Wall clock time and date at job start Sun Mar 29 2020 23:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47532 * 55.92591 * 3 2 1 5 5 C 1.50706 * 109.47555 * 175.92561 * 3 2 1 6 6 H 1.08000 * 119.99987 * 119.99490 * 5 3 2 7 7 C 1.37879 * 119.99722 * 300.00109 * 5 3 2 8 8 N 1.31509 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99860 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47126 * 89.99760 * 9 7 5 11 11 H 1.48497 * 109.47390 * 209.99815 * 9 7 5 12 12 H 1.48500 * 109.47204 * 330.00056 * 9 7 5 13 13 N 1.46901 * 109.47075 * 295.92388 * 3 2 1 14 14 C 1.46903 * 111.00218 * 156.08939 * 13 3 2 15 15 H 1.09000 * 109.46816 * 34.67524 * 14 13 3 16 16 C 1.53000 * 109.47100 * 274.67677 * 14 13 3 17 17 C 1.52998 * 109.47226 * 154.67345 * 14 13 3 18 18 C 1.53177 * 109.54378 * 185.00362 * 17 14 13 19 19 C 1.53094 * 109.16383 * 183.15515 * 18 17 14 20 20 O 1.42903 * 109.41611 * 57.60787 * 19 18 17 21 21 C 1.42905 * 114.09390 * 298.84133 * 20 19 18 22 22 C 1.53093 * 109.41485 * 61.16330 * 21 20 19 23 23 H 1.09004 * 109.47045 * 185.07263 * 1 2 3 24 24 H 1.08999 * 109.47770 * 305.07281 * 1 2 3 25 25 H 1.08998 * 109.47297 * 65.07691 * 1 2 3 26 26 H 1.08998 * 109.47662 * 239.99703 * 2 1 3 27 27 H 1.09003 * 109.47150 * 119.99520 * 2 1 3 28 28 H 0.97003 * 119.99969 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00321 * 280.04387 * 13 3 2 30 30 H 1.09006 * 109.46852 * 185.87251 * 16 14 13 31 31 H 1.08990 * 109.47151 * 305.87124 * 16 14 13 32 32 H 1.08996 * 109.47061 * 65.87935 * 16 14 13 33 33 H 1.09003 * 109.54605 * 305.18172 * 17 14 13 34 34 H 1.09002 * 109.52314 * 63.24664 * 18 17 14 35 35 H 1.09001 * 109.57314 * 303.08921 * 18 17 14 36 36 H 1.08999 * 109.47830 * 297.62187 * 19 18 17 37 37 H 1.09004 * 109.47864 * 177.58939 * 19 18 17 38 38 H 1.09005 * 109.48032 * 181.14111 * 21 20 19 39 39 H 1.08998 * 109.48181 * 301.17591 * 21 20 19 40 40 H 1.09003 * 109.52329 * 182.48364 * 22 21 20 41 41 H 1.08997 * 109.57801 * 62.32179 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6183 1.9769 0.8512 5 6 3.5436 1.4437 0.1010 6 1 4.1370 1.8925 -0.6819 7 6 4.1617 0.8719 1.1928 8 7 3.4390 0.3259 2.1462 9 14 6.0255 0.8729 1.3176 10 1 6.4739 2.1020 2.0200 11 1 6.4713 -0.3222 2.0779 12 1 6.6129 0.8397 -0.0459 13 7 1.6323 2.1059 -1.2456 14 6 1.5811 3.5639 -1.0732 15 1 2.3686 3.8765 -0.3875 16 6 0.2191 3.9623 -0.5013 17 6 1.7845 4.2451 -2.4280 18 6 1.8563 5.7627 -2.2328 19 6 1.9806 6.4399 -3.6002 20 8 0.8698 6.0667 -4.4179 21 6 0.7790 4.6636 -4.6737 22 6 0.6063 3.9151 -3.3495 23 1 -0.3633 -1.0237 0.0909 24 1 -0.3634 0.5905 0.8410 25 1 -0.3634 0.4330 -0.9319 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8739 -0.0761 2.9146 29 1 2.2442 1.8531 -2.0070 30 1 0.1417 5.0492 -0.4709 31 1 -0.5722 3.5593 -1.1332 32 1 0.1177 3.5625 0.5076 33 1 2.7118 3.8912 -2.8786 34 1 2.7250 6.0109 -1.6230 35 1 0.9508 6.1101 -1.7353 36 1 2.9072 6.1240 -4.0793 37 1 1.9890 7.5222 -3.4703 38 1 -0.0782 4.4661 -5.3174 39 1 1.6899 4.3244 -5.1670 40 1 0.5812 2.8418 -3.5384 41 1 -0.3251 4.2233 -2.8745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233872167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:36 Heat of formation + Delta-G solvation = -71.960488 kcal Electronic energy + Delta-G solvation = -18591.190193 eV Core-core repulsion = 15890.962926 eV Total energy + Delta-G solvation = -2700.227267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.46659 -36.83293 -34.46900 -31.93095 -30.99306 -30.73948 -28.54822 -26.06243 -24.87888 -23.41638 -22.73853 -20.99144 -19.38078 -18.79282 -16.66165 -15.95393 -15.89165 -14.87664 -14.84814 -14.59106 -14.29952 -13.58258 -13.34900 -12.90509 -12.77018 -12.23686 -12.05853 -11.79410 -11.57941 -11.30704 -11.18562 -11.04713 -10.97472 -10.69966 -10.64895 -10.43758 -10.25528 -10.01942 -9.90858 -9.56690 -9.54899 -9.18573 -8.98839 -8.37333 -7.21911 -5.99752 -4.12904 3.24847 3.32517 3.34819 3.97312 4.38257 4.86866 4.99020 5.08161 5.19220 5.24701 5.32957 5.50703 5.53561 5.61975 5.76573 5.87507 5.91452 6.07316 6.13993 6.23341 6.26768 6.36974 6.42007 6.51585 6.53897 6.62881 6.72756 6.78276 6.96809 7.15449 7.19240 7.28388 7.47216 7.61898 7.78242 8.10620 8.18362 8.36313 8.69791 9.01098 9.54808 10.99973 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.006757 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.138711 B = 4142.779727 C = 4816.251963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.095 3.905 15 H 0.046 0.954 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.152 4.152 19 C 0.063 3.937 20 O -0.389 6.389 21 C 0.058 3.942 22 C -0.143 4.143 23 H 0.023 0.977 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.261 0.739 29 H 0.325 0.675 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 7.780 -8.957 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.016 4.016 15 H 0.064 0.936 16 C -0.194 4.194 17 C -0.106 4.106 18 C -0.190 4.190 19 C -0.014 4.014 20 O -0.308 6.308 21 C -0.018 4.018 22 C -0.181 4.181 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.035 7.718 -8.721 12.687 hybrid contribution 2.363 -0.087 0.417 2.401 sum -2.672 7.630 -8.304 11.590 Atomic orbital electron populations 1.21675 0.98996 0.98131 1.00366 1.21487 0.92069 0.99361 1.01548 1.19163 0.92375 0.91044 0.86650 0.94945 1.21887 0.92871 1.37820 1.05792 0.93028 1.24929 0.97843 0.95044 0.95698 1.69877 1.34842 1.38058 1.09539 0.86686 0.86258 0.77527 0.78048 1.20810 1.21149 1.20061 1.60970 1.56367 1.04829 1.09061 1.21285 0.96606 0.89836 0.93830 0.93589 1.21865 0.97686 0.98932 1.00944 1.21347 0.98147 0.94282 0.96852 1.22293 1.03064 0.96132 0.97519 1.22549 0.88920 0.99386 0.90571 1.87876 1.48831 1.23845 1.70227 1.22652 1.01098 0.81110 0.96973 1.22199 0.99359 1.01301 0.95192 0.95828 0.94521 0.93460 0.95229 0.89319 0.92912 0.85878 0.93715 0.92493 0.93109 0.91700 0.91100 0.90724 0.93586 0.89405 0.89393 0.93666 0.90019 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.73 37.15 0.36 -2.39 16 2 C -0.11 -2.52 5.44 -26.74 -0.15 -2.67 16 3 C 0.22 5.22 1.80 -68.87 -0.12 5.09 16 4 H 0.03 0.88 7.20 -51.93 -0.37 0.51 16 5 C -0.54 -14.48 8.21 -34.44 -0.28 -14.76 16 6 H 0.05 1.37 7.76 -52.49 -0.41 0.96 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.91 11.30 55.43 0.63 -24.29 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 N -0.68 -13.67 5.10 -100.96 -0.51 -14.19 16 14 C 0.09 1.70 2.20 -67.71 -0.15 1.55 16 15 H 0.05 0.96 7.59 -51.93 -0.39 0.57 16 16 C -0.14 -2.28 8.56 37.16 0.32 -1.96 16 17 C -0.09 -1.29 1.97 -90.44 -0.18 -1.47 16 18 C -0.15 -2.00 5.25 -26.59 -0.14 -2.13 16 19 C 0.06 0.75 6.84 37.21 0.25 1.00 16 20 O -0.39 -5.29 10.77 -35.23 -0.38 -5.66 16 21 C 0.06 0.71 6.84 37.21 0.25 0.97 16 22 C -0.14 -1.93 4.87 -26.59 -0.13 -2.06 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.36 5.97 -51.93 -0.31 2.05 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.32 6.51 7.99 -39.29 -0.31 6.19 16 30 H 0.04 0.66 6.26 -51.93 -0.33 0.33 16 31 H 0.06 0.92 6.64 -51.93 -0.34 0.57 16 32 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 33 H 0.06 1.00 8.02 -51.93 -0.42 0.58 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.99 6.33 -51.93 -0.33 0.66 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 41 H 0.07 1.03 6.31 -51.93 -0.33 0.70 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -27.39 311.81 -7.91 -35.30 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.27 Total: 5.21 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.09 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.11 Total: -38.48 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.38 Total: -5.66 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.39 -7.91 -35.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233872167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.657 kcal (2) G-P(sol) polarization free energy of solvation -27.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds