Wall clock time and date at job start Sun Mar 29 2020 22:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.08990 * 109.47396 * 305.65754 * 3 2 1 5 5 C 1.50700 * 109.47192 * 185.65595 * 3 2 1 6 6 H 1.08002 * 119.99935 * 240.00155 * 5 3 2 7 7 C 1.37875 * 120.00062 * 60.00206 * 5 3 2 8 8 N 1.31515 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46764 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47420 * 119.99741 * 9 7 5 12 12 H 1.48500 * 109.47211 * 240.00368 * 9 7 5 13 13 N 1.46903 * 109.46858 * 65.65669 * 3 2 1 14 14 C 1.46899 * 110.99935 * 209.37167 * 13 3 2 15 15 H 1.08995 * 109.54644 * 32.08711 * 14 13 3 16 16 C 1.53184 * 109.54099 * 271.91399 * 14 13 3 17 17 C 1.53091 * 109.16167 * 297.11144 * 16 14 13 18 18 O 1.42896 * 109.41884 * 302.39359 * 17 16 14 19 19 C 1.42910 * 114.09719 * 61.15671 * 18 17 16 20 20 H 1.08997 * 109.47908 * 58.84324 * 19 18 17 21 21 C 1.53004 * 109.47709 * 178.86121 * 19 18 17 22 22 C 1.53001 * 109.47369 * 294.99769 * 21 19 18 23 23 C 1.53090 * 109.41458 * 298.84511 * 19 18 17 24 24 H 1.08998 * 109.46913 * 294.17123 * 1 2 3 25 25 H 1.09004 * 109.47356 * 54.17056 * 1 2 3 26 26 H 1.08997 * 109.47693 * 174.17366 * 1 2 3 27 27 H 1.09002 * 109.47275 * 120.00501 * 2 1 3 28 28 H 1.09003 * 109.46689 * 239.99967 * 2 1 3 29 29 H 0.96999 * 120.00639 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99845 * 333.32442 * 13 3 2 31 31 H 1.08994 * 109.52747 * 57.02006 * 16 14 13 32 32 H 1.09001 * 109.51864 * 177.20927 * 16 14 13 33 33 H 1.09000 * 109.47961 * 62.37673 * 17 16 14 34 34 H 1.09001 * 109.48221 * 182.41034 * 17 16 14 35 35 H 1.08996 * 109.47338 * 55.00450 * 21 19 18 36 36 H 1.09008 * 109.46526 * 175.00025 * 21 19 18 37 37 H 1.08994 * 109.47146 * 180.02562 * 22 21 19 38 38 H 1.08997 * 109.46989 * 300.00888 * 22 21 19 39 39 H 1.08998 * 109.46657 * 60.00310 * 22 21 19 40 40 H 1.09003 * 109.52319 * 297.69839 * 23 19 18 41 41 H 1.08999 * 109.51859 * 177.51872 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9847 -0.8349 5 6 3.5405 1.4447 -0.1400 6 1 4.1541 1.8863 0.6312 7 6 4.1299 0.8831 -1.2527 8 7 3.3827 0.3449 -2.1917 9 14 5.9898 0.8852 -1.4260 10 1 6.5964 1.5447 -0.2419 11 1 6.4800 -0.5135 -1.5182 12 1 6.3716 1.6256 -2.6554 13 7 1.6650 2.0944 1.2619 14 6 1.4832 3.5399 1.0739 15 1 1.1076 3.7326 0.0691 16 6 2.8249 4.2541 1.2650 17 6 3.3072 4.0413 2.7023 18 8 2.3182 4.5273 3.6121 19 6 1.0566 3.8636 3.5117 20 1 1.1906 2.7980 3.6974 21 6 0.0908 4.4444 4.5466 22 6 0.6022 4.1304 5.9540 23 6 0.4838 4.0693 2.1069 24 1 -0.3633 0.4208 0.9376 25 1 -0.3634 0.6016 -0.8332 26 1 -0.3634 -1.0223 -0.1043 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 3.7972 -0.0499 -2.9747 30 1 0.8358 1.6736 1.6538 31 1 3.5580 3.8443 0.5704 32 1 2.6998 5.3205 1.0769 33 1 3.4707 2.9780 2.8771 34 1 4.2404 4.5830 2.8565 35 1 0.0251 5.5245 4.4163 36 1 -0.8960 4.0014 4.4113 37 1 -0.0861 4.5438 6.6912 38 1 0.6679 3.0503 6.0842 39 1 1.5889 4.5733 6.0892 40 1 0.3115 5.1319 1.9358 41 1 -0.4573 3.5273 2.0144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226595499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:14 Heat of formation + Delta-G solvation = -69.620679 kcal Electronic energy + Delta-G solvation = -18779.567061 eV Core-core repulsion = 16079.441256 eV Total energy + Delta-G solvation = -2700.125805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25290 -36.19647 -33.68880 -33.29232 -31.66411 -29.45317 -29.11858 -26.36698 -24.24859 -23.15695 -22.71914 -21.00486 -19.62584 -18.83350 -16.34784 -15.95959 -15.63703 -14.78532 -14.77436 -14.13194 -13.95523 -13.48745 -13.19692 -12.96880 -12.83928 -12.63550 -12.20336 -11.66016 -11.61655 -11.31969 -11.22205 -11.11182 -10.90154 -10.82816 -10.65770 -10.55973 -10.18489 -9.88249 -9.84589 -9.63255 -9.44570 -9.08647 -8.80791 -8.33408 -7.22684 -5.96848 -4.00105 3.30439 3.38995 3.43144 4.24545 4.44136 4.93731 5.14685 5.24343 5.33404 5.39529 5.47847 5.52500 5.75229 5.77308 5.83102 5.98100 6.02772 6.09632 6.12862 6.15756 6.17827 6.25024 6.33453 6.39182 6.45851 6.56492 6.63894 6.76446 6.84526 6.92267 7.07119 7.18747 7.48743 7.77349 7.79640 7.93274 8.32184 8.41025 8.75358 9.07472 9.64487 11.08566 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.007311 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.118356 B = 3828.796737 C = 4493.156612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.487 4.487 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.680 5.680 14 C 0.095 3.905 15 H 0.038 0.962 16 C -0.141 4.141 17 C 0.072 3.928 18 O -0.389 6.389 19 C 0.100 3.900 20 H 0.065 0.935 21 C -0.117 4.117 22 C -0.148 4.148 23 C -0.152 4.152 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.258 0.742 30 H 0.317 0.683 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 5.674 9.246 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.313 5.313 14 C -0.016 4.016 15 H 0.056 0.944 16 C -0.180 4.180 17 C -0.004 4.004 18 O -0.309 6.309 19 C 0.042 3.958 20 H 0.083 0.917 21 C -0.154 4.154 22 C -0.205 4.205 23 C -0.190 4.190 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.101 5.791 9.416 12.174 hybrid contribution 0.069 -0.271 -1.072 1.108 sum -5.032 5.520 8.344 11.199 Atomic orbital electron populations 1.21874 0.99677 0.99665 0.99443 1.21805 0.91165 1.00624 1.03040 1.19256 0.95568 0.89821 0.84239 0.97932 1.21280 0.91237 1.35997 1.04068 0.91763 1.24971 0.97907 0.95768 0.96014 1.69879 1.34525 1.39688 1.09594 0.86550 0.86048 0.77600 0.77865 1.19752 1.21211 1.21309 1.60779 1.38469 1.00822 1.31191 1.21405 0.94036 0.90222 0.95904 0.94367 1.22174 0.99037 0.98410 0.98347 1.22433 0.89609 0.99979 0.88372 1.87772 1.21333 1.62010 1.59793 1.21938 0.84156 0.96549 0.93174 0.91697 1.21571 0.97729 1.01422 0.94728 1.21696 1.01513 1.01400 0.95881 1.22440 0.98658 1.01393 0.96545 0.94741 0.93943 0.94438 0.94140 0.88265 0.93208 0.86517 0.88767 0.93172 0.91438 0.90569 0.91702 0.91235 0.93363 0.92934 0.91994 0.91579 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.66 37.16 0.36 -2.47 16 2 C -0.13 -2.94 5.33 -26.73 -0.14 -3.08 16 3 C 0.22 5.23 2.03 -68.86 -0.14 5.09 16 4 H 0.00 0.08 7.31 -51.93 -0.38 -0.30 16 5 C -0.49 -12.85 7.49 -34.44 -0.26 -13.11 16 6 H 0.06 1.71 6.95 -52.49 -0.36 1.35 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.68 -13.69 4.97 -100.77 -0.50 -14.19 16 14 C 0.09 1.75 2.86 -67.53 -0.19 1.56 16 15 H 0.04 0.77 7.33 -51.93 -0.38 0.39 16 16 C -0.14 -2.61 5.55 -26.59 -0.15 -2.75 16 17 C 0.07 1.26 6.68 37.20 0.25 1.51 16 18 O -0.39 -6.54 9.94 -35.23 -0.35 -6.89 16 19 C 0.10 1.49 2.48 -26.68 -0.07 1.42 16 20 H 0.07 1.04 7.66 -51.93 -0.40 0.65 16 21 C -0.12 -1.43 5.64 -26.73 -0.15 -1.58 16 22 C -0.15 -1.69 9.81 37.16 0.36 -1.32 16 23 C -0.15 -2.31 4.78 -26.60 -0.13 -2.44 16 24 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.32 5.93 6.03 -39.29 -0.24 5.69 16 31 H 0.09 1.98 6.07 -51.93 -0.32 1.67 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -27.12 312.00 -8.21 -35.33 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.32 Total: 5.24 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.35 Total: -15.81 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.13 Total: -38.70 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.35 Total: -6.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.12 -8.21 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.286 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds