Wall clock time and date at job start Sun Mar 29 2020 23:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47039 * 2 1 4 4 H 1.08998 * 109.46866 * 179.51586 * 3 2 1 5 5 C 1.50700 * 109.47093 * 299.51826 * 3 2 1 6 6 H 1.07997 * 119.99771 * 120.00057 * 5 3 2 7 7 C 1.37875 * 120.00159 * 299.99944 * 5 3 2 8 8 N 1.31511 * 119.99898 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00100 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47016 * 90.00094 * 9 7 5 11 11 H 1.48498 * 109.47295 * 210.00188 * 9 7 5 12 12 H 1.48501 * 109.47138 * 330.00369 * 9 7 5 13 13 N 1.46902 * 109.47075 * 59.51930 * 3 2 1 14 14 C 1.46896 * 110.99862 * 85.85036 * 13 3 2 15 15 H 1.09000 * 109.47834 * 327.25633 * 14 13 3 16 16 C 1.52996 * 109.47069 * 87.25771 * 14 13 3 17 17 C 1.53001 * 109.47296 * 207.25622 * 14 13 3 18 18 C 1.53180 * 109.54166 * 299.82576 * 17 14 13 19 19 C 1.53111 * 109.15564 * 183.23549 * 18 17 14 20 20 O 1.42910 * 109.48242 * 57.47646 * 19 18 17 21 21 C 1.42900 * 114.09994 * 298.88390 * 20 19 18 22 22 C 1.53095 * 109.41257 * 61.15813 * 21 20 19 23 23 H 1.08994 * 109.46937 * 296.24363 * 1 2 3 24 24 H 1.09000 * 109.46764 * 56.24267 * 1 2 3 25 25 H 1.09008 * 109.47024 * 176.24062 * 1 2 3 26 26 H 1.08999 * 109.47011 * 120.00085 * 2 1 3 27 27 H 1.09001 * 109.46981 * 239.99717 * 2 1 3 28 28 H 0.96999 * 120.00562 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99872 * 209.80794 * 13 3 2 30 30 H 1.09008 * 109.47501 * 179.97438 * 16 14 13 31 31 H 1.08999 * 109.47684 * 299.99915 * 16 14 13 32 32 H 1.09004 * 109.47229 * 59.99966 * 16 14 13 33 33 H 1.09000 * 109.54400 * 60.00015 * 17 14 13 34 34 H 1.08996 * 109.52662 * 303.05536 * 18 17 14 35 35 H 1.08998 * 109.52263 * 63.24699 * 18 17 14 36 36 H 1.08996 * 109.40687 * 297.49401 * 19 18 17 37 37 H 1.09002 * 109.47997 * 177.50197 * 19 18 17 38 38 H 1.08997 * 109.48259 * 301.18321 * 21 20 19 39 39 H 1.08995 * 109.48079 * 181.13904 * 21 20 19 40 40 H 1.08998 * 109.52554 * 182.48393 * 22 21 20 41 41 H 1.09005 * 109.56911 * 62.33175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0087 5 6 1.5475 2.1494 -1.2364 6 1 0.9258 3.0278 -1.1446 7 6 1.8905 1.6749 -2.4846 8 7 2.6471 0.6051 -2.5963 9 14 1.2805 2.5516 -4.0172 10 1 2.2623 3.5918 -4.4162 11 1 1.1240 1.5696 -5.1200 12 1 -0.0297 3.1905 -3.7336 13 7 1.5409 2.1383 1.1936 14 6 2.4264 1.9121 2.3436 15 1 2.8648 0.9166 2.2745 16 6 3.5403 2.9610 2.3436 17 6 1.6195 2.0252 3.6387 18 6 1.0063 3.4252 3.7397 19 6 0.2689 3.5555 5.0752 20 8 1.1770 3.2983 6.1482 21 6 1.7438 1.9866 6.1312 22 6 2.5422 1.7940 4.8393 23 1 -0.3633 0.4544 0.9217 24 1 -0.3633 0.5711 -0.8544 25 1 -0.3633 -1.0255 -0.0674 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 2.8887 0.2714 -3.4745 29 1 1.4247 3.1246 1.0151 30 1 4.1972 2.7934 3.1973 31 1 4.1152 2.8805 1.4211 32 1 3.1019 3.9566 2.4129 33 1 0.8255 1.2784 3.6399 34 1 1.7968 4.1738 3.6870 35 1 0.3053 3.5760 2.9188 36 1 -0.5480 2.8348 5.1096 37 1 -0.1320 4.5645 5.1721 38 1 0.9462 1.2453 6.1795 39 1 2.4054 1.8654 6.9889 40 1 2.9386 0.7793 4.8039 41 1 3.3654 2.5079 4.8089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233871087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:34 Heat of formation + Delta-G solvation = -85.092079 kcal Electronic energy + Delta-G solvation = -18609.172956 eV Core-core repulsion = 15908.376261 eV Total energy + Delta-G solvation = -2700.796695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59145 -38.45253 -36.12296 -33.74099 -32.33175 -31.89992 -29.81675 -27.76310 -26.17121 -25.14151 -24.30697 -22.77484 -20.95402 -19.88910 -18.39920 -17.05639 -16.91031 -16.76026 -16.13259 -15.70662 -15.56661 -15.22385 -14.95566 -14.40821 -14.08414 -14.03047 -13.72847 -13.39583 -13.06604 -12.91008 -12.82960 -12.60228 -12.39424 -12.25800 -11.95832 -11.84068 -11.76050 -11.56239 -11.31621 -11.24524 -10.89314 -10.75317 -10.53334 -10.33029 -8.87714 -8.08312 -6.20102 1.41109 1.43213 1.52489 2.43058 3.05252 3.20545 3.58117 3.86851 3.97314 4.13949 4.24005 4.38119 4.39317 4.47886 4.51447 4.64088 4.71926 4.77596 4.81576 4.86395 4.93110 4.95427 4.99658 5.07654 5.13946 5.25876 5.26864 5.35119 5.39677 5.46269 5.59012 5.64148 5.73826 5.85470 5.94248 6.31143 6.34299 6.56477 6.87273 7.10045 7.49020 8.96676 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037715 B = 0.005691 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.235346 B = 4918.821261 C = 5010.079784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.225 3.775 4 H -0.038 1.038 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.672 5.672 14 C 0.091 3.909 15 H 0.049 0.951 16 C -0.172 4.172 17 C -0.066 4.066 18 C -0.144 4.144 19 C 0.062 3.938 20 O -0.402 6.402 21 C 0.062 3.938 22 C -0.151 4.151 23 H 0.053 0.947 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 3.268 14.224 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C 0.116 3.884 4 H -0.020 1.020 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.302 5.302 14 C -0.020 4.020 15 H 0.067 0.933 16 C -0.230 4.230 17 C -0.085 4.085 18 C -0.182 4.182 19 C -0.014 4.014 20 O -0.322 6.322 21 C -0.015 4.015 22 C -0.189 4.189 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.575 2.776 14.389 14.879 hybrid contribution 0.788 0.460 -1.796 2.014 sum -1.786 3.236 12.593 13.124 Atomic orbital electron populations 1.21292 0.95933 0.98175 1.00892 1.21321 0.96298 0.97976 0.98161 1.18857 0.90561 0.91895 0.87039 1.02006 1.21473 1.31151 1.11838 0.91443 0.92532 1.25610 0.95308 0.95624 1.01720 1.70020 1.37755 1.23929 1.24052 0.85645 0.78865 0.78235 0.79417 1.20490 1.21224 1.19206 1.60691 1.49078 1.15371 1.05017 1.21495 0.91563 0.97341 0.91582 0.93314 1.22480 0.99526 1.00116 1.00898 1.21041 0.97285 0.97429 0.92772 1.22177 1.00766 0.96971 0.98261 1.22650 0.91043 1.02102 0.85622 1.87868 1.62003 1.33302 1.48985 1.22659 0.96862 0.84091 0.97854 1.22299 0.99027 1.02771 0.94762 0.92782 0.94611 0.95130 0.96512 0.92661 0.93141 0.85206 0.90989 0.95362 0.91755 0.91848 0.91550 0.90776 0.92941 0.87910 0.92802 0.87475 0.90564 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.95 16 2 C -0.10 -4.81 5.57 30.60 0.17 -4.64 16 3 C 0.23 11.13 2.11 44.17 0.09 11.22 16 4 H -0.04 -2.11 7.28 -2.39 -0.02 -2.13 16 5 C -0.52 -27.76 7.29 25.60 0.19 -27.57 16 6 H 0.06 2.97 7.60 -2.91 -0.02 2.95 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -52.69 11.31 21.45 0.24 -52.45 16 9 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 N -0.67 -26.87 4.84 -473.32 -2.29 -29.16 16 14 C 0.09 3.07 2.23 44.92 0.10 3.17 16 15 H 0.05 1.84 7.18 -2.39 -0.02 1.82 16 16 C -0.17 -5.39 8.45 71.98 0.61 -4.78 16 17 C -0.07 -1.80 2.29 -10.67 -0.02 -1.83 16 18 C -0.14 -3.61 4.83 30.69 0.15 -3.46 16 19 C 0.06 1.37 6.84 72.02 0.49 1.86 16 20 O -0.40 -9.68 10.77 -148.98 -1.60 -11.28 16 21 C 0.06 1.25 6.84 72.01 0.49 1.75 16 22 C -0.15 -3.41 5.15 30.68 0.16 -3.25 16 23 H 0.05 2.21 7.71 -2.39 -0.02 2.19 16 24 H 0.03 1.69 7.10 -2.39 -0.02 1.67 16 25 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.02 0.75 7.53 -2.39 -0.02 0.73 16 27 H 0.05 3.04 6.06 -2.39 -0.01 3.03 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.33 13.13 7.38 -89.69 -0.66 12.46 16 30 H 0.07 1.93 6.36 -2.38 -0.02 1.92 16 31 H 0.03 1.02 7.61 -2.39 -0.02 1.00 16 32 H 0.06 1.88 6.35 -2.38 -0.02 1.86 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 1.68 6.28 -2.39 -0.02 1.67 16 35 H 0.07 1.99 7.46 -2.39 -0.02 1.97 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.65 6.28 -2.38 -0.01 1.64 16 Total: -1.00 -58.39 307.68 2.27 -56.13 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.33 Total: 21.61 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 3.56 Total: -30.15 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.05 Total: -81.61 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.60 Total: -11.28 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -58.39 2.27 -56.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233871087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.966 kcal (2) G-P(sol) polarization free energy of solvation -58.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds