Wall clock time and date at job start Sun Mar 29 2020 23:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47070 * 2 1 4 4 H 1.09003 * 109.47152 * 304.20431 * 3 2 1 5 5 C 1.50699 * 109.46860 * 184.20009 * 3 2 1 6 6 H 1.07994 * 120.00541 * 271.33639 * 5 3 2 7 7 C 1.37879 * 119.99781 * 91.34335 * 5 3 2 8 8 N 1.31515 * 120.00103 * 184.60315 * 7 5 3 9 9 Si 1.86807 * 120.00099 * 4.60046 * 7 5 3 10 10 H 1.48504 * 109.46777 * 85.72206 * 9 7 5 11 11 H 1.48502 * 109.47093 * 205.72112 * 9 7 5 12 12 H 1.48500 * 109.46991 * 325.72228 * 9 7 5 13 13 N 1.46897 * 109.47286 * 64.20351 * 3 2 1 14 14 C 1.46844 * 111.00126 * 64.51171 * 13 3 2 15 15 C 1.53039 * 109.52333 * 185.84099 * 14 13 3 16 16 C 1.53118 * 109.27875 * 300.81621 * 15 14 13 17 17 C 1.53117 * 109.15731 * 57.65857 * 16 15 14 18 18 H 1.09007 * 109.50497 * 62.28369 * 17 16 15 19 19 C 1.53002 * 109.50742 * 182.40303 * 17 16 15 20 20 C 1.53001 * 109.47045 * 294.80578 * 19 17 16 21 21 O 1.42898 * 109.47303 * 179.97438 * 20 19 17 22 22 C 1.46854 * 111.00176 * 188.72326 * 13 3 2 23 23 H 1.09004 * 109.46835 * 300.00010 * 1 2 3 24 24 H 1.08997 * 109.47404 * 59.99788 * 1 2 3 25 25 H 1.08996 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46684 * 120.00130 * 2 1 3 27 27 H 1.08995 * 109.46828 * 239.99852 * 2 1 3 28 28 H 0.96996 * 120.00160 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46203 * 305.85695 * 14 13 3 30 30 H 1.09002 * 109.46318 * 65.82735 * 14 13 3 31 31 H 1.08998 * 109.50175 * 180.87855 * 15 14 13 32 32 H 1.08999 * 109.53552 * 60.78523 * 15 14 13 33 33 H 1.08993 * 109.52968 * 297.75343 * 16 15 14 34 34 H 1.09003 * 109.57456 * 177.58900 * 16 15 14 35 35 H 1.09001 * 109.46786 * 54.80054 * 19 17 16 36 36 H 1.08994 * 109.47215 * 174.80154 * 19 17 16 37 37 H 1.09001 * 109.46901 * 299.99406 * 20 19 17 38 38 H 1.09000 * 109.47215 * 59.99041 * 20 19 17 39 39 H 0.96702 * 114.00083 * 180.02562 * 21 20 19 40 40 H 1.08993 * 109.45995 * 294.17437 * 22 13 3 41 41 H 1.09001 * 109.45968 * 54.15400 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9776 -0.8499 5 6 3.5434 1.4437 -0.1041 6 1 4.1467 1.3995 0.7906 7 6 4.1487 1.5014 -1.3415 8 7 5.4572 1.4112 -1.4384 9 14 3.1102 1.7075 -2.8806 10 1 2.8527 3.1513 -3.1142 11 1 3.8340 1.1389 -4.0460 12 1 1.8185 0.9963 -2.7050 13 7 1.6350 2.1051 1.2469 14 6 2.2743 1.4752 2.4092 15 6 1.7200 2.0930 3.6950 16 6 1.9952 3.5992 3.6917 17 6 1.3600 4.2233 2.4461 18 1 0.2794 4.0833 2.4796 19 6 1.6810 5.7187 2.4036 20 6 1.0107 6.4181 3.5878 21 8 1.3110 7.8146 3.5484 22 6 1.9246 3.5439 1.1965 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 5.8830 1.4514 -2.3090 29 1 2.0674 0.4050 2.4019 30 1 3.3513 1.6371 2.3635 31 1 2.2060 1.6362 4.5571 32 1 0.6453 1.9194 3.7489 33 1 3.0711 3.7730 3.6778 34 1 1.5647 4.0511 4.5854 35 1 2.7602 5.8603 2.4614 36 1 1.3081 6.1440 1.4718 37 1 -0.0686 6.2764 3.5299 38 1 1.3835 5.9926 4.5195 39 1 0.9178 8.3220 4.2717 40 1 3.0031 3.6960 1.1564 41 1 1.4636 3.9762 0.3084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225999435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:24 Heat of formation + Delta-G solvation = -71.859340 kcal Electronic energy + Delta-G solvation = -18614.130184 eV Core-core repulsion = 15913.907304 eV Total energy + Delta-G solvation = -2700.222880 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.89429 -37.01015 -35.13339 -32.40503 -31.84250 -30.86664 -27.96607 -26.95062 -24.01777 -23.02299 -22.02544 -21.22075 -19.37993 -18.75844 -17.31907 -16.78712 -15.45580 -15.30014 -14.61698 -14.25490 -13.77203 -13.65366 -13.15831 -13.10595 -13.01066 -12.67963 -12.12273 -11.87166 -11.65700 -11.47682 -11.27447 -11.15823 -10.91030 -10.78599 -10.50739 -10.33806 -10.09031 -9.96773 -9.90360 -9.75949 -9.56699 -9.42092 -9.20485 -8.55451 -7.07406 -6.11336 -4.11931 3.26579 3.35565 3.38563 4.18873 4.39169 4.93550 5.00759 5.15837 5.23818 5.32868 5.37169 5.48694 5.55190 5.82741 5.95972 6.01055 6.04401 6.08617 6.13413 6.20015 6.28676 6.31354 6.33223 6.41568 6.50794 6.56322 6.70353 6.75807 6.79732 6.86299 6.98253 7.05760 7.21911 7.30332 7.57685 7.61643 8.15012 8.26263 8.48665 8.93639 9.53495 11.01490 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.007364 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.779344 B = 3801.233325 C = 4299.990630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.179 3.821 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.077 0.923 7 C 0.076 3.924 8 N -0.897 5.897 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.529 5.529 14 C 0.057 3.943 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.080 4.080 18 H 0.072 0.928 19 C -0.115 4.115 20 C 0.076 3.924 21 O -0.577 6.577 22 C 0.070 3.930 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.374 0.626 40 H 0.045 0.955 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 5.293 9.399 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.072 3.928 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.095 0.905 7 C -0.127 4.127 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.185 1.185 13 N -0.252 5.252 14 C -0.071 4.071 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.099 4.099 18 H 0.090 0.910 19 C -0.153 4.153 20 C -0.001 4.001 21 O -0.382 6.382 22 C -0.059 4.059 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.220 0.780 40 H 0.063 0.937 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.925 5.030 8.766 14.165 hybrid contribution 0.249 0.323 -0.571 0.701 sum -9.676 5.353 8.196 13.764 Atomic orbital electron populations 1.21755 0.97887 0.99093 1.01357 1.21753 0.93349 0.98988 1.00701 1.19685 0.94279 0.90836 0.87988 0.94409 1.21632 0.90602 1.51450 0.94453 0.90500 1.25025 0.94656 0.94123 0.98863 1.69923 1.08962 1.49955 1.24662 0.86964 0.81244 0.78919 0.83115 1.20232 1.21555 1.18497 1.62356 1.57474 1.01703 1.03699 1.21952 0.97427 0.98242 0.89492 1.21609 1.01006 0.95079 0.97663 1.21653 1.00593 0.95995 0.96877 1.21134 1.00518 0.92242 0.96002 0.90998 1.21536 1.01449 0.94675 0.97614 1.22296 0.98277 0.80709 0.98861 1.86504 1.77738 1.20310 1.53680 1.21821 0.99394 0.89256 0.95401 0.92229 0.94222 0.94997 0.92881 0.93056 0.92707 0.91493 0.93907 0.92672 0.92075 0.92245 0.92919 0.91257 0.91350 0.93919 0.93567 0.77962 0.93673 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.79 37.16 0.36 -2.22 16 2 C -0.11 -2.31 5.20 -26.73 -0.14 -2.45 16 3 C 0.18 4.12 1.30 -68.87 -0.09 4.03 16 4 H 0.04 0.91 5.38 -51.93 -0.28 0.63 16 5 C -0.54 -14.65 7.60 -34.44 -0.26 -14.91 16 6 H 0.08 2.27 6.15 -52.49 -0.32 1.95 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 9 Si 0.87 21.37 26.60 -169.99 -4.52 16.85 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.12 6.71 56.52 0.38 -5.74 16 13 N -0.53 -10.61 4.03 -228.08 -0.92 -11.53 16 14 C 0.06 1.08 4.78 -3.83 -0.02 1.06 16 15 C -0.12 -1.74 6.09 -26.65 -0.16 -1.90 16 16 C -0.11 -1.62 4.98 -26.61 -0.13 -1.75 16 17 C -0.08 -1.21 2.35 -90.54 -0.21 -1.42 16 18 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 19 C -0.11 -1.62 5.05 -26.73 -0.14 -1.75 16 20 C 0.08 0.89 6.81 37.16 0.25 1.14 16 21 O -0.58 -6.93 13.66 -35.23 -0.48 -7.41 16 22 C 0.07 1.34 4.46 -3.83 -0.02 1.32 16 23 H 0.06 1.04 7.73 -51.93 -0.40 0.64 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.10 6.20 -51.93 -0.32 0.78 16 27 H 0.05 1.14 7.66 -51.93 -0.40 0.75 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.07 1.27 6.08 -51.93 -0.32 0.95 16 30 H 0.04 0.92 6.26 -51.93 -0.33 0.60 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.49 6.63 -51.93 -0.34 0.15 16 39 H 0.37 2.57 9.12 45.56 0.42 2.99 16 40 H 0.04 0.99 7.56 -51.93 -0.39 0.60 16 41 H 0.06 1.16 8.03 -51.93 -0.42 0.74 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -30.06 308.14 -7.57 -37.62 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.41 Total: 2.94 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.65 Total: -16.80 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.15 Total: -37.84 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.48 Total: -7.41 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.52 Total: 16.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.06 -7.57 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225999435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.237 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds