Wall clock time and date at job start Sun Mar 29 2020 23:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 H 1.08994 * 109.46964 * 302.81491 * 3 2 1 5 5 C 1.50699 * 109.46625 * 182.81511 * 3 2 1 6 6 H 1.07998 * 120.00585 * 302.84068 * 5 3 2 7 7 C 1.37884 * 119.99498 * 122.84615 * 5 3 2 8 8 N 1.31512 * 119.99554 * 172.01276 * 7 5 3 9 9 Si 1.86790 * 120.00377 * 352.00861 * 7 5 3 10 10 H 1.48504 * 109.47388 * 84.75238 * 9 7 5 11 11 H 1.48496 * 109.47355 * 204.75999 * 9 7 5 12 12 H 1.48506 * 109.46973 * 324.75854 * 9 7 5 13 13 N 1.46901 * 109.47120 * 62.81752 * 3 2 1 14 14 C 1.47999 * 110.99873 * 69.44160 * 13 3 2 15 15 C 1.50444 * 112.82245 * 84.84003 * 14 13 3 16 16 C 1.54312 * 108.50096 * 93.72530 * 15 14 13 17 17 C 1.45874 * 112.18620 * 281.46131 * 16 15 14 18 18 C 1.52996 * 108.94099 * 181.72590 * 17 16 15 19 19 O 1.42901 * 108.94046 * 300.42418 * 17 16 15 20 20 C 1.54312 * 112.18587 * 61.12161 * 17 16 15 21 21 C 1.48005 * 110.99736 * 198.16387 * 13 3 2 22 22 H 1.08996 * 109.47003 * 300.00324 * 1 2 3 23 23 H 1.09010 * 109.46841 * 60.00136 * 1 2 3 24 24 H 1.08995 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47003 * 239.99676 * 2 1 3 26 26 H 1.08998 * 109.46450 * 119.99991 * 2 1 3 27 27 H 0.97006 * 119.99865 * 179.97438 * 8 7 5 28 28 H 1.08997 * 108.81817 * 323.97273 * 14 13 3 29 29 H 1.09002 * 108.72084 * 205.63447 * 14 13 3 30 30 H 1.08994 * 109.63502 * 334.02145 * 15 14 13 31 31 H 1.08998 * 109.79621 * 213.52175 * 15 14 13 32 32 H 1.09002 * 108.93819 * 160.76230 * 16 15 14 33 33 H 1.09002 * 108.93454 * 42.15934 * 16 15 14 34 34 H 1.09003 * 109.47634 * 178.70999 * 18 17 16 35 35 H 1.09009 * 109.47013 * 298.70874 * 18 17 16 36 36 H 1.09001 * 109.47213 * 58.70399 * 18 17 16 37 37 H 0.96696 * 113.99997 * 299.99678 * 19 17 16 38 38 H 1.08995 * 109.63300 * 41.16186 * 20 17 16 39 39 H 1.09000 * 109.63391 * 161.76527 * 20 17 16 40 40 H 1.08994 * 108.80986 * 312.20799 * 21 13 3 41 41 H 1.09002 * 108.80784 * 70.47907 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6361 1.9707 -0.8636 5 6 3.5454 1.4430 -0.0698 6 1 4.1211 0.9232 0.6817 7 6 4.1878 2.1072 -1.0931 8 7 5.4958 2.2423 -1.0703 9 14 3.2005 2.8152 -2.5119 10 1 2.6945 4.1610 -2.1401 11 1 4.0681 2.9266 -3.7119 12 1 2.0535 1.9208 -2.8117 13 7 1.6067 2.1151 1.2320 14 6 2.3132 1.5676 2.4117 15 6 3.6527 2.2129 2.6411 16 6 3.4713 3.3767 3.6380 17 6 2.9177 4.5665 3.0010 18 6 2.8098 5.6825 4.0419 19 8 3.8005 4.9882 1.9593 20 6 1.5203 4.3086 2.3993 21 6 1.6901 3.5860 1.0907 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.9478 2.7093 -1.7904 28 1 2.4586 0.4969 2.2688 29 1 1.6926 1.7228 3.2943 30 1 4.0410 2.5962 1.6975 31 1 4.3485 1.4824 3.0537 32 1 4.4401 3.6257 4.0712 33 1 2.8004 3.0578 4.4357 34 1 2.4182 6.5835 3.5696 35 1 2.1378 5.3700 4.8414 36 1 3.7964 5.8892 4.4567 37 1 4.6909 5.2102 2.2642 38 1 0.9347 3.6945 3.0834 39 1 1.0134 5.2586 2.2300 40 1 2.6620 3.8441 0.6702 41 1 0.9125 3.9176 0.4026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230352688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:49 Heat of formation + Delta-G solvation = -72.857453 kcal Electronic energy + Delta-G solvation = -19687.333353 eV Core-core repulsion = 16987.067191 eV Total energy + Delta-G solvation = -2700.266162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00574 -38.28159 -35.00940 -34.08049 -33.05523 -32.70444 -29.77471 -28.37571 -26.60277 -24.79526 -23.78540 -21.78765 -20.99480 -19.90564 -19.08500 -17.36712 -17.04177 -16.39721 -16.34847 -16.00544 -14.90442 -14.76719 -14.44643 -14.20856 -14.07569 -13.68964 -13.56443 -13.39848 -13.11593 -12.95754 -12.69941 -12.68528 -12.50675 -12.19321 -12.02436 -11.80289 -11.67103 -11.49868 -11.44879 -11.26985 -10.96647 -10.77627 -10.55950 -10.48415 -8.61737 -8.22011 -6.17480 1.30746 1.33170 1.39715 2.36515 3.11106 3.39589 3.50712 3.90174 3.97253 4.18093 4.31821 4.39891 4.55606 4.60018 4.62275 4.75813 4.76624 4.78805 4.85980 4.90616 4.98707 5.07151 5.08029 5.18626 5.21687 5.26027 5.32163 5.40107 5.46083 5.52251 5.54480 5.63831 5.71610 5.76845 6.06518 6.30867 6.61086 6.77777 6.84891 7.02782 7.45738 8.93749 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.011631 C = 0.009397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.431205 B = 2406.880352 C = 2979.008140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.509 4.509 6 H 0.048 0.952 7 C 0.031 3.969 8 N -0.938 5.938 9 Si 0.917 3.083 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.255 1.255 13 N -0.534 5.534 14 C 0.084 3.916 15 C -0.151 4.151 16 C -0.133 4.133 17 C 0.127 3.873 18 C -0.168 4.168 19 O -0.575 6.575 20 C -0.094 4.094 21 C 0.056 3.944 22 H 0.063 0.937 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.258 0.742 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.375 0.625 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 3.945 9.712 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C 0.065 3.935 4 H 0.045 0.955 5 C -0.548 4.548 6 H 0.066 0.934 7 C -0.168 4.168 8 N -0.579 5.579 9 Si 0.744 3.256 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.180 1.180 13 N -0.258 5.258 14 C -0.044 4.044 15 C -0.190 4.190 16 C -0.171 4.171 17 C 0.087 3.913 18 C -0.225 4.225 19 O -0.382 6.382 20 C -0.132 4.132 21 C -0.072 4.072 22 H 0.082 0.918 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.223 0.777 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.031 3.814 9.332 13.535 hybrid contribution 1.745 0.557 -0.903 2.042 sum -7.286 4.371 8.429 11.968 Atomic orbital electron populations 1.21627 0.95021 1.00750 1.01556 1.21529 0.95954 0.96701 1.00007 1.19701 0.91889 0.92527 0.89377 0.95487 1.21716 0.92095 1.31049 1.09969 0.93413 1.25617 0.95197 0.96095 0.99879 1.70037 1.09544 1.44516 1.33772 0.86212 0.79475 0.79595 0.80314 1.20211 1.22058 1.17951 1.62478 1.55791 1.03774 1.03777 1.21514 0.92378 0.97773 0.92756 1.22024 0.98550 0.97222 1.01166 1.21210 1.01350 0.96062 0.98456 1.20111 0.90582 0.93461 0.87171 1.22489 1.03001 0.98202 0.98830 1.86659 1.25500 1.88998 1.37062 1.21405 0.94699 1.00290 0.96771 1.21491 0.99893 0.88082 0.97714 0.91758 0.94355 0.92525 0.94087 0.93046 0.93242 0.93461 0.91226 0.89981 0.94556 0.92128 0.90137 0.92086 0.90244 0.91770 0.77678 0.89134 0.90485 0.94523 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.78 71.98 0.70 -3.69 16 2 C -0.10 -4.21 5.36 30.60 0.16 -4.05 16 3 C 0.17 7.97 1.66 44.17 0.07 8.04 16 4 H 0.03 1.32 4.58 -2.39 -0.01 1.31 16 5 C -0.51 -27.65 5.37 25.60 0.14 -27.51 16 6 H 0.05 2.86 6.49 -2.91 -0.02 2.84 16 7 C 0.03 1.75 5.47 84.66 0.46 2.22 16 8 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 9 Si 0.92 45.81 26.97 68.60 1.85 47.66 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.26 -12.07 6.77 99.48 0.67 -11.39 16 13 N -0.53 -21.71 3.99 -879.39 -3.50 -25.21 16 14 C 0.08 3.16 4.56 85.26 0.39 3.55 16 15 C -0.15 -5.98 4.29 30.21 0.13 -5.85 16 16 C -0.13 -4.01 4.10 28.85 0.12 -3.89 16 17 C 0.13 3.76 0.87 -12.53 -0.01 3.75 16 18 C -0.17 -3.65 8.57 71.98 0.62 -3.03 16 19 O -0.57 -21.04 10.12 -148.98 -1.51 -22.54 16 20 C -0.09 -2.93 4.86 30.21 0.15 -2.78 16 21 C 0.06 2.26 4.76 85.26 0.41 2.67 16 22 H 0.06 2.09 7.69 -2.39 -0.02 2.07 16 23 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 2.06 6.32 -2.39 -0.02 2.05 16 27 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 28 H 0.05 1.89 5.89 -2.39 -0.01 1.87 16 29 H 0.07 2.23 6.58 -2.39 -0.02 2.22 16 30 H 0.08 4.10 3.93 -2.39 -0.01 4.10 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 33 H 0.08 2.05 7.52 -2.39 -0.02 2.04 16 34 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.38 11.49 8.99 -74.06 -0.67 10.82 16 38 H 0.09 2.53 7.07 -2.39 -0.02 2.52 16 39 H 0.08 2.16 7.98 -2.39 -0.02 2.14 16 40 H 0.04 1.80 4.81 -2.39 -0.01 1.78 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -63.73 295.04 0.78 -62.95 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.31 Total: 25.13 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 3.34 Total: -30.58 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -3.21 Total: -82.61 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.51 Total: -22.54 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.85 Total: 47.66 kcal Total: -63.73 0.78 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230352688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.911 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds