Electronic energy + Delta-G solvation = -17890.782640 eV Core-core repulsion = 15189.631961 eV Total energy + Delta-G solvation = -2701.150679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39376 -38.22785 -35.26178 -34.51496 -33.79366 -32.28628 -29.60832 -28.05052 -25.67018 -24.72513 -23.72569 -22.17161 -21.33916 -21.07853 -18.38647 -17.44389 -17.04033 -16.64238 -16.24523 -15.72712 -15.63503 -15.29528 -14.90574 -14.61865 -14.24826 -13.95371 -13.59805 -13.48708 -13.17608 -12.89356 -12.83741 -12.59220 -12.53829 -12.22630 -12.07937 -11.96261 -11.80336 -11.64827 -11.51861 -11.37064 -11.08672 -10.99958 -10.42716 -10.29762 -9.00212 -8.05938 -6.18502 1.41688 1.43751 1.51528 2.44494 2.89391 3.18492 3.50186 3.91834 3.97401 3.99566 4.04893 4.21911 4.38298 4.46469 4.49850 4.54329 4.56969 4.59349 4.69972 4.77022 4.86884 4.90841 4.97049 5.04589 5.08657 5.12655 5.16526 5.23533 5.24934 5.34208 5.37935 5.42909 5.60534 5.75236 5.89933 6.36072 6.38151 6.51059 6.94471 7.01871 7.50363 8.97430 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.005192 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.453526 B = 5391.955232 C = 5950.013383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.223 3.777 4 H -0.038 1.038 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.958 3.042 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.275 1.275 13 N -0.686 5.686 14 C 0.077 3.923 15 C -0.095 4.095 16 C 0.091 3.909 17 H 0.049 0.951 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.150 4.150 21 C 0.050 3.950 22 O -0.403 6.403 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.260 0.740 29 H 0.327 0.673 30 H 0.007 0.993 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 13.389 -10.277 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.114 3.886 4 H -0.020 1.020 5 C -0.552 4.552 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.200 1.200 13 N -0.318 5.318 14 C -0.052 4.052 15 C -0.133 4.133 16 C 0.033 3.967 17 H 0.067 0.933 18 C -0.182 4.182 19 C -0.160 4.160 20 C -0.188 4.188 21 C -0.027 4.027 22 O -0.323 6.323 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.137 13.176 -10.268 17.796 hybrid contribution 0.324 0.075 1.061 1.112 sum -5.813 13.250 -9.207 17.150 Atomic orbital electron populations 1.21748 0.96334 1.01133 1.00427 1.21590 0.94191 0.98834 1.01299 1.18949 0.94178 0.90736 0.84714 1.02022 1.21446 0.92714 1.36704 1.04352 0.93192 1.25726 1.02551 0.95260 0.95473 1.70011 1.36404 1.39819 1.09901 0.85613 0.80454 0.78225 0.77316 1.20814 1.19631 1.20015 1.60621 1.36820 1.03479 1.30860 1.21678 0.98297 0.88674 0.96585 1.21507 1.02628 0.92434 0.96682 1.22128 0.88052 0.94877 0.91630 0.93284 1.22161 1.03387 0.96348 0.96293 1.21620 0.98359 0.95168 1.00839 1.22156 0.99068 1.01519 0.96052 1.22753 1.01765 0.80879 0.97258 1.87938 1.47588 1.25030 1.71716 0.92196 0.94828 0.92346 0.94241 0.91373 0.93054 0.85481 0.97427 0.93827 0.89478 0.91207 0.89877 0.91064 0.91723 0.89862 0.89135 0.91288 0.93393 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 9.64 71.98 0.69 -4.79 16 2 C -0.12 -5.92 5.36 30.60 0.16 -5.76 16 3 C 0.22 11.78 2.02 44.17 0.09 11.87 16 4 H -0.04 -2.25 7.85 -2.39 -0.02 -2.27 16 5 C -0.51 -29.68 8.57 25.60 0.22 -29.46 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.45 5.29 84.66 0.45 0.90 16 8 N -0.92 -54.52 11.29 21.45 0.24 -54.28 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.69 -30.59 6.27 -495.45 -3.11 -33.69 16 14 C 0.08 3.16 5.35 86.30 0.46 3.62 16 15 C -0.09 -2.93 5.23 30.59 0.16 -2.77 16 16 C 0.09 2.48 2.64 30.63 0.08 2.56 16 17 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 18 C -0.14 -2.94 5.42 30.69 0.17 -2.77 16 19 C -0.12 -2.03 6.03 30.71 0.19 -1.85 16 20 C -0.15 -2.50 6.14 30.68 0.19 -2.31 16 21 C 0.05 1.08 6.84 72.01 0.49 1.58 16 22 O -0.40 -11.88 9.94 -148.98 -1.48 -13.36 16 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 2.02 6.66 -2.39 -0.02 2.00 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 3.78 5.94 -2.39 -0.01 3.77 16 28 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 29 H 0.33 13.09 6.64 -89.70 -0.60 12.50 16 30 H 0.01 0.33 7.82 -2.39 -0.02 0.31 16 31 H 0.04 1.97 7.94 -2.39 -0.02 1.95 16 32 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -64.17 319.84 1.40 -62.76 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.37 Total: 20.63 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 3.35 Total: -29.18 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.86 Total: -87.97 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.48 Total: -13.36 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.17 1.40 -62.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224001349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.493 kcal (2) G-P(sol) polarization free energy of solvation -64.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds