Wall clock time and date at job start Sun Mar 29 2020 23:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 H 1.08997 * 109.46895 * 174.23085 * 3 2 1 5 5 C 1.50702 * 109.47389 * 54.22807 * 3 2 1 6 6 H 1.07997 * 120.00007 * 240.00169 * 5 3 2 7 7 C 1.37880 * 119.99673 * 60.00142 * 5 3 2 8 8 N 1.31515 * 119.99848 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00002 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46826 * 89.99841 * 9 7 5 11 11 H 1.48491 * 109.47486 * 210.00052 * 9 7 5 12 12 H 1.48507 * 109.47032 * 330.00371 * 9 7 5 13 13 N 1.46897 * 109.46966 * 294.22987 * 3 2 1 14 14 C 1.46899 * 111.00138 * 274.93784 * 13 3 2 15 15 C 1.53177 * 109.54284 * 274.60610 * 14 13 3 16 16 C 1.53097 * 109.16190 * 183.16407 * 15 14 13 17 17 H 1.08999 * 109.47713 * 297.60101 * 16 15 14 18 18 C 1.53002 * 109.47904 * 177.58055 * 16 15 14 19 19 O 1.42900 * 109.42455 * 57.59332 * 16 15 14 20 20 C 1.42899 * 114.09766 * 298.84322 * 19 16 15 21 21 H 1.09004 * 109.48462 * 181.15473 * 20 19 16 22 22 C 1.52995 * 109.48399 * 301.18102 * 20 19 16 23 23 C 1.53096 * 109.41444 * 61.16295 * 20 19 16 24 24 H 1.08999 * 109.46467 * 178.71829 * 1 2 3 25 25 H 1.09000 * 109.47299 * 298.71972 * 1 2 3 26 26 H 1.09003 * 109.46984 * 58.72349 * 1 2 3 27 27 H 1.08993 * 109.47369 * 239.99818 * 2 1 3 28 28 H 1.08995 * 109.47187 * 119.99384 * 2 1 3 29 29 H 0.97003 * 119.99488 * 180.02562 * 8 7 5 30 30 H 1.00904 * 111.00406 * 38.88716 * 13 3 2 31 31 H 1.08994 * 109.54491 * 34.85914 * 14 13 3 32 32 H 1.09000 * 109.53161 * 63.25255 * 15 14 13 33 33 H 1.09002 * 109.51267 * 303.05972 * 15 14 13 34 34 H 1.08999 * 109.47461 * 300.02198 * 18 16 15 35 35 H 1.09003 * 109.47136 * 180.02562 * 18 16 15 36 36 H 1.09001 * 109.47177 * 60.02014 * 18 16 15 37 37 H 1.09004 * 109.47501 * 59.99444 * 22 20 19 38 38 H 1.08995 * 109.47362 * 179.97438 * 22 20 19 39 39 H 1.08999 * 109.47091 * 300.00095 * 22 20 19 40 40 H 1.08997 * 109.52417 * 62.28950 * 23 20 19 41 41 H 1.08993 * 109.52689 * 182.48930 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1250 1.4443 0.1033 5 6 1.4243 2.1931 1.1528 6 1 0.8170 3.0663 0.9659 7 6 1.6365 1.7648 2.4461 8 7 2.3766 0.7017 2.6736 9 14 0.8741 2.6954 3.8751 10 1 -0.4675 2.1327 4.1727 11 1 1.7429 2.5631 5.0720 12 1 0.7406 4.1303 3.5165 13 7 1.6672 2.0936 -1.2630 14 6 2.6561 1.8122 -2.3122 15 6 3.8042 2.8217 -2.2184 16 6 4.7892 2.5704 -3.3631 17 1 5.2171 1.5730 -3.2620 18 6 5.9078 3.6131 -3.3119 19 8 4.1018 2.6698 -4.6120 20 6 3.0482 1.7184 -4.7754 21 1 2.5910 1.8472 -5.7565 22 6 3.6166 0.3027 -4.6594 23 6 1.9931 1.9357 -3.6876 24 1 -0.3632 -1.0274 -0.0230 25 1 -0.3634 0.4938 0.9012 26 1 -0.3633 0.5335 -0.8783 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 2.5255 0.4002 3.5835 30 1 0.7421 1.8153 -1.5541 31 1 3.0457 0.8023 -2.1846 32 1 4.3170 2.7027 -1.2639 33 1 3.4065 3.8336 -2.2956 34 1 5.4798 4.6104 -3.4130 35 1 6.6088 3.4343 -4.1273 36 1 6.4317 3.5374 -2.3591 37 1 4.0735 0.1738 -3.6781 38 1 2.8128 -0.4229 -4.7836 39 1 4.3685 0.1485 -5.4332 40 1 1.5589 2.9297 -3.7947 41 1 1.2106 1.1830 -3.7836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227785196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:26 Heat of formation + Delta-G solvation = -82.367185 kcal Electronic energy + Delta-G solvation = -18762.671089 eV Core-core repulsion = 16061.992554 eV Total energy + Delta-G solvation = -2700.678535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95888 -38.20168 -35.16869 -34.25793 -33.31855 -31.41547 -29.50042 -27.88167 -27.51426 -25.21123 -23.65960 -22.82233 -21.02534 -20.21280 -18.20868 -17.29931 -17.03717 -16.81269 -16.31448 -15.60167 -15.48659 -14.94000 -14.85799 -14.29399 -14.11368 -13.79592 -13.63138 -13.48926 -12.97898 -12.88159 -12.81160 -12.65990 -12.60273 -12.48729 -12.34773 -12.01476 -11.91834 -11.74360 -11.56416 -11.31261 -11.03146 -10.83534 -10.43254 -10.37690 -8.91763 -8.05899 -6.13919 1.41353 1.43166 1.52948 2.44985 2.84142 3.22972 3.50599 3.77924 3.91488 4.03818 4.18183 4.24372 4.41565 4.43623 4.48007 4.53675 4.59231 4.60029 4.66872 4.74280 4.84742 4.92921 5.00712 5.04279 5.08757 5.11875 5.21392 5.24533 5.31517 5.40001 5.43241 5.47613 5.67856 5.74169 5.87264 6.33456 6.35412 6.71030 6.88866 7.00516 7.54106 8.99526 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.006586 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.650637 B = 4250.420107 C = 4720.979468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.226 3.774 4 H -0.005 1.005 5 C -0.500 4.500 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.086 3.914 15 C -0.128 4.128 16 C 0.087 3.913 17 H 0.058 0.942 18 C -0.139 4.139 19 O -0.385 6.385 20 C 0.090 3.910 21 H 0.123 0.877 22 C -0.184 4.184 23 C -0.143 4.143 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.060 0.940 29 H 0.258 0.742 30 H 0.332 0.668 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 0.076 -13.647 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.117 3.883 4 H 0.013 0.987 5 C -0.539 4.539 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.316 5.316 14 C -0.024 4.024 15 C -0.167 4.167 16 C 0.029 3.971 17 H 0.076 0.924 18 C -0.197 4.197 19 O -0.305 6.305 20 C 0.032 3.968 21 H 0.141 0.859 22 C -0.241 4.241 23 C -0.181 4.181 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.152 0.848 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.432 0.726 -13.459 13.696 hybrid contribution -0.533 -0.839 1.374 1.696 sum 1.899 -0.113 -12.085 12.234 Atomic orbital electron populations 1.21445 0.95867 0.99337 1.00899 1.21948 0.96560 1.00094 0.99149 1.18910 0.93439 0.89294 0.86659 0.98689 1.21298 1.30239 1.11328 0.91001 0.93151 1.25577 0.95993 0.95922 1.00920 1.70015 1.40155 1.25287 1.20673 0.85688 0.78382 0.79200 0.79156 1.20115 1.21251 1.19802 1.60742 1.04541 1.63037 1.03283 1.21513 0.93531 0.95897 0.91443 1.22145 0.96496 0.99988 0.98056 1.22101 0.92298 0.99557 0.83108 0.92373 1.21741 0.96740 0.98272 1.02899 1.87910 1.48799 1.57477 1.36329 1.22273 0.86899 0.88437 0.99188 0.85896 1.22438 1.02528 0.96968 1.02150 1.22342 0.98858 1.03121 0.93743 0.93811 0.94039 0.93155 0.95795 0.92186 0.93254 0.84828 0.95507 0.93486 0.91991 0.92075 0.90734 0.90703 0.93480 0.90392 0.90887 0.90997 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.39 71.98 0.68 -4.22 16 2 C -0.14 -6.44 5.48 30.60 0.17 -6.27 16 3 C 0.23 11.24 2.15 44.17 0.09 11.34 16 4 H 0.00 -0.27 7.18 -2.39 -0.02 -0.29 16 5 C -0.50 -27.39 7.35 25.60 0.19 -27.20 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.77 5.23 84.66 0.44 1.21 16 8 N -0.92 -52.80 11.39 21.45 0.24 -52.56 16 9 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.68 -28.69 6.04 -472.69 -2.86 -31.55 16 14 C 0.09 3.05 2.06 45.04 0.09 3.14 16 15 C -0.13 -4.50 4.90 30.69 0.15 -4.35 16 16 C 0.09 2.50 2.94 30.63 0.09 2.59 16 17 H 0.06 1.64 6.34 -2.39 -0.02 1.63 16 18 C -0.14 -3.36 9.56 71.98 0.69 -2.67 16 19 O -0.39 -10.80 10.24 -148.98 -1.52 -12.33 16 20 C 0.09 2.15 3.91 30.62 0.12 2.27 16 21 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 22 C -0.18 -4.05 8.65 71.98 0.62 -3.43 16 23 C -0.14 -3.95 4.91 30.69 0.15 -3.80 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.91 7.05 -2.39 -0.02 1.90 16 26 H 0.05 1.85 6.42 -2.39 -0.02 1.83 16 27 H 0.02 1.01 7.38 -2.39 -0.02 1.00 16 28 H 0.06 3.20 6.25 -2.39 -0.01 3.19 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.44 16 30 H 0.33 13.02 6.22 -89.69 -0.56 12.46 16 31 H 0.03 1.02 5.59 -2.39 -0.01 1.00 16 32 H 0.05 1.86 7.51 -2.39 -0.02 1.84 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.22 4.98 -2.38 -0.01 1.20 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -59.72 307.51 1.81 -57.92 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.44 Total: 23.78 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.48 Total: -31.38 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.61 Total: -84.10 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.52 Total: -12.33 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.72 1.81 -57.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227785196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.451 kcal (2) G-P(sol) polarization free energy of solvation -59.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds