Wall clock time and date at job start Sun Mar 29 2020 23:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 H 1.08995 * 109.47359 * 53.87208 * 3 2 1 5 5 C 1.50701 * 109.47299 * 173.87336 * 3 2 1 6 6 H 1.07999 * 120.00427 * 120.00038 * 5 3 2 7 7 C 1.37882 * 119.99918 * 300.00157 * 5 3 2 8 8 N 1.31515 * 119.99562 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99997 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46900 * 120.00260 * 9 7 5 12 12 H 1.48505 * 109.46956 * 239.99664 * 9 7 5 13 13 N 1.46906 * 109.47089 * 293.87124 * 3 2 1 14 14 C 1.39779 * 111.00101 * 312.18201 * 13 3 2 15 15 C 1.54431 * 111.70240 * 189.17590 * 14 13 3 16 16 C 1.50812 * 109.00284 * 282.49587 * 15 14 13 17 17 C 1.54172 * 112.54245 * 93.10434 * 16 15 14 18 18 C 1.53000 * 108.91235 * 79.08445 * 17 16 15 19 19 O 1.42902 * 108.98086 * 197.83681 * 17 16 15 20 20 C 1.53818 * 111.97274 * 318.48301 * 17 16 15 21 21 C 1.47630 * 110.99618 * 81.08213 * 13 3 2 22 22 H 1.09000 * 109.47633 * 312.80102 * 1 2 3 23 23 H 1.09004 * 109.47250 * 72.80363 * 1 2 3 24 24 H 1.09000 * 109.47223 * 192.80047 * 1 2 3 25 25 H 1.08999 * 109.47606 * 240.00156 * 2 1 3 26 26 H 1.09004 * 109.47406 * 120.00010 * 2 1 3 27 27 H 0.97004 * 119.99621 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.02052 * 309.72437 * 14 13 3 29 29 H 1.09000 * 109.02200 * 68.61939 * 14 13 3 30 30 H 1.08992 * 109.54379 * 42.43074 * 15 14 13 31 31 H 1.09000 * 109.54145 * 162.70372 * 15 14 13 32 32 H 1.08996 * 108.89252 * 332.31824 * 16 15 14 33 33 H 1.08997 * 108.88748 * 213.89451 * 16 15 14 34 34 H 1.09003 * 109.46931 * 297.57703 * 18 17 16 35 35 H 1.09000 * 109.47809 * 57.57661 * 18 17 16 36 36 H 1.08999 * 109.47214 * 177.58362 * 18 17 16 37 37 H 0.96700 * 114.00413 * 302.46322 * 19 17 16 38 38 H 1.09002 * 109.04640 * 198.49249 * 20 17 16 39 39 H 1.08999 * 109.04559 * 79.59980 * 20 17 16 40 40 H 1.08995 * 109.74465 * 269.95591 * 21 13 3 41 41 H 1.09000 * 109.74892 * 30.64128 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5898 1.9870 0.8300 5 6 3.5393 1.4452 0.1516 6 1 4.1589 1.8848 -0.6160 7 6 4.1201 0.8866 1.2704 8 7 3.3655 0.3518 2.2054 9 14 5.9786 0.8893 1.4581 10 1 6.5944 1.5457 0.2769 11 1 6.3508 1.6330 2.6885 12 1 6.4681 -0.5092 1.5579 13 7 1.6747 2.0910 -1.2666 14 6 1.9971 1.2779 -2.3569 15 6 1.8335 2.0281 -3.6968 16 6 0.3679 2.0958 -4.0459 17 6 -0.2998 3.3919 -3.5446 18 6 0.0464 4.5316 -4.5049 19 8 -1.7171 3.2098 -3.5321 20 6 0.1686 3.7703 -2.1292 21 6 0.2750 2.5593 -1.2367 22 1 -0.3634 0.6982 0.7540 23 1 -0.3634 0.3038 -0.9818 24 1 -0.3634 -1.0021 0.2277 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7741 -0.0415 2.9924 28 1 3.0308 0.9462 -2.2593 29 1 1.3429 0.4060 -2.3555 30 1 2.2338 3.0373 -3.6009 31 1 2.3700 1.4944 -4.4813 32 1 -0.1412 1.2418 -3.5992 33 1 0.2602 2.0403 -5.1291 34 1 1.1246 4.6917 -4.5049 35 1 -0.2822 4.2716 -5.5111 36 1 -0.4562 5.4435 -4.1827 37 1 -2.0904 2.9685 -4.3909 38 1 -0.5439 4.4713 -1.6943 39 1 1.1445 4.2514 -2.1942 40 1 -0.3844 1.7726 -1.6033 41 1 -0.0022 2.8268 -0.2171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230352683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:47 Heat of formation + Delta-G solvation = -52.079654 kcal Electronic energy + Delta-G solvation = -19186.283091 eV Core-core repulsion = 16486.917923 eV Total energy + Delta-G solvation = -2699.365169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63299 -37.21839 -34.02699 -32.24583 -31.50183 -30.67108 -28.60138 -26.54003 -25.07327 -23.29591 -22.57091 -20.64179 -19.23803 -18.82247 -16.60923 -16.17700 -15.62521 -15.09241 -14.55084 -14.33345 -13.76207 -13.44522 -13.11571 -12.85298 -12.58699 -12.37974 -12.07223 -11.78470 -11.58861 -11.48243 -11.22968 -11.01183 -10.84054 -10.66483 -10.58330 -10.42345 -10.20028 -10.01189 -9.92625 -9.57195 -9.53595 -9.39164 -8.82610 -8.30198 -6.87433 -5.96343 -3.99877 3.32016 3.40141 3.44631 4.40660 4.45132 4.80542 4.99747 5.10068 5.22985 5.33799 5.46806 5.54965 5.68731 5.87210 5.95486 6.00115 6.06132 6.09729 6.19547 6.24238 6.28338 6.36713 6.39937 6.45055 6.55746 6.63522 6.75635 6.84018 6.88727 6.97947 7.10846 7.33336 7.61638 7.80762 7.84180 7.92455 8.35858 8.58841 8.76060 9.08586 9.65141 11.09825 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.007043 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.598217 B = 3974.669463 C = 4325.775701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 C 0.223 3.777 4 H 0.037 0.963 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.547 5.547 14 C 0.084 3.916 15 C -0.119 4.119 16 C -0.141 4.141 17 C 0.130 3.870 18 C -0.176 4.176 19 O -0.563 6.563 20 C -0.100 4.100 21 C 0.062 3.938 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.030 0.970 25 H 0.037 0.963 26 H 0.097 0.903 27 H 0.259 0.741 28 H 0.077 0.923 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.367 0.633 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 3.716 -11.407 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C 0.117 3.883 4 H 0.055 0.945 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.271 5.271 14 C -0.047 4.047 15 C -0.157 4.157 16 C -0.179 4.179 17 C 0.090 3.910 18 C -0.233 4.233 19 O -0.368 6.368 20 C -0.138 4.138 21 C -0.065 4.065 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.213 0.787 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.130 4.175 -10.655 12.982 hybrid contribution 0.421 -0.949 -0.400 1.112 sum -5.709 3.226 -11.055 12.854 Atomic orbital electron populations 1.22102 0.99466 0.99452 0.99912 1.22235 0.91776 1.02441 1.02826 1.19346 0.95422 0.88553 0.84990 0.94536 1.21230 0.91240 1.36331 1.04668 0.91973 1.24938 0.97986 0.95586 0.95893 1.69895 1.34507 1.39566 1.09434 0.86508 0.85847 0.77459 0.77980 1.19803 1.21160 1.21274 1.59101 1.18469 1.44929 1.04586 1.20848 1.01325 0.93035 0.89444 1.21535 0.94405 1.01928 0.97860 1.22126 0.97825 0.98214 0.99691 1.21792 0.79898 0.93005 0.96273 1.22538 1.02589 0.99363 0.98841 1.86616 1.21587 1.92409 1.36194 1.21475 1.01314 0.99021 0.92030 1.21908 0.90108 0.95811 0.98661 0.93695 0.94017 0.95073 0.94416 0.88487 0.93146 0.90466 0.97020 0.91043 0.92374 0.91585 0.93031 0.91418 0.93029 0.92208 0.78729 0.92084 0.89508 0.93885 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.57 37.15 0.32 -2.79 16 2 C -0.15 -3.63 4.75 -26.73 -0.13 -3.75 16 3 C 0.22 5.48 1.90 -68.86 -0.13 5.35 16 4 H 0.04 1.00 7.42 -51.93 -0.39 0.62 16 5 C -0.50 -13.41 7.85 -34.44 -0.27 -13.68 16 6 H 0.06 1.70 7.50 -52.49 -0.39 1.30 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -25.34 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.55 -11.42 3.82 -233.38 -0.89 -12.31 16 14 C 0.08 1.61 3.83 -6.74 -0.03 1.58 16 15 C -0.12 -1.83 5.60 -27.08 -0.15 -1.98 16 16 C -0.14 -1.93 4.31 -27.22 -0.12 -2.05 16 17 C 0.13 1.78 0.82 -89.58 -0.07 1.70 16 18 C -0.18 -2.01 8.50 37.16 0.32 -1.69 16 19 O -0.56 -7.61 12.93 -35.23 -0.46 -8.06 16 20 C -0.10 -1.61 4.42 -27.40 -0.12 -1.73 16 21 C 0.06 1.16 3.87 -4.52 -0.02 1.15 16 22 H 0.04 0.92 7.90 -51.93 -0.41 0.51 16 23 H 0.04 0.80 4.82 -51.93 -0.25 0.55 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.88 6.17 -51.93 -0.32 0.56 16 26 H 0.10 2.60 5.93 -51.93 -0.31 2.29 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.08 1.64 6.88 -51.92 -0.36 1.29 16 29 H 0.01 0.24 5.20 -51.93 -0.27 -0.03 16 30 H 0.07 1.12 6.34 -51.93 -0.33 0.79 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.01 6.57 -51.93 -0.34 0.66 16 33 H 0.05 0.60 7.93 -51.93 -0.41 0.19 16 34 H 0.07 0.78 7.39 -51.93 -0.38 0.39 16 35 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.37 3.44 9.02 45.56 0.41 3.85 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.44 7.07 -51.93 -0.37 1.07 16 40 H 0.04 0.81 4.21 -51.93 -0.22 0.59 16 41 H 0.06 1.28 7.32 -51.93 -0.38 0.90 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -28.29 295.22 -7.75 -36.04 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.96 Total: 4.76 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.50 Total: -16.44 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.27 Total: -37.03 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.46 Total: -8.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.29 -7.75 -36.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.041 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds