Wall clock time and date at job start Sun Mar 29 2020 22:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 H 1.09001 * 109.47446 * 305.11547 * 3 2 1 5 5 C 1.50700 * 109.47109 * 185.11362 * 3 2 1 6 6 H 1.07997 * 120.00446 * 244.40929 * 5 3 2 7 7 C 1.37883 * 119.99459 * 64.40915 * 5 3 2 8 8 N 1.31506 * 120.00160 * 6.92170 * 7 5 3 9 9 Si 1.86801 * 119.99542 * 186.91767 * 7 5 3 10 10 H 1.48499 * 109.47092 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47290 * 59.99947 * 9 7 5 12 12 H 1.48503 * 109.47095 * 299.99967 * 9 7 5 13 13 N 1.46905 * 109.47179 * 65.11751 * 3 2 1 14 14 C 1.46900 * 111.00026 * 200.90227 * 13 3 2 15 15 H 1.08996 * 109.54209 * 328.96304 * 14 13 3 16 16 C 1.53176 * 109.53951 * 89.13557 * 14 13 3 17 17 C 1.53111 * 109.15295 * 176.75963 * 16 14 13 18 18 O 1.42905 * 109.48577 * 302.52151 * 17 16 14 19 19 C 1.42906 * 114.09551 * 61.11431 * 18 17 16 20 20 H 1.09006 * 109.48975 * 58.82799 * 19 18 17 21 21 C 1.52998 * 109.47977 * 178.85479 * 19 18 17 22 22 C 1.52995 * 109.47555 * 294.94472 * 21 19 18 23 23 C 1.53091 * 109.41528 * 298.84060 * 19 18 17 24 24 H 1.09007 * 109.46606 * 304.93003 * 1 2 3 25 25 H 1.08992 * 109.46982 * 64.92723 * 1 2 3 26 26 H 1.08994 * 109.47068 * 184.93275 * 1 2 3 27 27 H 1.08994 * 109.47123 * 240.00296 * 2 1 3 28 28 H 1.08996 * 109.47436 * 119.99770 * 2 1 3 29 29 H 0.97001 * 120.00294 * 355.49738 * 8 7 5 30 30 H 1.00900 * 110.99930 * 76.94539 * 13 3 2 31 31 H 1.08996 * 109.52649 * 296.75094 * 16 14 13 32 32 H 1.08999 * 109.52469 * 56.94521 * 16 14 13 33 33 H 1.09006 * 109.47975 * 182.49931 * 17 16 14 34 34 H 1.08996 * 109.41504 * 62.51237 * 17 16 14 35 35 H 1.08997 * 109.46856 * 54.94310 * 21 19 18 36 36 H 1.09005 * 109.46999 * 174.93932 * 21 19 18 37 37 H 1.09004 * 109.46673 * 300.00133 * 22 21 19 38 38 H 1.09005 * 109.47408 * 59.99710 * 22 21 19 39 39 H 1.08994 * 109.47571 * 180.02562 * 22 21 19 40 40 H 1.09002 * 109.52486 * 297.70287 * 23 19 18 41 41 H 1.09003 * 109.52243 * 177.51135 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6038 1.9822 -0.8406 5 6 3.5417 1.4445 -0.1266 6 1 4.1512 1.8239 0.6801 7 6 4.1374 0.9618 -1.2726 8 7 3.3979 0.6269 -2.3072 9 14 5.9951 0.7836 -1.3555 10 1 6.3821 0.2481 -2.6854 11 1 6.4507 -0.1494 -0.2939 12 1 6.6292 2.1111 -1.1533 13 7 1.6538 2.0985 1.2565 14 6 1.6689 3.5604 1.1134 15 1 2.4315 3.8481 0.3897 16 6 0.2972 4.0422 0.6312 17 6 0.2975 5.5718 0.5627 18 8 0.6229 6.1063 1.8475 19 6 1.9149 5.7276 2.3268 20 1 2.6763 6.0595 1.6209 21 6 2.1643 6.3775 3.6892 22 6 2.2242 7.8976 3.5260 23 6 1.9789 4.2046 2.4681 24 1 -0.3633 0.5885 0.8426 25 1 -0.3633 0.4355 -0.9308 26 1 -0.3633 -1.0238 0.0884 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.4305 0.6574 -2.2421 30 1 2.2486 1.8033 2.0162 31 1 0.0941 3.6321 -0.3581 32 1 -0.4715 3.7102 1.3290 33 1 -0.6900 5.9224 0.2627 34 1 1.0375 5.9017 -0.1664 35 1 1.3538 6.1169 4.3698 36 1 3.1098 6.0182 4.0956 37 1 3.0347 8.1582 2.8453 38 1 1.2787 8.2570 3.1196 39 1 2.4023 8.3605 4.4965 40 1 1.2452 3.8759 3.2042 41 1 2.9775 3.9104 2.7913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226595506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:16 Heat of formation + Delta-G solvation = -79.484836 kcal Electronic energy + Delta-G solvation = -18485.535390 eV Core-core repulsion = 15784.981843 eV Total energy + Delta-G solvation = -2700.553547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35880 -36.49235 -33.89170 -33.60642 -31.49632 -29.86014 -29.41648 -25.84433 -23.99166 -23.31367 -22.79987 -20.93184 -19.74674 -19.57817 -17.08587 -16.21091 -15.79722 -14.87066 -14.55896 -14.09960 -13.79507 -13.76716 -13.56155 -13.13965 -13.03341 -12.70938 -12.19057 -11.90158 -11.61049 -11.49479 -11.33258 -11.08794 -10.95076 -10.77685 -10.71769 -10.48212 -10.26491 -10.18564 -10.05695 -9.74644 -9.67179 -9.16774 -8.93732 -8.33429 -7.30097 -6.35036 -4.14246 3.38121 3.39940 3.58348 3.95749 4.47921 4.75428 5.01500 5.10987 5.22970 5.30524 5.34098 5.41065 5.50952 5.54907 5.66899 5.81767 5.90819 5.93646 6.01885 6.10706 6.16019 6.19431 6.21918 6.26120 6.31329 6.42271 6.46129 6.54857 6.80073 6.85398 6.92012 7.16515 7.33400 7.45688 7.51527 7.94984 8.06756 8.43232 8.59087 8.79418 9.59494 10.96789 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.006861 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.577363 B = 4080.049866 C = 4813.332977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.627 4.627 6 H 0.046 0.954 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 1.062 2.938 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.679 5.679 14 C 0.093 3.907 15 H 0.051 0.949 16 C -0.139 4.139 17 C 0.063 3.937 18 O -0.382 6.382 19 C 0.093 3.907 20 H 0.055 0.945 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.149 4.149 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.273 0.727 30 H 0.329 0.671 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 9.037 8.378 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.666 4.666 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.544 5.544 9 Si 0.890 3.110 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.308 5.308 14 C -0.018 4.018 15 H 0.069 0.931 16 C -0.177 4.177 17 C -0.014 4.014 18 O -0.301 6.301 19 C 0.035 3.965 20 H 0.073 0.927 21 C -0.152 4.152 22 C -0.206 4.206 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.279 8.667 7.334 11.817 hybrid contribution -0.011 0.261 0.756 0.800 sum -3.290 8.928 8.090 12.489 Atomic orbital electron populations 1.21725 0.98214 0.99032 1.00838 1.21579 0.92992 0.99527 1.00826 1.19271 0.93631 0.90502 0.87195 0.95718 1.22615 0.92371 1.46311 1.05293 0.93575 1.25691 1.06692 0.93539 0.92042 1.70794 1.07800 1.45692 1.30076 0.83646 0.74736 0.76442 0.76135 1.20727 1.21447 1.21679 1.60843 1.57733 1.03750 1.08431 1.21318 0.95575 0.89863 0.95056 0.93114 1.22178 0.98778 0.94532 1.02249 1.22572 1.00370 0.93742 0.84720 1.87840 1.34529 1.72743 1.35021 1.22095 0.85352 0.93574 0.95459 0.92706 1.21535 1.02008 0.95877 0.95803 1.21715 1.02233 0.95565 1.01090 1.22412 1.02127 0.95220 0.98933 0.92466 0.94459 0.95205 0.91880 0.94004 0.91503 0.85450 0.91322 0.91204 0.89322 0.93609 0.91264 0.90830 0.93030 0.92017 0.93066 0.90944 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.86 37.16 0.37 -2.42 16 2 C -0.11 -2.56 5.27 -26.73 -0.14 -2.70 16 3 C 0.20 4.90 1.44 -68.86 -0.10 4.80 16 4 H 0.02 0.66 7.00 -51.93 -0.36 0.30 16 5 C -0.63 -16.89 8.03 -34.44 -0.28 -17.17 16 6 H 0.05 1.25 7.78 -52.49 -0.41 0.84 16 7 C 0.03 0.72 5.20 -17.82 -0.09 0.63 16 8 N -0.91 -26.62 13.04 55.43 0.72 -25.90 16 9 Si 1.06 24.80 29.91 -169.99 -5.08 19.72 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -14.01 5.44 -100.76 -0.55 -14.56 16 14 C 0.09 1.73 2.36 -67.53 -0.16 1.57 16 15 H 0.05 1.11 7.45 -51.93 -0.39 0.72 16 16 C -0.14 -2.35 5.68 -26.58 -0.15 -2.50 16 17 C 0.06 0.93 6.84 37.21 0.25 1.19 16 18 O -0.38 -5.84 9.95 -35.23 -0.35 -6.19 16 19 C 0.09 1.34 2.64 -26.68 -0.07 1.27 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.11 -1.36 5.64 -26.73 -0.15 -1.51 16 22 C -0.15 -1.59 9.81 37.15 0.36 -1.23 16 23 C -0.15 -2.34 4.65 -26.59 -0.12 -2.46 16 24 H 0.06 1.11 7.63 -51.93 -0.40 0.71 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.61 6.08 -51.93 -0.32 1.29 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.27 7.97 5.82 -40.82 -0.24 7.73 16 30 H 0.33 6.78 8.08 -39.29 -0.32 6.46 16 31 H 0.07 1.24 7.74 -51.93 -0.40 0.84 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.70 7.83 -51.93 -0.41 0.30 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -28.34 318.34 -8.27 -36.61 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.53 Total: 6.06 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -0.28 Total: -20.53 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.18 Total: -40.46 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.35 Total: -6.19 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.34 -8.27 -36.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.876 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds