Wall clock time and date at job start Sun Mar 29 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47094 * 2 1 4 4 C 1.52997 * 109.47307 * 119.99974 * 2 1 3 5 5 H 1.08996 * 109.47142 * 298.14017 * 4 2 1 6 6 C 1.53004 * 109.47045 * 58.14184 * 4 2 1 7 7 C 1.53003 * 109.47236 * 183.10277 * 6 4 2 8 8 O 1.42898 * 109.46935 * 174.47798 * 7 6 4 9 9 N 1.46898 * 109.47148 * 178.13986 * 4 2 1 10 10 C 1.46899 * 111.00188 * 92.86123 * 9 4 2 11 11 C 1.53000 * 109.47558 * 86.90433 * 10 9 4 12 12 C 1.50699 * 115.54725 * 40.20222 * 11 10 9 13 13 H 1.08002 * 119.99958 * 265.23472 * 12 11 10 14 14 C 1.37871 * 120.00281 * 85.23539 * 12 11 10 15 15 N 1.31515 * 120.00277 * 180.16542 * 14 12 11 16 16 Si 1.86805 * 119.99701 * 0.17227 * 14 12 11 17 17 H 1.48492 * 109.47246 * 91.97370 * 16 14 12 18 18 H 1.48506 * 109.46715 * 211.97094 * 16 14 12 19 19 H 1.48504 * 109.46965 * 331.96941 * 16 14 12 20 20 C 1.53001 * 117.49982 * 254.49865 * 11 10 9 21 21 C 1.52996 * 117.49998 * 185.87607 * 11 10 9 22 22 H 1.08999 * 109.47470 * 299.99688 * 1 2 3 23 23 H 1.09006 * 109.47079 * 59.99835 * 1 2 3 24 24 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47470 * 240.00312 * 2 1 3 26 26 H 1.09000 * 109.47146 * 186.70647 * 3 2 1 27 27 H 1.09000 * 109.47473 * 306.70459 * 3 2 1 28 28 H 1.09003 * 109.47023 * 66.70736 * 3 2 1 29 29 H 1.08995 * 109.47112 * 63.09621 * 6 4 2 30 30 H 1.09004 * 109.46616 * 303.09894 * 6 4 2 31 31 H 1.08998 * 109.46585 * 294.47625 * 7 6 4 32 32 H 1.08999 * 109.47180 * 54.47127 * 7 6 4 33 33 H 0.96703 * 113.99824 * 179.97438 * 8 7 6 34 34 H 1.00910 * 110.99880 * 216.80817 * 9 4 2 35 35 H 1.09002 * 109.47210 * 206.90758 * 10 9 4 36 36 H 1.09008 * 109.46795 * 326.90286 * 10 9 4 37 37 H 0.97004 * 120.00174 * 179.97438 * 15 14 12 38 38 H 1.09001 * 117.49618 * 359.97438 * 20 11 10 39 39 H 1.08996 * 117.50204 * 145.01542 * 20 11 10 40 40 H 1.09007 * 117.49639 * 214.97705 * 21 11 10 41 41 H 1.08999 * 117.49942 * 359.97371 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7042 -0.1885 2.1389 6 6 1.4921 -2.1496 1.2728 7 6 1.9386 -2.8459 2.5600 8 8 1.3229 -4.1327 2.6436 9 7 3.5083 -0.7603 1.2269 10 6 4.0764 0.3851 1.9502 11 6 4.2000 0.0401 3.4356 12 6 4.6642 -1.3608 3.7410 13 1 3.9409 -2.1397 3.9323 14 6 6.0121 -1.6481 3.7762 15 7 6.4172 -2.8713 4.0395 16 14 7.2633 -0.2997 3.4501 17 1 7.6596 0.3292 4.7356 18 1 8.4611 -0.8840 2.7949 19 1 6.6637 0.7272 2.5606 20 6 3.1913 0.6753 4.3948 21 6 4.6444 1.1543 4.3852 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1233 1.4449 -0.1200 27 1 1.5820 1.9899 -0.8239 28 1 1.7779 1.9205 0.9439 29 1 1.8726 -2.6989 0.4117 30 1 0.4032 -2.1217 1.2338 31 1 3.0225 -2.9614 2.5533 32 1 1.6426 -2.2448 3.4197 33 1 1.5618 -4.6323 3.4364 34 1 3.8526 -1.6315 1.6019 35 1 5.0627 0.6162 1.5476 36 1 3.4237 1.2500 1.8311 37 1 7.3656 -3.0735 4.0639 38 1 2.4400 1.3395 3.9675 39 1 2.8632 0.0801 5.2468 40 1 5.2722 0.8741 5.2311 41 1 4.8491 2.1332 3.9516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231078709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:58 Heat of formation + Delta-G solvation = -41.796224 kcal Electronic energy + Delta-G solvation = -19025.190003 eV Core-core repulsion = 16326.270757 eV Total energy + Delta-G solvation = -2698.919246 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.64657 -36.61822 -35.84878 -32.54336 -32.18207 -30.60062 -26.75961 -26.25415 -24.98195 -23.30676 -21.66886 -20.97723 -19.35715 -19.06594 -16.92377 -16.28956 -15.32633 -14.90219 -14.68994 -14.30571 -14.23155 -13.58804 -13.25668 -12.98903 -12.75586 -12.48218 -12.40895 -11.95085 -11.71395 -11.59189 -11.14511 -11.02752 -10.85941 -10.63371 -10.48560 -10.43107 -10.23096 -10.15281 -9.82452 -9.65190 -9.30580 -9.04531 -8.67133 -8.41765 -7.43641 -6.19397 -4.24401 3.27797 3.37890 3.43169 4.38747 4.62631 4.84388 4.96658 5.15904 5.25296 5.35594 5.48438 5.65515 5.77508 5.80584 5.85286 5.97131 5.98871 6.04147 6.08655 6.11616 6.15562 6.22599 6.33544 6.34638 6.42574 6.46066 6.55269 6.61063 6.66956 6.71808 6.76965 6.92271 7.07225 7.10043 7.65586 7.97904 8.09001 8.34913 8.49170 8.80828 9.44840 10.90522 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.009803 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.674496 B = 2855.611427 C = 3560.144841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.142 4.142 4 C 0.097 3.903 5 H 0.048 0.952 6 C -0.122 4.122 7 C 0.065 3.935 8 O -0.585 6.585 9 N -0.680 5.680 10 C 0.082 3.918 11 C -0.027 4.027 12 C -0.497 4.497 13 H 0.082 0.918 14 C 0.083 3.917 15 N -0.893 5.893 16 Si 0.881 3.119 17 H -0.283 1.283 18 H -0.295 1.295 19 H -0.253 1.253 20 C -0.184 4.184 21 C -0.202 4.202 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.377 0.623 34 H 0.363 0.637 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 5.182 -4.805 10.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.014 4.014 5 H 0.066 0.934 6 C -0.160 4.160 7 C -0.012 4.012 8 O -0.390 6.390 9 N -0.315 5.315 10 C -0.047 4.047 11 C -0.029 4.029 12 C -0.534 4.534 13 H 0.100 0.900 14 C -0.121 4.121 15 N -0.529 5.529 16 Si 0.709 3.291 17 H -0.209 1.209 18 H -0.222 1.222 19 H -0.177 1.177 20 C -0.221 4.221 21 C -0.240 4.240 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.224 0.776 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.227 5.520 -5.981 11.573 hybrid contribution 0.923 0.346 1.606 1.885 sum -7.304 5.867 -4.374 10.340 Atomic orbital electron populations 1.21937 0.96176 1.01581 1.01056 1.21094 0.94004 0.96217 0.98936 1.21877 1.01985 0.95788 1.00273 1.21417 0.89854 0.93856 0.96249 0.93433 1.21771 1.00956 0.95531 0.97716 1.22546 0.98432 0.83104 0.97119 1.86331 1.73461 1.31097 1.48139 1.60926 1.04475 1.08061 1.58033 1.21972 0.98704 0.92410 0.91651 1.20368 0.98688 0.93846 0.90037 1.20307 0.92502 0.91607 1.48993 0.90031 1.24968 0.98474 0.95204 0.93419 1.69883 1.15880 1.19210 1.47974 0.86829 0.80532 0.82846 0.78852 1.20924 1.22240 1.17698 1.22815 0.91333 1.04112 1.03875 1.22885 0.97780 0.98772 1.04565 0.93117 0.93230 0.92467 0.90978 0.91568 0.93870 0.93462 0.91256 0.91401 0.90612 0.94002 0.77641 0.81151 0.91761 0.92858 0.92469 0.91397 0.90109 0.89830 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.79 37.15 0.33 -1.51 16 2 C -0.08 -1.19 2.70 -90.62 -0.24 -1.43 16 3 C -0.14 -1.96 7.68 37.16 0.29 -1.67 16 4 C 0.10 1.60 1.74 -67.71 -0.12 1.48 16 5 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 6 C -0.12 -2.01 4.84 -26.73 -0.13 -2.14 16 7 C 0.07 1.18 6.05 37.16 0.22 1.41 16 8 O -0.58 -10.12 13.66 -35.23 -0.48 -10.60 16 9 N -0.68 -12.95 6.28 -106.72 -0.67 -13.62 16 10 C 0.08 1.63 4.72 -3.82 -0.02 1.61 16 11 C -0.03 -0.58 1.02 -155.66 -0.16 -0.74 16 12 C -0.50 -12.43 7.30 -34.44 -0.25 -12.68 16 13 H 0.08 2.16 5.77 -52.49 -0.30 1.86 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 15 N -0.89 -25.45 13.96 55.43 0.77 -24.67 16 16 Si 0.88 21.02 25.21 -169.99 -4.28 16.74 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.25 -5.72 5.22 56.52 0.30 -5.43 16 20 C -0.18 -3.61 9.60 -26.73 -0.26 -3.87 16 21 C -0.20 -4.17 7.63 -26.73 -0.20 -4.38 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.99 6.73 -51.93 -0.35 0.65 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.65 7.47 -51.93 -0.39 0.27 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.04 6.22 -51.93 -0.32 0.72 16 31 H 0.08 1.58 4.75 -51.93 -0.25 1.33 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.38 5.19 9.12 45.56 0.42 5.61 16 34 H 0.36 7.75 4.62 -39.29 -0.18 7.57 16 35 H 0.06 1.36 6.22 -51.93 -0.32 1.04 16 36 H 0.05 0.96 5.01 -51.92 -0.26 0.70 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 39 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.08 1.83 7.35 -51.92 -0.38 1.45 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -27.23 304.51 -6.81 -34.04 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.09 Total: 15.33 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -0.64 Total: -21.80 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.10 Total: -38.29 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.48 Total: -10.60 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.28 Total: 16.74 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.23 -6.81 -34.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231078709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.760 kcal (2) G-P(sol) polarization free energy of solvation -27.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds