Wall clock time and date at job start Sun Mar 29 2020 23:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 H 1.08997 * 109.46895 * 174.23085 * 3 2 1 5 5 C 1.50702 * 109.47389 * 54.22807 * 3 2 1 6 6 H 1.07997 * 120.00007 * 240.00169 * 5 3 2 7 7 C 1.37880 * 119.99673 * 60.00142 * 5 3 2 8 8 N 1.31515 * 119.99848 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00002 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46826 * 89.99841 * 9 7 5 11 11 H 1.48491 * 109.47486 * 210.00052 * 9 7 5 12 12 H 1.48507 * 109.47032 * 330.00371 * 9 7 5 13 13 N 1.46897 * 109.46966 * 294.22987 * 3 2 1 14 14 C 1.46899 * 111.00138 * 274.93784 * 13 3 2 15 15 C 1.53177 * 109.54284 * 274.60610 * 14 13 3 16 16 C 1.53097 * 109.16190 * 183.16407 * 15 14 13 17 17 H 1.08999 * 109.47713 * 297.60101 * 16 15 14 18 18 C 1.53002 * 109.47904 * 177.58055 * 16 15 14 19 19 O 1.42900 * 109.42455 * 57.59332 * 16 15 14 20 20 C 1.42899 * 114.09766 * 298.84322 * 19 16 15 21 21 H 1.09004 * 109.48462 * 181.15473 * 20 19 16 22 22 C 1.52995 * 109.48399 * 301.18102 * 20 19 16 23 23 C 1.53096 * 109.41444 * 61.16295 * 20 19 16 24 24 H 1.08999 * 109.46467 * 178.71829 * 1 2 3 25 25 H 1.09000 * 109.47299 * 298.71972 * 1 2 3 26 26 H 1.09003 * 109.46984 * 58.72349 * 1 2 3 27 27 H 1.08993 * 109.47369 * 239.99818 * 2 1 3 28 28 H 1.08995 * 109.47187 * 119.99384 * 2 1 3 29 29 H 0.97003 * 119.99488 * 180.02562 * 8 7 5 30 30 H 1.00904 * 111.00406 * 38.88716 * 13 3 2 31 31 H 1.08994 * 109.54491 * 34.85914 * 14 13 3 32 32 H 1.09000 * 109.53161 * 63.25255 * 15 14 13 33 33 H 1.09002 * 109.51267 * 303.05972 * 15 14 13 34 34 H 1.08999 * 109.47461 * 300.02198 * 18 16 15 35 35 H 1.09003 * 109.47136 * 180.02562 * 18 16 15 36 36 H 1.09001 * 109.47177 * 60.02014 * 18 16 15 37 37 H 1.09004 * 109.47501 * 59.99444 * 22 20 19 38 38 H 1.08995 * 109.47362 * 179.97438 * 22 20 19 39 39 H 1.08999 * 109.47091 * 300.00095 * 22 20 19 40 40 H 1.08997 * 109.52417 * 62.28950 * 23 20 19 41 41 H 1.08993 * 109.52689 * 182.48930 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1250 1.4443 0.1033 5 6 1.4243 2.1931 1.1528 6 1 0.8170 3.0663 0.9659 7 6 1.6365 1.7648 2.4461 8 7 2.3766 0.7017 2.6736 9 14 0.8741 2.6954 3.8751 10 1 -0.4675 2.1327 4.1727 11 1 1.7429 2.5631 5.0720 12 1 0.7406 4.1303 3.5165 13 7 1.6672 2.0936 -1.2630 14 6 2.6561 1.8122 -2.3122 15 6 3.8042 2.8217 -2.2184 16 6 4.7892 2.5704 -3.3631 17 1 5.2171 1.5730 -3.2620 18 6 5.9078 3.6131 -3.3119 19 8 4.1018 2.6698 -4.6120 20 6 3.0482 1.7184 -4.7754 21 1 2.5910 1.8472 -5.7565 22 6 3.6166 0.3027 -4.6594 23 6 1.9931 1.9357 -3.6876 24 1 -0.3632 -1.0274 -0.0230 25 1 -0.3634 0.4938 0.9012 26 1 -0.3633 0.5335 -0.8783 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.5255 0.4002 3.5835 30 1 0.7421 1.8153 -1.5541 31 1 3.0457 0.8023 -2.1846 32 1 4.3170 2.7027 -1.2639 33 1 3.4065 3.8336 -2.2956 34 1 5.4798 4.6104 -3.4130 35 1 6.6088 3.4343 -4.1273 36 1 6.4317 3.5374 -2.3591 37 1 4.0735 0.1738 -3.6781 38 1 2.8128 -0.4229 -4.7836 39 1 4.3685 0.1485 -5.4332 40 1 1.5589 2.9297 -3.7947 41 1 1.2106 1.1830 -3.7836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227785196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:26 Heat of formation + Delta-G solvation = -65.335655 kcal Electronic energy + Delta-G solvation = -18761.932547 eV Core-core repulsion = 16061.992554 eV Total energy + Delta-G solvation = -2699.939992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71794 -36.49430 -33.53221 -33.09998 -31.46251 -29.99738 -28.07080 -26.48529 -25.84432 -23.34176 -22.39749 -21.48316 -19.23270 -18.89744 -16.44066 -15.93578 -15.69410 -15.09230 -14.67532 -14.29030 -13.98649 -13.52950 -13.24887 -12.61780 -12.52495 -12.44886 -12.39120 -11.94379 -11.82685 -11.74000 -11.40872 -11.06146 -10.93270 -10.80375 -10.74709 -10.56060 -10.26815 -10.15054 -9.83083 -9.63272 -9.50649 -9.17588 -8.90289 -8.33570 -7.19237 -5.96723 -3.97864 3.32450 3.39461 3.44063 3.94191 4.44737 4.92394 4.95820 5.06949 5.21340 5.35004 5.35560 5.42207 5.52852 5.59675 5.71709 5.75070 5.86777 5.95508 6.06116 6.17447 6.19285 6.26174 6.32406 6.33414 6.36766 6.44166 6.56207 6.61350 6.83169 6.89556 7.28969 7.31473 7.49410 7.50312 7.71085 7.91513 8.30905 8.57993 8.65584 9.08239 9.65885 11.10407 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.006586 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.650637 B = 4250.420107 C = 4720.979468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.087 3.913 15 C -0.132 4.132 16 C 0.082 3.918 17 H 0.056 0.944 18 C -0.142 4.142 19 O -0.379 6.379 20 C 0.092 3.908 21 H 0.096 0.904 22 C -0.187 4.187 23 C -0.150 4.150 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.009 0.991 28 H 0.091 0.909 29 H 0.258 0.742 30 H 0.326 0.674 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 0.113 -12.121 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.023 4.023 15 C -0.171 4.171 16 C 0.024 3.976 17 H 0.073 0.927 18 C -0.199 4.199 19 O -0.298 6.298 20 C 0.034 3.966 21 H 0.114 0.886 22 C -0.244 4.244 23 C -0.188 4.188 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.027 0.973 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.027 0.759 -11.917 12.319 hybrid contribution -0.731 -0.849 0.932 1.457 sum 2.296 -0.090 -10.985 11.223 Atomic orbital electron populations 1.21561 0.97695 0.97947 1.01245 1.22108 0.95018 1.01287 1.00052 1.19213 0.95924 0.88465 0.85538 0.94994 1.21080 1.30325 1.11458 0.89755 0.92086 1.24911 0.95586 0.95198 0.98690 1.69886 1.39254 1.24215 1.20330 0.86590 0.78961 0.80404 0.82016 1.20889 1.21447 1.19929 1.60857 1.03505 1.63281 1.03468 1.21447 0.93905 0.96425 0.90533 1.22202 0.96079 1.00811 0.97981 1.22148 0.92604 0.98696 0.84126 0.92657 1.21737 0.97137 0.99086 1.01917 1.87907 1.48391 1.56745 1.36786 1.22071 0.87683 0.88158 0.98674 0.88580 1.22471 1.01822 0.97361 1.02792 1.22391 0.98185 1.02838 0.95430 0.95966 0.91521 0.95200 0.97267 0.89021 0.93177 0.85476 0.94504 0.90851 0.90826 0.91921 0.92449 0.91127 0.91595 0.91735 0.92239 0.90577 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.35 16 2 C -0.15 -3.37 5.48 -26.73 -0.15 -3.52 16 3 C 0.22 5.28 2.15 -68.86 -0.15 5.13 16 4 H 0.03 0.87 7.18 -51.93 -0.37 0.50 16 5 C -0.49 -13.12 7.35 -34.44 -0.25 -13.38 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.54 5.23 -17.82 -0.09 1.44 16 8 N -0.90 -25.21 11.39 55.43 0.63 -24.58 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.21 6.04 -100.76 -0.61 -14.82 16 14 C 0.09 1.55 2.06 -67.53 -0.14 1.42 16 15 C -0.13 -2.28 4.90 -26.59 -0.13 -2.41 16 16 C 0.08 1.21 2.94 -26.68 -0.08 1.13 16 17 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 18 C -0.14 -1.79 9.56 37.16 0.36 -1.43 16 19 O -0.38 -5.69 10.24 -35.23 -0.36 -6.05 16 20 C 0.09 1.23 3.91 -26.68 -0.10 1.13 16 21 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 22 C -0.19 -2.30 8.65 37.16 0.32 -1.98 16 23 C -0.15 -2.23 4.91 -26.59 -0.13 -2.36 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 26 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 27 H 0.01 0.19 7.38 -51.93 -0.38 -0.19 16 28 H 0.09 2.40 6.25 -51.93 -0.32 2.08 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.33 6.55 6.22 -39.29 -0.24 6.31 16 31 H 0.04 0.70 5.59 -51.93 -0.29 0.41 16 32 H 0.07 1.38 7.51 -51.93 -0.39 0.99 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.90 4.98 -51.93 -0.26 0.64 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -27.72 307.51 -7.99 -35.71 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.06 Total: 5.98 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -0.20 Total: -17.18 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.02 Total: -39.40 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.36 Total: -6.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.72 -7.99 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227785196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.628 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds