Wall clock time and date at job start Sun Mar 29 2020 23:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 H 1.08996 * 109.47200 * 305.18702 * 3 2 1 5 5 C 1.50698 * 109.47002 * 185.18115 * 3 2 1 6 6 H 1.08004 * 119.99779 * 240.00356 * 5 3 2 7 7 C 1.37877 * 120.00198 * 60.00644 * 5 3 2 8 8 N 1.31513 * 120.00145 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99778 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46936 * 270.00183 * 9 7 5 11 11 H 1.48498 * 109.47247 * 30.00038 * 9 7 5 12 12 H 1.48495 * 109.47333 * 150.00512 * 9 7 5 13 13 N 1.46903 * 109.46934 * 65.18314 * 3 2 1 14 14 C 1.46892 * 111.00142 * 206.00430 * 13 3 2 15 15 C 1.53000 * 109.47305 * 174.55573 * 14 13 3 16 16 H 1.09004 * 109.47088 * 305.00264 * 15 14 13 17 17 C 1.53001 * 109.47008 * 64.99813 * 15 14 13 18 18 C 1.53000 * 109.47008 * 179.97438 * 17 15 14 19 19 C 1.52993 * 109.47542 * 300.00320 * 18 17 15 20 20 C 1.53001 * 109.47231 * 59.99816 * 19 18 17 21 21 H 1.09001 * 109.47328 * 60.00143 * 20 19 18 22 22 O 1.42903 * 109.47374 * 180.02562 * 20 19 18 23 23 C 1.52993 * 109.47542 * 185.00133 * 15 14 13 24 24 H 1.09001 * 109.47357 * 295.39630 * 1 2 3 25 25 H 1.09008 * 109.47323 * 55.39839 * 1 2 3 26 26 H 1.09003 * 109.47213 * 175.39121 * 1 2 3 27 27 H 1.09007 * 109.46809 * 240.00462 * 2 1 3 28 28 H 1.09000 * 109.46965 * 120.00923 * 2 1 3 29 29 H 0.97003 * 120.00120 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99641 * 82.04782 * 13 3 2 31 31 H 1.09003 * 109.47204 * 294.55636 * 14 13 3 32 32 H 1.09000 * 109.46983 * 54.55772 * 14 13 3 33 33 H 1.09001 * 109.47446 * 299.99952 * 17 15 14 34 34 H 1.09001 * 109.47328 * 60.00368 * 17 15 14 35 35 H 1.09004 * 109.47088 * 60.00451 * 18 17 15 36 36 H 1.09004 * 109.47339 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47639 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47035 * 300.00163 * 19 18 17 39 39 H 0.96698 * 113.99774 * 300.00093 * 22 20 19 40 40 H 1.09004 * 109.47035 * 300.00163 * 23 15 14 41 41 H 1.09002 * 109.47581 * 59.99655 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 -0.8398 5 6 3.5415 1.4444 -0.1283 6 1 4.1491 1.8881 0.6466 7 6 4.1396 0.8797 -1.2349 8 7 5.4499 0.8819 -1.3471 9 14 3.0887 0.1118 -2.5747 10 1 2.8687 -1.3247 -2.2689 11 1 1.7798 0.8103 -2.6386 12 1 3.7820 0.2390 -3.8817 13 7 1.6551 2.0979 1.2571 14 6 1.5526 3.5528 1.0824 15 6 1.0205 4.1849 2.3701 16 1 0.0770 3.7124 2.6439 17 6 2.0373 3.9829 3.4954 18 6 1.5055 4.6156 4.7829 19 6 1.2811 6.1126 4.5608 20 6 0.2643 6.3145 3.4356 21 1 -0.6793 5.8425 3.7094 22 8 0.0551 7.7128 3.2277 23 6 0.7956 5.6819 2.1485 24 1 -0.3634 0.4407 0.9283 25 1 -0.3634 0.5836 -0.8459 26 1 -0.3634 -1.0244 -0.0826 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 5.8707 0.4843 -2.1254 30 1 2.3006 1.8671 1.9975 31 1 2.5374 3.9619 0.8568 32 1 0.8708 3.7729 0.2610 33 1 2.1974 2.9164 3.6534 34 1 2.9807 4.4554 3.2217 35 1 0.5619 4.1435 5.0569 36 1 2.2301 4.4722 5.5845 37 1 0.9018 6.5632 5.4779 38 1 2.2247 6.5847 4.2869 39 1 -0.2822 8.1797 4.0043 40 1 1.7390 6.1543 1.8747 41 1 0.0712 5.8258 1.3468 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227751540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:47 Heat of formation + Delta-G solvation = -102.963516 kcal Electronic energy + Delta-G solvation = -18157.409062 eV Core-core repulsion = 15455.837403 eV Total energy + Delta-G solvation = -2701.571659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20763 -38.24419 -36.62772 -34.44780 -33.64051 -31.61062 -30.30003 -28.70418 -25.80279 -24.15662 -23.29935 -21.95834 -21.59544 -20.68944 -19.10463 -18.00133 -17.10280 -16.52619 -16.21615 -15.60053 -15.35367 -15.10744 -14.87940 -14.63666 -14.34337 -14.04761 -13.61156 -13.50606 -13.38588 -13.03248 -12.93817 -12.57155 -12.43306 -12.19014 -12.07722 -11.92052 -11.68351 -11.50053 -11.37310 -11.28560 -11.19180 -11.01601 -10.68878 -10.59810 -9.07699 -8.34983 -6.39886 1.28468 1.33599 1.44314 2.28430 3.00407 3.17872 3.67199 3.75443 3.84095 4.12161 4.18921 4.30017 4.39621 4.43415 4.48394 4.53343 4.57456 4.64478 4.67698 4.76383 4.91146 4.93118 4.99174 5.09940 5.15928 5.16704 5.23886 5.28197 5.31817 5.33953 5.42037 5.47169 5.49498 5.60593 5.65158 6.07945 6.40521 6.62854 6.80221 6.95257 7.29274 8.81406 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032040 B = 0.005456 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.704871 B = 5130.321149 C = 5327.538690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.187 3.813 4 H 0.021 0.979 5 C -0.545 4.545 6 H 0.032 0.968 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.249 1.249 12 H -0.301 1.301 13 N -0.665 5.665 14 C 0.071 3.929 15 C -0.064 4.064 16 H 0.087 0.913 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.145 4.145 20 C 0.110 3.890 21 H 0.069 0.931 22 O -0.588 6.588 23 C -0.107 4.107 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.265 0.735 30 H 0.332 0.668 31 H 0.001 0.999 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.394 0.606 40 H 0.049 0.951 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.419 7.643 11.373 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.077 3.923 4 H 0.039 0.961 5 C -0.584 4.584 6 H 0.050 0.950 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.172 1.172 12 H -0.229 1.229 13 N -0.294 5.294 14 C -0.059 4.059 15 C -0.083 4.083 16 H 0.105 0.895 17 C -0.156 4.156 18 C -0.146 4.146 19 C -0.183 4.183 20 C 0.052 3.948 21 H 0.087 0.913 22 O -0.397 6.397 23 C -0.145 4.145 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.244 0.756 40 H 0.068 0.932 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.749 7.343 10.591 18.844 hybrid contribution 1.421 -0.004 -0.542 1.521 sum -12.328 7.339 10.049 17.516 Atomic orbital electron populations 1.21632 0.94440 1.00843 1.02099 1.21745 0.96580 0.97446 0.99662 1.19465 0.91107 0.92250 0.89485 0.96061 1.22076 0.92922 1.37648 1.05769 0.94994 1.25870 0.95832 0.96091 1.00543 1.70066 1.10989 1.46936 1.30750 0.85807 0.79388 0.79698 0.77257 1.18971 1.17247 1.22883 1.60810 1.53748 1.07490 1.07361 1.21847 0.97750 0.88604 0.97676 1.20954 0.99716 0.93733 0.93915 0.89457 1.21610 0.97758 1.00847 0.95378 1.21431 1.01982 0.94631 0.96588 1.22229 0.99808 0.97220 0.99058 1.21737 0.97479 0.81210 0.94381 0.91286 1.86487 1.88835 1.21475 1.42868 1.21453 1.00953 0.94586 0.97538 0.91088 0.94085 0.92527 0.95052 0.92576 0.92592 0.85023 0.98052 0.92291 0.91886 0.93964 0.90529 0.91016 0.89541 0.92688 0.75637 0.93217 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.75 71.98 0.70 -3.76 16 2 C -0.12 -4.88 5.11 30.59 0.16 -4.72 16 3 C 0.19 8.67 1.57 44.17 0.07 8.74 16 4 H 0.02 1.04 6.75 -2.39 -0.02 1.02 16 5 C -0.55 -30.97 9.06 25.60 0.23 -30.74 16 6 H 0.03 2.01 7.97 -2.91 -0.02 1.99 16 7 C 0.01 0.86 5.45 84.65 0.46 1.32 16 8 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 9 Si 0.95 45.67 24.41 68.60 1.67 47.35 16 10 H -0.26 -12.01 6.83 99.48 0.68 -11.33 16 11 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 13 N -0.67 -26.07 5.74 -495.47 -2.84 -28.91 16 14 C 0.07 2.58 4.97 86.30 0.43 3.00 16 15 C -0.06 -1.77 2.40 -10.80 -0.03 -1.79 16 16 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 17 C -0.12 -3.09 4.97 30.59 0.15 -2.94 16 18 C -0.11 -2.09 5.92 30.59 0.18 -1.91 16 19 C -0.15 -2.62 5.55 30.59 0.17 -2.45 16 20 C 0.11 2.24 3.47 30.58 0.11 2.35 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 O -0.59 -12.10 13.32 -148.98 -1.98 -14.08 16 23 C -0.11 -2.79 4.85 30.57 0.15 -2.64 16 24 H 0.07 2.24 7.89 -2.39 -0.02 2.22 16 25 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.39 3.21 -2.38 -0.01 1.38 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.33 13.30 6.85 -89.69 -0.61 12.68 16 31 H 0.00 0.05 8.12 -2.39 -0.02 0.03 16 32 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 33 H 0.06 1.74 6.81 -2.39 -0.02 1.73 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.39 4.20 9.08 -74.06 -0.67 3.52 16 40 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.34 311.56 -0.45 -66.79 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.38 Total: 23.82 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.78 Total: -35.55 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.54 Total: -88.33 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.98 Total: -14.08 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.35 kcal Total: -66.34 -0.45 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227751540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.174 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds