Wall clock time and date at job start Sun Mar 29 2020 23:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 H 1.08994 * 109.46964 * 302.81491 * 3 2 1 5 5 C 1.50699 * 109.46625 * 182.81511 * 3 2 1 6 6 H 1.07998 * 120.00585 * 302.84068 * 5 3 2 7 7 C 1.37884 * 119.99498 * 122.84615 * 5 3 2 8 8 N 1.31512 * 119.99554 * 172.01276 * 7 5 3 9 9 Si 1.86790 * 120.00377 * 352.00861 * 7 5 3 10 10 H 1.48504 * 109.47388 * 84.75238 * 9 7 5 11 11 H 1.48496 * 109.47355 * 204.75999 * 9 7 5 12 12 H 1.48506 * 109.46973 * 324.75854 * 9 7 5 13 13 N 1.46901 * 109.47120 * 62.81752 * 3 2 1 14 14 C 1.47999 * 110.99873 * 69.44160 * 13 3 2 15 15 C 1.50444 * 112.82245 * 84.84003 * 14 13 3 16 16 C 1.54312 * 108.50096 * 93.72530 * 15 14 13 17 17 C 1.45874 * 112.18620 * 281.46131 * 16 15 14 18 18 C 1.52996 * 108.94099 * 181.72590 * 17 16 15 19 19 O 1.42901 * 108.94046 * 300.42418 * 17 16 15 20 20 C 1.54312 * 112.18587 * 61.12161 * 17 16 15 21 21 C 1.48005 * 110.99736 * 198.16387 * 13 3 2 22 22 H 1.08996 * 109.47003 * 300.00324 * 1 2 3 23 23 H 1.09010 * 109.46841 * 60.00136 * 1 2 3 24 24 H 1.08995 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47003 * 239.99676 * 2 1 3 26 26 H 1.08998 * 109.46450 * 119.99991 * 2 1 3 27 27 H 0.97006 * 119.99865 * 179.97438 * 8 7 5 28 28 H 1.08997 * 108.81817 * 323.97273 * 14 13 3 29 29 H 1.09002 * 108.72084 * 205.63447 * 14 13 3 30 30 H 1.08994 * 109.63502 * 334.02145 * 15 14 13 31 31 H 1.08998 * 109.79621 * 213.52175 * 15 14 13 32 32 H 1.09002 * 108.93819 * 160.76230 * 16 15 14 33 33 H 1.09002 * 108.93454 * 42.15934 * 16 15 14 34 34 H 1.09003 * 109.47634 * 178.70999 * 18 17 16 35 35 H 1.09009 * 109.47013 * 298.70874 * 18 17 16 36 36 H 1.09001 * 109.47213 * 58.70399 * 18 17 16 37 37 H 0.96696 * 113.99997 * 299.99678 * 19 17 16 38 38 H 1.08995 * 109.63300 * 41.16186 * 20 17 16 39 39 H 1.09000 * 109.63391 * 161.76527 * 20 17 16 40 40 H 1.08994 * 108.80986 * 312.20799 * 21 13 3 41 41 H 1.09002 * 108.80784 * 70.47907 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6361 1.9707 -0.8636 5 6 3.5454 1.4430 -0.0698 6 1 4.1211 0.9232 0.6817 7 6 4.1878 2.1072 -1.0931 8 7 5.4958 2.2423 -1.0703 9 14 3.2005 2.8152 -2.5119 10 1 2.6945 4.1610 -2.1401 11 1 4.0681 2.9266 -3.7119 12 1 2.0535 1.9208 -2.8117 13 7 1.6067 2.1151 1.2320 14 6 2.3132 1.5676 2.4117 15 6 3.6527 2.2129 2.6411 16 6 3.4713 3.3767 3.6380 17 6 2.9177 4.5665 3.0010 18 6 2.8098 5.6825 4.0419 19 8 3.8005 4.9882 1.9593 20 6 1.5203 4.3086 2.3993 21 6 1.6901 3.5860 1.0907 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.9478 2.7093 -1.7904 28 1 2.4586 0.4969 2.2688 29 1 1.6926 1.7228 3.2943 30 1 4.0410 2.5962 1.6975 31 1 4.3485 1.4824 3.0537 32 1 4.4401 3.6257 4.0712 33 1 2.8004 3.0578 4.4357 34 1 2.4182 6.5835 3.5696 35 1 2.1378 5.3700 4.8414 36 1 3.7964 5.8892 4.4567 37 1 4.6909 5.2102 2.2642 38 1 0.9347 3.6945 3.0834 39 1 1.0134 5.2586 2.2300 40 1 2.6620 3.8441 0.6702 41 1 0.9125 3.9176 0.4026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230352688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:49 Heat of formation + Delta-G solvation = -52.634378 kcal Electronic energy + Delta-G solvation = -19686.456414 eV Core-core repulsion = 16987.067191 eV Total energy + Delta-G solvation = -2699.389224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.55840 -36.67761 -33.40868 -32.05642 -31.51933 -31.30671 -28.28224 -26.68791 -25.05772 -23.21331 -22.16420 -20.16418 -19.59362 -18.19502 -17.02946 -15.86389 -15.59816 -14.89983 -14.67452 -14.25854 -13.38686 -13.06265 -12.93481 -12.61593 -12.49985 -12.15204 -11.96983 -11.83902 -11.69553 -11.43169 -11.26475 -11.08106 -10.83673 -10.64283 -10.50182 -10.07534 -9.98146 -9.79298 -9.70335 -9.62024 -9.48271 -9.22176 -8.85351 -8.39606 -6.84473 -6.04900 -4.01018 3.33958 3.40894 3.43126 4.46390 4.64844 4.96068 5.16970 5.19214 5.40476 5.51212 5.68997 5.77698 5.88597 5.99581 6.02698 6.09887 6.15991 6.17496 6.23489 6.32818 6.41862 6.45929 6.51545 6.65545 6.75731 6.79355 6.81108 6.84549 7.00406 7.08427 7.27950 7.32616 7.34870 7.68977 7.83338 8.20390 8.31367 8.44377 8.64066 9.00080 9.61022 11.07629 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.011631 C = 0.009397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.431205 B = 2406.880352 C = 2979.008140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C 0.173 3.827 4 H 0.040 0.960 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.894 5.894 9 Si 0.868 3.132 10 H -0.274 1.274 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.544 5.544 14 C 0.082 3.918 15 C -0.154 4.154 16 C -0.141 4.141 17 C 0.132 3.868 18 C -0.178 4.178 19 O -0.546 6.546 20 C -0.097 4.097 21 C 0.055 3.945 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.128 0.872 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.366 0.634 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 3.486 8.094 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C 0.066 3.934 4 H 0.058 0.942 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.532 5.532 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.193 1.193 13 N -0.269 5.269 14 C -0.046 4.046 15 C -0.192 4.192 16 C -0.179 4.179 17 C 0.092 3.908 18 C -0.236 4.236 19 O -0.351 6.351 20 C -0.134 4.134 21 C -0.072 4.072 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.213 0.787 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.779 3.362 7.702 10.797 hybrid contribution 1.020 0.744 -0.464 1.346 sum -5.759 4.107 7.237 10.120 Atomic orbital electron populations 1.21744 0.97869 0.98988 1.01434 1.21600 0.93459 0.98731 1.00427 1.19723 0.94286 0.90818 0.88556 0.94231 1.21578 0.90343 1.33260 1.11791 0.90293 1.25019 0.94598 0.95067 0.97528 1.69912 1.08032 1.42367 1.32872 0.87009 0.80361 0.80198 0.82812 1.19981 1.21907 1.19331 1.62460 1.56368 1.03544 1.04521 1.21455 0.92124 0.98633 0.92361 1.22233 0.98814 0.95979 1.02190 1.21280 0.99989 0.97525 0.99090 1.19959 0.91627 0.92329 0.86897 1.22625 1.01690 0.99711 0.99587 1.86678 1.24488 1.88772 1.35190 1.21379 0.93560 0.99852 0.98656 1.21479 1.02188 0.88107 0.95466 0.92133 0.94285 0.95071 0.93032 0.93129 0.92876 0.92266 0.94227 0.85410 0.93603 0.93178 0.92580 0.92276 0.92193 0.92942 0.78704 0.90760 0.92045 0.90728 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.78 37.16 0.36 -2.20 16 2 C -0.10 -2.16 5.36 -26.73 -0.14 -2.31 16 3 C 0.17 4.00 1.66 -68.86 -0.11 3.89 16 4 H 0.04 0.98 4.58 -51.93 -0.24 0.74 16 5 C -0.53 -14.01 5.37 -34.44 -0.18 -14.20 16 6 H 0.08 2.26 6.49 -52.49 -0.34 1.92 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 9 Si 0.87 21.77 26.97 -169.99 -4.58 17.18 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.55 6.77 56.52 0.38 -6.17 16 13 N -0.54 -11.36 3.99 -229.31 -0.91 -12.27 16 14 C 0.08 1.61 4.56 -4.49 -0.02 1.59 16 15 C -0.15 -3.06 4.29 -27.32 -0.12 -3.17 16 16 C -0.14 -2.28 4.10 -29.42 -0.12 -2.41 16 17 C 0.13 2.12 0.87 -93.31 -0.08 2.03 16 18 C -0.18 -2.27 8.57 37.16 0.32 -1.95 16 19 O -0.55 -10.04 10.12 -35.23 -0.36 -10.39 16 20 C -0.10 -1.64 4.86 -27.32 -0.13 -1.77 16 21 C 0.06 1.14 4.76 -4.49 -0.02 1.12 16 22 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 23 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 1.03 6.32 -51.93 -0.33 0.71 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.06 1.20 5.89 -51.93 -0.31 0.90 16 29 H 0.04 0.70 6.58 -51.93 -0.34 0.36 16 30 H 0.13 3.10 3.93 -51.93 -0.20 2.89 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 33 H 0.06 0.83 7.52 -51.93 -0.39 0.44 16 34 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.37 5.57 8.99 45.56 0.41 5.98 16 38 H 0.07 1.19 7.07 -51.93 -0.37 0.83 16 39 H 0.06 0.95 7.98 -51.93 -0.41 0.54 16 40 H 0.07 1.80 4.81 -51.93 -0.25 1.55 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -28.65 295.04 -7.11 -35.76 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.12 Total: 8.11 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.35 Total: -17.22 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.14 Total: -37.88 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.36 Total: -10.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.58 Total: 17.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.65 -7.11 -35.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.876 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds