Wall clock time and date at job start Sun Mar 29 2020 23:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 H 1.08995 * 109.47359 * 53.87208 * 3 2 1 5 5 C 1.50701 * 109.47299 * 173.87336 * 3 2 1 6 6 H 1.07999 * 120.00427 * 120.00038 * 5 3 2 7 7 C 1.37882 * 119.99918 * 300.00157 * 5 3 2 8 8 N 1.31515 * 119.99562 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99997 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47028 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46900 * 120.00260 * 9 7 5 12 12 H 1.48505 * 109.46956 * 239.99664 * 9 7 5 13 13 N 1.46906 * 109.47089 * 293.87124 * 3 2 1 14 14 C 1.39779 * 111.00101 * 312.18201 * 13 3 2 15 15 C 1.54431 * 111.70240 * 189.17590 * 14 13 3 16 16 C 1.50812 * 109.00284 * 282.49587 * 15 14 13 17 17 C 1.54172 * 112.54245 * 93.10434 * 16 15 14 18 18 C 1.53000 * 108.91235 * 79.08445 * 17 16 15 19 19 O 1.42902 * 108.98086 * 197.83681 * 17 16 15 20 20 C 1.53818 * 111.97274 * 318.48301 * 17 16 15 21 21 C 1.47630 * 110.99618 * 81.08213 * 13 3 2 22 22 H 1.09000 * 109.47633 * 312.80102 * 1 2 3 23 23 H 1.09004 * 109.47250 * 72.80363 * 1 2 3 24 24 H 1.09000 * 109.47223 * 192.80047 * 1 2 3 25 25 H 1.08999 * 109.47606 * 240.00156 * 2 1 3 26 26 H 1.09004 * 109.47406 * 120.00010 * 2 1 3 27 27 H 0.97004 * 119.99621 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.02052 * 309.72437 * 14 13 3 29 29 H 1.09000 * 109.02200 * 68.61939 * 14 13 3 30 30 H 1.08992 * 109.54379 * 42.43074 * 15 14 13 31 31 H 1.09000 * 109.54145 * 162.70372 * 15 14 13 32 32 H 1.08996 * 108.89252 * 332.31824 * 16 15 14 33 33 H 1.08997 * 108.88748 * 213.89451 * 16 15 14 34 34 H 1.09003 * 109.46931 * 297.57703 * 18 17 16 35 35 H 1.09000 * 109.47809 * 57.57661 * 18 17 16 36 36 H 1.08999 * 109.47214 * 177.58362 * 18 17 16 37 37 H 0.96700 * 114.00413 * 302.46322 * 19 17 16 38 38 H 1.09002 * 109.04640 * 198.49249 * 20 17 16 39 39 H 1.08999 * 109.04559 * 79.59980 * 20 17 16 40 40 H 1.08995 * 109.74465 * 269.95591 * 21 13 3 41 41 H 1.09000 * 109.74892 * 30.64128 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5898 1.9870 0.8300 5 6 3.5393 1.4452 0.1516 6 1 4.1589 1.8848 -0.6160 7 6 4.1201 0.8866 1.2704 8 7 3.3655 0.3518 2.2054 9 14 5.9786 0.8893 1.4581 10 1 6.5944 1.5457 0.2769 11 1 6.3508 1.6330 2.6885 12 1 6.4681 -0.5092 1.5579 13 7 1.6747 2.0910 -1.2666 14 6 1.9971 1.2779 -2.3569 15 6 1.8335 2.0281 -3.6968 16 6 0.3679 2.0958 -4.0459 17 6 -0.2998 3.3919 -3.5446 18 6 0.0464 4.5316 -4.5049 19 8 -1.7171 3.2098 -3.5321 20 6 0.1686 3.7703 -2.1292 21 6 0.2750 2.5593 -1.2367 22 1 -0.3634 0.6982 0.7540 23 1 -0.3634 0.3038 -0.9818 24 1 -0.3634 -1.0021 0.2277 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7741 -0.0415 2.9924 28 1 3.0308 0.9462 -2.2593 29 1 1.3429 0.4060 -2.3555 30 1 2.2338 3.0373 -3.6009 31 1 2.3700 1.4944 -4.4813 32 1 -0.1412 1.2418 -3.5992 33 1 0.2602 2.0403 -5.1291 34 1 1.1246 4.6917 -4.5049 35 1 -0.2822 4.2716 -5.5111 36 1 -0.4562 5.4435 -4.1827 37 1 -2.0904 2.9685 -4.3909 38 1 -0.5439 4.4713 -1.6943 39 1 1.1445 4.2514 -2.1942 40 1 -0.3844 1.7726 -1.6033 41 1 -0.0022 2.8268 -0.2171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230352683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:47 Heat of formation + Delta-G solvation = -71.458478 kcal Electronic energy + Delta-G solvation = -19187.123420 eV Core-core repulsion = 16486.917923 eV Total energy + Delta-G solvation = -2700.205498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04330 -38.59292 -35.56531 -34.01668 -32.83062 -32.32950 -30.01911 -28.20591 -26.54057 -24.95515 -24.03665 -22.27946 -20.80423 -20.18820 -18.28784 -17.65724 -17.12345 -16.64347 -16.15719 -15.98019 -15.18294 -14.78183 -14.64154 -14.40490 -13.89858 -13.67427 -13.48467 -13.32922 -13.15581 -12.90404 -12.75283 -12.58594 -12.52053 -12.37314 -12.02602 -11.97074 -11.93851 -11.72162 -11.31365 -11.21691 -11.05511 -10.78376 -10.61413 -10.39937 -8.58538 -8.06752 -6.17644 1.41340 1.43441 1.55046 2.44619 3.20575 3.36849 3.48704 3.83153 3.90098 4.04299 4.24501 4.34838 4.36115 4.46690 4.61239 4.66154 4.67368 4.73806 4.81007 4.85314 4.94785 5.02811 5.10067 5.13777 5.19053 5.23039 5.26382 5.28742 5.36055 5.44835 5.50712 5.60686 5.64953 5.79618 5.90087 6.35003 6.69408 6.94262 6.99793 7.09927 7.51878 8.98186 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.007043 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.598217 B = 3974.669463 C = 4325.775701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.228 3.772 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.550 5.550 14 C 0.084 3.916 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.135 3.865 18 C -0.170 4.170 19 O -0.577 6.577 20 C -0.099 4.099 21 C 0.069 3.931 22 H 0.037 0.963 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.259 0.741 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.387 0.613 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 4.160 -13.665 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 C 0.121 3.879 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.273 5.273 14 C -0.046 4.046 15 C -0.147 4.147 16 C -0.174 4.174 17 C 0.094 3.906 18 C -0.227 4.227 19 O -0.385 6.385 20 C -0.137 4.137 21 C -0.058 4.058 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.465 4.624 -12.943 15.189 hybrid contribution 0.480 -1.089 0.313 1.231 sum -5.986 3.535 -12.631 14.417 Atomic orbital electron populations 1.21953 0.96919 1.00299 1.00514 1.22038 0.94007 1.01336 1.01051 1.19089 0.94134 0.88872 0.85824 0.98190 1.21488 0.92586 1.36248 1.04596 0.92748 1.25683 1.02240 0.95290 0.95636 1.70029 1.36165 1.40136 1.09803 0.85526 0.80740 0.77529 0.77931 1.19242 1.20879 1.20782 1.59059 1.20050 1.44716 1.03514 1.20863 0.99430 0.93343 0.90984 1.21452 0.96203 1.01373 0.95687 1.22071 0.96049 0.97603 1.01640 1.21636 0.80179 0.93904 0.94838 1.22463 1.02591 0.98288 0.99377 1.86567 1.21258 1.92576 1.38136 1.21403 1.01269 0.97496 0.93571 1.21867 0.88588 0.96970 0.98402 0.94408 0.92608 0.93476 0.94524 0.91706 0.93143 0.93163 0.97642 0.91187 0.90299 0.93067 0.89745 0.91511 0.90603 0.92159 0.76402 0.91832 0.90202 0.93768 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.57 71.98 0.62 -5.11 16 2 C -0.14 -7.04 4.75 30.59 0.15 -6.89 16 3 C 0.23 11.62 1.90 44.17 0.08 11.71 16 4 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 5 C -0.51 -28.41 7.85 25.60 0.20 -28.21 16 6 H 0.05 3.04 7.50 -2.91 -0.02 3.02 16 7 C 0.01 0.53 5.29 84.66 0.45 0.98 16 8 N -0.92 -53.66 11.29 21.45 0.24 -53.42 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.55 -23.31 3.82 -892.28 -3.41 -26.72 16 14 C 0.08 3.20 3.83 88.07 0.34 3.54 16 15 C -0.11 -3.11 5.60 30.37 0.17 -2.94 16 16 C -0.14 -3.30 4.31 30.28 0.13 -3.16 16 17 C 0.13 3.29 0.82 -10.12 -0.01 3.28 16 18 C -0.17 -3.26 8.50 71.98 0.61 -2.65 16 19 O -0.58 -13.83 12.93 -148.98 -1.93 -15.76 16 20 C -0.10 -3.08 4.42 30.16 0.13 -2.95 16 21 C 0.07 2.57 3.87 85.45 0.33 2.90 16 22 H 0.04 1.57 7.90 -2.39 -0.02 1.55 16 23 H 0.06 2.11 4.82 -2.38 -0.01 2.10 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.75 6.17 -2.39 -0.01 1.73 16 26 H 0.06 3.59 5.93 -2.39 -0.01 3.58 16 27 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.05 2.17 6.88 -2.38 -0.02 2.15 16 29 H 0.01 0.23 5.20 -2.39 -0.01 0.21 16 30 H 0.07 2.04 6.34 -2.39 -0.02 2.03 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.42 6.57 -2.39 -0.02 1.40 16 33 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 34 H 0.07 1.31 7.39 -2.39 -0.02 1.29 16 35 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.39 5.77 9.02 -74.06 -0.67 5.11 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 2.58 7.07 -2.39 -0.02 2.57 16 40 H 0.04 1.64 4.21 -2.39 -0.01 1.63 16 41 H 0.05 1.85 7.32 -2.39 -0.02 1.83 16 Total: -1.00 -62.08 295.22 0.48 -61.60 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.35 Total: 17.48 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.20 Total: -29.51 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.17 Total: -80.14 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.93 Total: -15.76 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.08 0.48 -61.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.857 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds