Wall clock time and date at job start Sun Mar 29 2020 22:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.08990 * 109.47396 * 305.65754 * 3 2 1 5 5 C 1.50700 * 109.47192 * 185.65595 * 3 2 1 6 6 H 1.08002 * 119.99935 * 240.00155 * 5 3 2 7 7 C 1.37875 * 120.00062 * 60.00206 * 5 3 2 8 8 N 1.31515 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46764 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47420 * 119.99741 * 9 7 5 12 12 H 1.48500 * 109.47211 * 240.00368 * 9 7 5 13 13 N 1.46903 * 109.46858 * 65.65669 * 3 2 1 14 14 C 1.46899 * 110.99935 * 209.37167 * 13 3 2 15 15 H 1.08995 * 109.54644 * 32.08711 * 14 13 3 16 16 C 1.53184 * 109.54099 * 271.91399 * 14 13 3 17 17 C 1.53091 * 109.16167 * 297.11144 * 16 14 13 18 18 O 1.42896 * 109.41884 * 302.39359 * 17 16 14 19 19 C 1.42910 * 114.09719 * 61.15671 * 18 17 16 20 20 H 1.08997 * 109.47908 * 58.84324 * 19 18 17 21 21 C 1.53004 * 109.47709 * 178.86121 * 19 18 17 22 22 C 1.53001 * 109.47369 * 294.99769 * 21 19 18 23 23 C 1.53090 * 109.41458 * 298.84511 * 19 18 17 24 24 H 1.08998 * 109.46913 * 294.17123 * 1 2 3 25 25 H 1.09004 * 109.47356 * 54.17056 * 1 2 3 26 26 H 1.08997 * 109.47693 * 174.17366 * 1 2 3 27 27 H 1.09002 * 109.47275 * 120.00501 * 2 1 3 28 28 H 1.09003 * 109.46689 * 239.99967 * 2 1 3 29 29 H 0.96999 * 120.00639 * 179.97438 * 8 7 5 30 30 H 1.00900 * 110.99845 * 333.32442 * 13 3 2 31 31 H 1.08994 * 109.52747 * 57.02006 * 16 14 13 32 32 H 1.09001 * 109.51864 * 177.20927 * 16 14 13 33 33 H 1.09000 * 109.47961 * 62.37673 * 17 16 14 34 34 H 1.09001 * 109.48221 * 182.41034 * 17 16 14 35 35 H 1.08996 * 109.47338 * 55.00450 * 21 19 18 36 36 H 1.09008 * 109.46526 * 175.00025 * 21 19 18 37 37 H 1.08994 * 109.47146 * 180.02562 * 22 21 19 38 38 H 1.08997 * 109.46989 * 300.00888 * 22 21 19 39 39 H 1.08998 * 109.46657 * 60.00310 * 22 21 19 40 40 H 1.09003 * 109.52319 * 297.69839 * 23 19 18 41 41 H 1.08999 * 109.51859 * 177.51872 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9847 -0.8349 5 6 3.5405 1.4447 -0.1400 6 1 4.1541 1.8863 0.6312 7 6 4.1299 0.8831 -1.2527 8 7 3.3827 0.3449 -2.1917 9 14 5.9898 0.8852 -1.4260 10 1 6.5964 1.5447 -0.2419 11 1 6.4800 -0.5135 -1.5182 12 1 6.3716 1.6256 -2.6554 13 7 1.6650 2.0944 1.2619 14 6 1.4832 3.5399 1.0739 15 1 1.1076 3.7326 0.0691 16 6 2.8249 4.2541 1.2650 17 6 3.3072 4.0413 2.7023 18 8 2.3182 4.5273 3.6121 19 6 1.0566 3.8636 3.5117 20 1 1.1906 2.7980 3.6974 21 6 0.0908 4.4444 4.5466 22 6 0.6022 4.1304 5.9540 23 6 0.4838 4.0693 2.1069 24 1 -0.3633 0.4208 0.9376 25 1 -0.3634 0.6016 -0.8332 26 1 -0.3634 -1.0223 -0.1043 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 3.7972 -0.0499 -2.9747 30 1 0.8358 1.6736 1.6538 31 1 3.5580 3.8443 0.5704 32 1 2.6998 5.3205 1.0769 33 1 3.4707 2.9780 2.8771 34 1 4.2404 4.5830 2.8565 35 1 0.0251 5.5245 4.4163 36 1 -0.8960 4.0014 4.4113 37 1 -0.0861 4.5438 6.6912 38 1 0.6679 3.0503 6.0842 39 1 1.5889 4.5733 6.0892 40 1 0.3115 5.1319 1.9358 41 1 -0.4573 3.5273 2.0144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226595499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:13 Heat of formation + Delta-G solvation = -85.435918 kcal Electronic energy + Delta-G solvation = -18780.252861 eV Core-core repulsion = 16079.441256 eV Total energy + Delta-G solvation = -2700.811605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63036 -37.87413 -35.00287 -34.78021 -33.55486 -30.76823 -30.64017 -28.23974 -25.59219 -24.53865 -24.47386 -22.10803 -21.44509 -20.33384 -18.37287 -17.21183 -17.00838 -16.65745 -16.31628 -15.72261 -15.45739 -14.79334 -14.56569 -14.43901 -14.31801 -13.97181 -13.71076 -13.32694 -13.09549 -12.88229 -12.69578 -12.61048 -12.52973 -12.35653 -12.00755 -11.85832 -11.75084 -11.56480 -11.49634 -11.36248 -10.96181 -10.88250 -10.40871 -10.22429 -8.96181 -8.03787 -6.13363 1.39471 1.42756 1.53145 2.44941 3.00150 3.21688 3.60028 3.82112 4.04303 4.12850 4.28009 4.37078 4.43295 4.51080 4.56133 4.56942 4.66836 4.71401 4.75110 4.78726 5.00393 5.06525 5.08868 5.11238 5.16145 5.18999 5.25087 5.27164 5.35095 5.39896 5.45122 5.53128 5.62297 5.79278 5.93925 6.40190 6.47793 6.56427 6.99946 7.02759 7.54800 8.99733 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.007311 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.118356 B = 3828.796737 C = 4493.156612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.227 3.773 4 H -0.033 1.033 5 C -0.495 4.495 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.674 5.674 14 C 0.091 3.909 15 H 0.018 0.982 16 C -0.139 4.139 17 C 0.081 3.919 18 O -0.392 6.392 19 C 0.096 3.904 20 H 0.054 0.946 21 C -0.112 4.112 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.257 0.743 30 H 0.327 0.673 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 6.322 10.840 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.118 3.882 4 H -0.015 1.015 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.307 5.307 14 C -0.019 4.019 15 H 0.036 0.964 16 C -0.177 4.177 17 C 0.004 3.996 18 O -0.312 6.312 19 C 0.038 3.962 20 H 0.072 0.928 21 C -0.149 4.149 22 C -0.204 4.204 23 C -0.180 4.180 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.146 0.854 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.029 6.446 11.030 14.127 hybrid contribution 0.333 -0.446 -1.553 1.649 sum -5.697 6.000 9.477 12.581 Atomic orbital electron populations 1.21737 0.96377 1.00993 1.00430 1.21633 0.94149 0.99295 1.01166 1.19006 0.94216 0.90365 0.84585 1.01534 1.21534 0.92675 1.35382 1.03779 0.92515 1.25650 1.01714 0.95753 0.95941 1.70009 1.35932 1.40487 1.09973 0.85648 0.81563 0.77502 0.77777 1.19256 1.20974 1.21164 1.60651 1.39188 1.01822 1.29011 1.21453 0.95123 0.89181 0.96166 0.96430 1.22108 0.98237 0.99010 0.98394 1.22286 0.90585 0.98966 0.87754 1.87785 1.21938 1.62103 1.59374 1.22113 0.83961 0.96175 0.93926 0.92839 1.21579 0.97729 1.01649 0.93985 1.21682 1.01249 1.01378 0.96047 1.22376 0.98184 1.02120 0.95350 0.92277 0.94715 0.92588 0.94464 0.91569 0.93350 0.85378 0.91953 0.91728 0.93540 0.89109 0.91269 0.89150 0.91318 0.93032 0.93425 0.90399 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.66 71.98 0.70 -4.37 16 2 C -0.12 -5.73 5.33 30.59 0.16 -5.57 16 3 C 0.23 11.07 2.03 44.17 0.09 11.16 16 4 H -0.03 -1.82 7.31 -2.39 -0.02 -1.84 16 5 C -0.49 -26.73 7.49 25.60 0.19 -26.54 16 6 H 0.06 3.09 6.95 -2.91 -0.02 3.07 16 7 C 0.01 0.38 5.29 84.65 0.45 0.82 16 8 N -0.92 -53.05 11.29 21.45 0.24 -52.81 16 9 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 13 N -0.67 -27.03 4.97 -472.72 -2.35 -29.38 16 14 C 0.09 3.33 2.86 45.03 0.13 3.46 16 15 H 0.02 0.72 7.33 -2.39 -0.02 0.70 16 16 C -0.14 -5.11 5.55 30.69 0.17 -4.94 16 17 C 0.08 2.75 6.68 72.01 0.48 3.23 16 18 O -0.39 -12.50 9.94 -148.98 -1.48 -13.98 16 19 C 0.10 2.65 2.48 30.63 0.08 2.73 16 20 H 0.05 1.62 7.66 -2.39 -0.02 1.60 16 21 C -0.11 -2.36 5.64 30.60 0.17 -2.19 16 22 C -0.15 -2.94 9.81 71.98 0.71 -2.23 16 23 C -0.14 -3.99 4.78 30.68 0.15 -3.85 16 24 H 0.06 1.86 6.67 -2.39 -0.02 1.84 16 25 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 28 H 0.07 3.54 5.94 -2.39 -0.01 3.52 16 29 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.33 11.81 6.03 -89.69 -0.54 11.27 16 31 H 0.06 2.69 6.07 -2.39 -0.01 2.67 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 34 H 0.09 2.79 8.14 -2.39 -0.02 2.78 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.05 1.09 7.82 -2.39 -0.02 1.07 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 Total: -1.00 -59.03 312.00 2.35 -56.68 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.44 Total: 21.66 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.47 Total: -28.28 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.11 Total: -82.19 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -1.48 Total: -13.98 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -59.03 2.35 -56.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.753 kcal (2) G-P(sol) polarization free energy of solvation -59.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds