Wall clock time and date at job start Sun Mar 29 2020 23:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 H 1.08996 * 109.47200 * 305.18702 * 3 2 1 5 5 C 1.50698 * 109.47002 * 185.18115 * 3 2 1 6 6 H 1.08004 * 119.99779 * 240.00356 * 5 3 2 7 7 C 1.37877 * 120.00198 * 60.00644 * 5 3 2 8 8 N 1.31513 * 120.00145 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99778 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46936 * 270.00183 * 9 7 5 11 11 H 1.48498 * 109.47247 * 30.00038 * 9 7 5 12 12 H 1.48495 * 109.47333 * 150.00512 * 9 7 5 13 13 N 1.46903 * 109.46934 * 65.18314 * 3 2 1 14 14 C 1.46892 * 111.00142 * 206.00430 * 13 3 2 15 15 C 1.53000 * 109.47305 * 174.55573 * 14 13 3 16 16 H 1.09004 * 109.47088 * 305.00264 * 15 14 13 17 17 C 1.53001 * 109.47008 * 64.99813 * 15 14 13 18 18 C 1.53000 * 109.47008 * 179.97438 * 17 15 14 19 19 C 1.52993 * 109.47542 * 300.00320 * 18 17 15 20 20 C 1.53001 * 109.47231 * 59.99816 * 19 18 17 21 21 H 1.09001 * 109.47328 * 60.00143 * 20 19 18 22 22 O 1.42903 * 109.47374 * 180.02562 * 20 19 18 23 23 C 1.52993 * 109.47542 * 185.00133 * 15 14 13 24 24 H 1.09001 * 109.47357 * 295.39630 * 1 2 3 25 25 H 1.09008 * 109.47323 * 55.39839 * 1 2 3 26 26 H 1.09003 * 109.47213 * 175.39121 * 1 2 3 27 27 H 1.09007 * 109.46809 * 240.00462 * 2 1 3 28 28 H 1.09000 * 109.46965 * 120.00923 * 2 1 3 29 29 H 0.97003 * 120.00120 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99641 * 82.04782 * 13 3 2 31 31 H 1.09003 * 109.47204 * 294.55636 * 14 13 3 32 32 H 1.09000 * 109.46983 * 54.55772 * 14 13 3 33 33 H 1.09001 * 109.47446 * 299.99952 * 17 15 14 34 34 H 1.09001 * 109.47328 * 60.00368 * 17 15 14 35 35 H 1.09004 * 109.47088 * 60.00451 * 18 17 15 36 36 H 1.09004 * 109.47339 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47639 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47035 * 300.00163 * 19 18 17 39 39 H 0.96698 * 113.99774 * 300.00093 * 22 20 19 40 40 H 1.09004 * 109.47035 * 300.00163 * 23 15 14 41 41 H 1.09002 * 109.47581 * 59.99655 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 -0.8398 5 6 3.5415 1.4444 -0.1283 6 1 4.1491 1.8881 0.6466 7 6 4.1396 0.8797 -1.2349 8 7 5.4499 0.8819 -1.3471 9 14 3.0887 0.1118 -2.5747 10 1 2.8687 -1.3247 -2.2689 11 1 1.7798 0.8103 -2.6386 12 1 3.7820 0.2390 -3.8817 13 7 1.6551 2.0979 1.2571 14 6 1.5526 3.5528 1.0824 15 6 1.0205 4.1849 2.3701 16 1 0.0770 3.7124 2.6439 17 6 2.0373 3.9829 3.4954 18 6 1.5055 4.6156 4.7829 19 6 1.2811 6.1126 4.5608 20 6 0.2643 6.3145 3.4356 21 1 -0.6793 5.8425 3.7094 22 8 0.0551 7.7128 3.2277 23 6 0.7956 5.6819 2.1485 24 1 -0.3634 0.4407 0.9283 25 1 -0.3634 0.5836 -0.8459 26 1 -0.3634 -1.0244 -0.0826 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 5.8707 0.4843 -2.1254 30 1 2.3006 1.8671 1.9975 31 1 2.5374 3.9619 0.8568 32 1 0.8708 3.7729 0.2610 33 1 2.1974 2.9164 3.6534 34 1 2.9807 4.4554 3.2217 35 1 0.5619 4.1435 5.0569 36 1 2.2301 4.4722 5.5845 37 1 0.9018 6.5632 5.4779 38 1 2.2247 6.5847 4.2869 39 1 -0.2822 8.1797 4.0043 40 1 1.7390 6.1543 1.8747 41 1 0.0712 5.8258 1.3468 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227751540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:47 Heat of formation + Delta-G solvation = -80.689077 kcal Electronic energy + Delta-G solvation = -18156.443170 eV Core-core repulsion = 15455.837403 eV Total energy + Delta-G solvation = -2700.605767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.16066 -36.73172 -35.43038 -32.75912 -31.86116 -30.37670 -29.18504 -26.90332 -24.32986 -22.48676 -22.24337 -20.82696 -19.80775 -19.59167 -17.12069 -16.97643 -15.47395 -15.16572 -14.80175 -14.47648 -13.97985 -13.73318 -13.52101 -13.02749 -12.75421 -12.62372 -12.50702 -11.99620 -11.84747 -11.63162 -11.42721 -11.08152 -11.04178 -10.88923 -10.67097 -10.54057 -10.31258 -10.21166 -9.99588 -9.73800 -9.65880 -9.40122 -9.19297 -8.56695 -7.31882 -6.12040 -4.12755 3.26625 3.37271 3.39891 4.10041 4.37960 4.70989 4.73884 5.02069 5.15812 5.21334 5.24745 5.32340 5.52923 5.55298 5.57432 5.67563 5.87473 6.01457 6.05165 6.06692 6.09928 6.13708 6.22771 6.28160 6.31317 6.41516 6.46124 6.57243 6.71833 6.75658 6.79236 6.99257 7.12702 7.29817 7.56611 7.58373 8.06794 8.40733 8.51492 8.90589 9.51814 11.00951 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.005456 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.704871 B = 5130.321149 C = 5327.538690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.299 1.299 13 N -0.681 5.681 14 C 0.071 3.929 15 C -0.079 4.079 16 H 0.075 0.925 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.150 4.150 20 C 0.106 3.894 21 H 0.053 0.947 22 O -0.570 6.570 23 C -0.107 4.107 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.264 0.736 30 H 0.333 0.667 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.373 0.627 40 H 0.068 0.932 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 7.772 10.388 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.073 3.927 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.190 1.190 12 H -0.227 1.227 13 N -0.311 5.311 14 C -0.059 4.059 15 C -0.098 4.098 16 H 0.093 0.907 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.188 4.188 20 C 0.047 3.953 21 H 0.071 0.929 22 O -0.376 6.376 23 C -0.145 4.145 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.219 0.781 40 H 0.087 0.913 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.899 7.455 9.571 16.309 hybrid contribution 0.474 -0.132 -0.295 0.574 sum -10.425 7.323 9.277 15.760 Atomic orbital electron populations 1.21719 0.97595 0.99073 1.01508 1.21814 0.93802 0.99424 1.00302 1.19575 0.94248 0.90580 0.88257 0.95128 1.21749 0.90585 1.38983 1.07037 0.91022 1.25011 0.94768 0.95318 0.97948 1.69919 1.08969 1.45119 1.29650 0.86806 0.80628 0.79841 0.80656 1.20474 1.18964 1.22655 1.60771 1.54666 1.06606 1.09007 1.21778 0.99261 0.89613 0.95287 1.21111 0.99386 0.93354 0.95907 0.90706 1.21630 0.98653 1.01265 0.94005 1.21469 1.01191 0.94406 0.98190 1.22265 1.00630 0.97661 0.98231 1.21837 0.96673 0.81038 0.95730 0.92936 1.86541 1.88531 1.21422 1.41060 1.21493 1.01823 0.95213 0.95939 0.92051 0.94192 0.94957 0.93818 0.92460 0.92669 0.84957 0.94879 0.92154 0.91025 0.92010 0.92015 0.91988 0.92343 0.91233 0.78091 0.91312 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.75 37.16 0.36 -2.25 16 2 C -0.12 -2.52 5.11 -26.73 -0.14 -2.66 16 3 C 0.18 4.25 1.57 -68.86 -0.11 4.14 16 4 H 0.03 0.76 6.75 -51.93 -0.35 0.41 16 5 C -0.54 -15.01 9.06 -34.44 -0.31 -15.32 16 6 H 0.07 2.14 7.97 -52.48 -0.42 1.72 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 9 Si 0.89 22.14 24.41 -169.99 -4.15 17.99 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.36 16 11 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 12 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 13 N -0.68 -13.38 5.74 -107.96 -0.62 -14.00 16 14 C 0.07 1.26 4.97 -3.83 -0.02 1.24 16 15 C -0.08 -1.11 2.40 -90.62 -0.22 -1.33 16 16 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.12 -1.57 4.97 -26.73 -0.13 -1.70 16 18 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 19 C -0.15 -1.54 5.55 -26.73 -0.15 -1.69 16 20 C 0.11 1.20 3.47 -26.76 -0.09 1.10 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 O -0.57 -6.51 13.32 -35.23 -0.47 -6.98 16 23 C -0.11 -1.42 4.85 -26.76 -0.13 -1.55 16 24 H 0.06 1.07 7.89 -51.93 -0.41 0.67 16 25 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 1.02 3.21 -51.92 -0.17 0.85 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.33 6.56 6.85 -39.29 -0.27 6.30 16 31 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 33 H 0.07 1.00 6.81 -51.93 -0.35 0.64 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.37 2.54 9.08 45.56 0.41 2.95 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -30.14 311.56 -7.60 -37.75 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.64 Total: 6.63 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.19 Total: -19.43 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.15 Total: -40.65 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.47 Total: -6.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.15 Total: 17.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.14 -7.60 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227751540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.943 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds