Wall clock time and date at job start Sun Mar 29 2020 23:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 H 1.08999 * 109.46369 * 177.44604 * 3 2 1 5 5 C 1.50693 * 109.47151 * 297.44518 * 3 2 1 6 6 H 1.07994 * 120.00264 * 120.00292 * 5 3 2 7 7 C 1.37882 * 119.99966 * 300.00109 * 5 3 2 8 8 N 1.31508 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47014 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47002 * 120.00187 * 9 7 5 12 12 H 1.48493 * 109.47481 * 240.00145 * 9 7 5 13 13 N 1.46901 * 109.47366 * 57.44894 * 3 2 1 14 14 C 1.46845 * 110.99769 * 54.36871 * 13 3 2 15 15 C 1.53046 * 109.52164 * 185.83838 * 14 13 3 16 16 C 1.53113 * 109.27723 * 300.82389 * 15 14 13 17 17 C 1.53124 * 109.16116 * 57.65476 * 16 15 14 18 18 H 1.08999 * 109.50604 * 62.28401 * 17 16 15 19 19 C 1.53000 * 109.50394 * 182.40283 * 17 16 15 20 20 C 1.53000 * 109.47160 * 294.80369 * 19 17 16 21 21 O 1.42900 * 109.47266 * 179.97438 * 20 19 17 22 22 C 1.46843 * 110.99783 * 178.58126 * 13 3 2 23 23 H 1.09001 * 109.46914 * 295.28680 * 1 2 3 24 24 H 1.09005 * 109.46677 * 55.27588 * 1 2 3 25 25 H 1.08992 * 109.47845 * 175.28104 * 1 2 3 26 26 H 1.09000 * 109.46636 * 120.00063 * 2 1 3 27 27 H 1.08997 * 109.46625 * 239.99722 * 2 1 3 28 28 H 0.97004 * 120.00401 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46805 * 305.85585 * 14 13 3 30 30 H 1.09008 * 109.46124 * 65.82981 * 14 13 3 31 31 H 1.08999 * 109.50130 * 180.88114 * 15 14 13 32 32 H 1.09000 * 109.50002 * 60.76322 * 15 14 13 33 33 H 1.08993 * 109.52705 * 297.74671 * 16 15 14 34 34 H 1.09001 * 109.52261 * 177.55671 * 16 15 14 35 35 H 1.09003 * 109.47186 * 54.79888 * 19 17 16 36 36 H 1.08997 * 109.47467 * 174.79894 * 19 17 16 37 37 H 1.09010 * 109.47049 * 299.99883 * 20 19 17 38 38 H 1.08997 * 109.47318 * 59.99434 * 20 19 17 39 39 H 0.96699 * 113.99985 * 179.97438 * 21 20 19 40 40 H 1.08995 * 109.46653 * 294.17298 * 22 13 3 41 41 H 1.08994 * 109.46140 * 54.14308 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4427 0.0458 5 6 1.5901 2.1343 -1.2608 6 1 0.9659 3.0136 -1.2010 7 6 1.9754 1.6448 -2.4909 8 7 2.7350 0.5738 -2.5639 9 14 1.4170 2.5021 -4.0539 10 1 0.5763 3.6745 -3.7021 11 1 2.6049 2.9573 -4.8201 12 1 0.6266 1.5562 -4.8820 13 7 1.5007 2.1526 1.1674 14 6 1.8070 1.4317 2.4095 15 6 1.1089 2.1192 3.5853 16 6 1.5916 3.5690 3.6822 17 6 1.3045 4.2839 2.3588 18 1 0.2292 4.3032 2.1814 19 6 1.8379 5.7163 2.4258 20 6 1.0583 6.5019 3.4823 21 8 1.5569 7.8396 3.5453 22 6 1.9970 3.5337 1.2187 23 1 -0.3633 0.4390 0.9292 24 1 -0.3633 0.5854 -0.8447 25 1 -0.3634 -1.0241 -0.0845 26 1 1.8933 -0.5139 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 3.0064 0.2296 -3.4292 29 1 1.4548 0.4033 2.3290 30 1 2.8844 1.4346 2.5749 31 1 1.3491 1.5931 4.5092 32 1 0.0305 2.1045 3.4272 33 1 2.6636 3.5837 3.8790 34 1 1.0649 4.0750 4.4912 35 1 2.8946 5.6985 2.6927 36 1 1.7166 6.1950 1.4541 37 1 0.0015 6.5197 3.2155 38 1 1.1796 6.0232 4.4539 39 1 1.1075 8.3966 4.1956 40 1 3.0734 3.5267 1.3897 41 1 1.7828 4.0319 0.2733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225999420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:22 Heat of formation + Delta-G solvation = -69.051657 kcal Electronic energy + Delta-G solvation = -18567.802662 eV Core-core repulsion = 15867.701532 eV Total energy + Delta-G solvation = -2700.101130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.86107 -36.98044 -35.10029 -32.67185 -31.36952 -30.59291 -27.81874 -26.47260 -24.03453 -23.37445 -21.96115 -21.08698 -19.35543 -18.68834 -17.31907 -16.03994 -15.49142 -15.31255 -14.54241 -14.27461 -13.89337 -13.51280 -13.37333 -13.01724 -12.84156 -12.52305 -11.94623 -11.79187 -11.55977 -11.24842 -11.22799 -10.92144 -10.75472 -10.59086 -10.41561 -10.32504 -10.10120 -9.97345 -9.88538 -9.73582 -9.50975 -9.23435 -8.74423 -8.36134 -7.07250 -5.97459 -4.00747 3.31284 3.39593 3.43769 4.18955 4.43833 4.96427 5.01359 5.16309 5.28702 5.34632 5.37182 5.44062 5.53996 5.77296 5.96363 5.98866 6.02128 6.15152 6.23164 6.25786 6.35842 6.39279 6.46956 6.58529 6.59816 6.67266 6.76183 6.85508 6.87760 7.14382 7.36294 7.45931 7.57441 7.69521 7.80116 7.87650 8.26706 8.39218 8.66349 9.05474 9.63306 11.08922 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.007206 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.114789 B = 3884.950061 C = 4826.348998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.005 1.005 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.528 5.528 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.082 4.082 18 H 0.076 0.924 19 C -0.114 4.114 20 C 0.076 3.924 21 O -0.578 6.578 22 C 0.073 3.927 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.374 0.626 40 H 0.017 0.983 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 6.259 11.893 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.253 5.253 14 C -0.079 4.079 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.101 4.101 18 H 0.094 0.906 19 C -0.152 4.152 20 C -0.002 4.002 21 O -0.383 6.383 22 C -0.056 4.056 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.220 0.780 40 H 0.035 0.965 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.396 5.913 11.219 13.129 hybrid contribution 0.294 0.486 -0.361 0.673 sum -3.102 6.399 10.857 12.979 Atomic orbital electron populations 1.21474 0.97302 0.97584 1.01464 1.21601 0.95120 0.98288 1.00147 1.19248 0.92303 0.90679 0.86675 0.98704 1.21104 1.30637 1.11798 0.89641 0.91951 1.24904 0.95259 0.95099 0.98934 1.69884 1.36370 1.22563 1.24461 0.86539 0.78380 0.79642 0.83464 1.19751 1.21244 1.21097 1.61995 1.59970 1.01157 1.02175 1.22092 0.96562 0.98521 0.90690 1.21576 1.01003 0.95207 0.97432 1.21671 1.00512 0.96072 0.96892 1.21169 1.01066 0.92362 0.95524 0.90577 1.21528 1.00029 0.94727 0.98885 1.22302 0.96971 0.82054 0.98857 1.86498 1.64184 1.23552 1.64030 1.21903 0.95161 0.90641 0.97877 0.94122 0.92215 0.96605 0.96781 0.88940 0.93125 0.90760 0.96586 0.92736 0.91560 0.92663 0.92794 0.91611 0.91097 0.93765 0.93675 0.77954 0.96489 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.41 37.16 0.35 -2.30 16 2 C -0.11 -2.70 4.95 -26.73 -0.13 -2.84 16 3 C 0.22 5.39 1.76 -68.87 -0.12 5.26 16 4 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 5 C -0.49 -13.19 6.64 -34.44 -0.23 -13.42 16 6 H 0.06 1.68 6.81 -52.49 -0.36 1.33 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.28 11.30 55.43 0.63 -24.66 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.53 -11.11 3.78 -228.08 -0.86 -11.97 16 14 C 0.05 0.91 4.83 -3.83 -0.02 0.89 16 15 C -0.11 -1.69 6.09 -26.65 -0.16 -1.85 16 16 C -0.11 -1.57 4.98 -26.61 -0.13 -1.71 16 17 C -0.08 -1.26 2.35 -90.54 -0.21 -1.48 16 18 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.11 -1.60 5.05 -26.73 -0.14 -1.73 16 20 C 0.08 0.89 6.81 37.16 0.25 1.14 16 21 O -0.58 -6.89 13.66 -35.23 -0.48 -7.37 16 22 C 0.07 1.41 4.55 -3.84 -0.02 1.39 16 23 H 0.04 0.84 7.18 -51.93 -0.37 0.46 16 24 H 0.06 1.42 7.15 -51.93 -0.37 1.05 16 25 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.01 0.30 6.36 -51.93 -0.33 -0.03 16 27 H 0.09 2.47 6.01 -51.93 -0.31 2.16 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.07 1.39 5.59 -51.93 -0.29 1.09 16 30 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.05 0.47 6.63 -51.93 -0.34 0.13 16 39 H 0.37 2.56 9.12 45.56 0.42 2.98 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 1.79 6.39 -51.93 -0.33 1.46 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -28.97 308.12 -8.17 -37.14 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.43 Total: 1.06 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.65 Total: -15.11 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.23 Total: -36.63 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.48 Total: -7.37 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.97 -8.17 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225999420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.912 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds