Wall clock time and date at job start Sun Mar 29 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 H 1.09001 * 109.47446 * 305.11547 * 3 2 1 5 5 C 1.50700 * 109.47109 * 185.11362 * 3 2 1 6 6 H 1.07997 * 120.00446 * 244.40929 * 5 3 2 7 7 C 1.37883 * 119.99459 * 64.40915 * 5 3 2 8 8 N 1.31506 * 120.00160 * 6.92170 * 7 5 3 9 9 Si 1.86801 * 119.99542 * 186.91767 * 7 5 3 10 10 H 1.48499 * 109.47092 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47290 * 59.99947 * 9 7 5 12 12 H 1.48503 * 109.47095 * 299.99967 * 9 7 5 13 13 N 1.46905 * 109.47179 * 65.11751 * 3 2 1 14 14 C 1.46900 * 111.00026 * 200.90227 * 13 3 2 15 15 H 1.08996 * 109.54209 * 328.96304 * 14 13 3 16 16 C 1.53176 * 109.53951 * 89.13557 * 14 13 3 17 17 C 1.53111 * 109.15295 * 176.75963 * 16 14 13 18 18 O 1.42905 * 109.48577 * 302.52151 * 17 16 14 19 19 C 1.42906 * 114.09551 * 61.11431 * 18 17 16 20 20 H 1.09006 * 109.48975 * 58.82799 * 19 18 17 21 21 C 1.52998 * 109.47977 * 178.85479 * 19 18 17 22 22 C 1.52995 * 109.47555 * 294.94472 * 21 19 18 23 23 C 1.53091 * 109.41528 * 298.84060 * 19 18 17 24 24 H 1.09007 * 109.46606 * 304.93003 * 1 2 3 25 25 H 1.08992 * 109.46982 * 64.92723 * 1 2 3 26 26 H 1.08994 * 109.47068 * 184.93275 * 1 2 3 27 27 H 1.08994 * 109.47123 * 240.00296 * 2 1 3 28 28 H 1.08996 * 109.47436 * 119.99770 * 2 1 3 29 29 H 0.97001 * 120.00294 * 355.49738 * 8 7 5 30 30 H 1.00900 * 110.99930 * 76.94539 * 13 3 2 31 31 H 1.08996 * 109.52649 * 296.75094 * 16 14 13 32 32 H 1.08999 * 109.52469 * 56.94521 * 16 14 13 33 33 H 1.09006 * 109.47975 * 182.49931 * 17 16 14 34 34 H 1.08996 * 109.41504 * 62.51237 * 17 16 14 35 35 H 1.08997 * 109.46856 * 54.94310 * 21 19 18 36 36 H 1.09005 * 109.46999 * 174.93932 * 21 19 18 37 37 H 1.09004 * 109.46673 * 300.00133 * 22 21 19 38 38 H 1.09005 * 109.47408 * 59.99710 * 22 21 19 39 39 H 1.08994 * 109.47571 * 180.02562 * 22 21 19 40 40 H 1.09002 * 109.52486 * 297.70287 * 23 19 18 41 41 H 1.09003 * 109.52243 * 177.51135 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6038 1.9822 -0.8406 5 6 3.5417 1.4445 -0.1266 6 1 4.1512 1.8239 0.6801 7 6 4.1374 0.9618 -1.2726 8 7 3.3979 0.6269 -2.3072 9 14 5.9951 0.7836 -1.3555 10 1 6.3821 0.2481 -2.6854 11 1 6.4507 -0.1494 -0.2939 12 1 6.6292 2.1111 -1.1533 13 7 1.6538 2.0985 1.2565 14 6 1.6689 3.5604 1.1134 15 1 2.4315 3.8481 0.3897 16 6 0.2972 4.0422 0.6312 17 6 0.2975 5.5718 0.5627 18 8 0.6229 6.1063 1.8475 19 6 1.9149 5.7276 2.3268 20 1 2.6763 6.0595 1.6209 21 6 2.1643 6.3775 3.6892 22 6 2.2242 7.8976 3.5260 23 6 1.9789 4.2046 2.4681 24 1 -0.3633 0.5885 0.8426 25 1 -0.3633 0.4355 -0.9308 26 1 -0.3633 -1.0238 0.0884 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.4305 0.6574 -2.2421 30 1 2.2486 1.8033 2.0162 31 1 0.0941 3.6321 -0.3581 32 1 -0.4715 3.7102 1.3290 33 1 -0.6900 5.9224 0.2627 34 1 1.0375 5.9017 -0.1664 35 1 1.3538 6.1169 4.3698 36 1 3.1098 6.0182 4.0956 37 1 3.0347 8.1582 2.8453 38 1 1.2787 8.2570 3.1196 39 1 2.4023 8.3605 4.4965 40 1 1.2452 3.8759 3.2042 41 1 2.9775 3.9104 2.7913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226595506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:15 Heat of formation + Delta-G solvation = -96.468276 kcal Electronic energy + Delta-G solvation = -18486.271847 eV Core-core repulsion = 15784.981843 eV Total energy + Delta-G solvation = -2701.290004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66195 -38.23982 -35.34441 -34.90364 -33.43373 -31.35840 -30.66599 -27.69499 -25.48668 -24.63954 -24.48124 -22.08481 -21.56645 -21.04189 -19.13983 -17.38638 -17.13304 -16.52686 -15.93529 -15.70469 -15.51176 -15.24059 -14.91364 -14.57106 -14.33466 -14.11624 -13.93644 -13.45312 -13.17261 -12.74024 -12.70044 -12.60439 -12.39217 -12.34013 -12.06815 -12.01156 -11.85053 -11.72369 -11.68874 -11.50229 -11.08938 -10.88256 -10.49164 -10.45797 -9.16895 -8.51598 -6.36164 1.48400 1.54841 1.74035 2.53083 2.80307 3.16278 3.37229 3.71641 3.94631 3.97240 4.17513 4.22164 4.31580 4.39407 4.40855 4.47669 4.51937 4.59034 4.67370 4.75055 4.77745 4.85390 4.93458 4.96567 5.08929 5.10955 5.11941 5.18944 5.22423 5.30126 5.39915 5.44897 5.45689 5.63711 5.95611 5.98989 6.25634 6.49564 6.56900 6.77700 7.45871 8.75356 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.006861 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.577363 B = 4080.049866 C = 4813.332977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C 0.210 3.790 4 H -0.006 1.006 5 C -0.634 4.634 6 H 0.041 0.959 7 C -0.023 4.023 8 N -0.932 5.932 9 Si 1.106 2.894 10 H -0.285 1.285 11 H -0.271 1.271 12 H -0.277 1.277 13 N -0.668 5.668 14 C 0.090 3.910 15 H 0.013 0.987 16 C -0.132 4.132 17 C 0.067 3.933 18 O -0.384 6.384 19 C 0.092 3.908 20 H 0.047 0.953 21 C -0.111 4.111 22 C -0.146 4.146 23 C -0.139 4.139 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.330 0.670 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 9.815 10.021 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.101 3.899 4 H 0.012 0.988 5 C -0.673 4.673 6 H 0.060 0.940 7 C -0.223 4.223 8 N -0.569 5.569 9 Si 0.929 3.071 10 H -0.210 1.210 11 H -0.197 1.197 12 H -0.202 1.202 13 N -0.297 5.297 14 C -0.020 4.020 15 H 0.032 0.968 16 C -0.171 4.171 17 C -0.010 4.010 18 O -0.303 6.303 19 C 0.034 3.966 20 H 0.065 0.935 21 C -0.148 4.148 22 C -0.203 4.203 23 C -0.177 4.177 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.287 9.459 9.001 13.465 hybrid contribution -0.037 0.039 0.257 0.263 sum -3.325 9.498 9.258 13.674 Atomic orbital electron populations 1.21591 0.95423 1.00637 1.00914 1.21446 0.95460 0.98192 0.99331 1.19056 0.92090 0.91125 0.87676 0.98828 1.22944 0.93947 1.45426 1.04954 0.94042 1.27002 1.10377 0.93022 0.91879 1.70900 1.07351 1.47648 1.31033 0.83068 0.70343 0.77337 0.76377 1.21041 1.19672 1.20218 1.60832 1.57122 1.04936 1.06790 1.21380 0.95692 0.88761 0.96165 0.96840 1.22105 0.97531 0.96269 1.01176 1.22597 1.01762 0.91945 0.84713 1.87853 1.34888 1.72590 1.34989 1.22195 0.84888 0.92604 0.96902 0.93504 1.21547 1.02814 0.96483 0.93994 1.21693 1.01783 0.94718 1.02148 1.22336 1.02366 0.96159 0.96859 0.91754 0.94846 0.92906 0.94702 0.94009 0.92689 0.85319 0.93077 0.90755 0.86725 0.94018 0.90860 0.89534 0.93047 0.92872 0.91174 0.90215 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.86 71.98 0.71 -4.28 16 2 C -0.11 -4.94 5.27 30.60 0.16 -4.77 16 3 C 0.21 10.38 1.44 44.17 0.06 10.44 16 4 H -0.01 -0.34 7.00 -2.39 -0.02 -0.36 16 5 C -0.63 -34.71 8.03 25.60 0.21 -34.51 16 6 H 0.04 2.26 7.78 -2.91 -0.02 2.24 16 7 C -0.02 -1.29 5.20 84.66 0.44 -0.85 16 8 N -0.93 -56.02 13.04 21.45 0.28 -55.74 16 9 Si 1.11 49.95 29.91 68.60 2.05 52.00 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.67 -27.65 5.44 -472.69 -2.57 -30.22 16 14 C 0.09 3.40 2.36 45.03 0.11 3.51 16 15 H 0.01 0.61 7.45 -2.39 -0.02 0.59 16 16 C -0.13 -4.44 5.68 30.69 0.17 -4.27 16 17 C 0.07 1.90 6.84 72.02 0.49 2.39 16 18 O -0.38 -11.06 9.95 -148.98 -1.48 -12.54 16 19 C 0.09 2.52 2.64 30.62 0.08 2.60 16 20 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 21 C -0.11 -2.35 5.64 30.59 0.17 -2.18 16 22 C -0.15 -2.77 9.81 71.98 0.71 -2.07 16 23 C -0.14 -4.22 4.65 30.68 0.14 -4.08 16 24 H 0.06 2.40 7.63 -2.38 -0.02 2.38 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.03 1.81 6.08 -2.39 -0.01 1.80 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.26 15.90 5.82 -92.71 -0.54 15.36 16 30 H 0.33 13.48 8.08 -89.69 -0.73 12.75 16 31 H 0.05 1.88 7.74 -2.39 -0.02 1.86 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.10 7.83 -2.38 -0.02 1.08 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -61.14 318.34 2.21 -58.93 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.48 Total: 25.63 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 3.46 Total: -38.05 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.29 Total: -85.96 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.48 Total: -12.54 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Total: -61.14 2.21 -58.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226595506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.541 kcal (2) G-P(sol) polarization free energy of solvation -61.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds