Wall clock time and date at job start Sun Mar 29 2020 23:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47532 * 55.92591 * 3 2 1 5 5 C 1.50706 * 109.47555 * 175.92561 * 3 2 1 6 6 H 1.08000 * 119.99987 * 119.99490 * 5 3 2 7 7 C 1.37879 * 119.99722 * 300.00109 * 5 3 2 8 8 N 1.31509 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99860 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47126 * 89.99760 * 9 7 5 11 11 H 1.48497 * 109.47390 * 209.99815 * 9 7 5 12 12 H 1.48500 * 109.47204 * 330.00056 * 9 7 5 13 13 N 1.46901 * 109.47075 * 295.92388 * 3 2 1 14 14 C 1.46903 * 111.00218 * 156.08939 * 13 3 2 15 15 H 1.09000 * 109.46816 * 34.67524 * 14 13 3 16 16 C 1.53000 * 109.47100 * 274.67677 * 14 13 3 17 17 C 1.52998 * 109.47226 * 154.67345 * 14 13 3 18 18 C 1.53177 * 109.54378 * 185.00362 * 17 14 13 19 19 C 1.53094 * 109.16383 * 183.15515 * 18 17 14 20 20 O 1.42903 * 109.41611 * 57.60787 * 19 18 17 21 21 C 1.42905 * 114.09390 * 298.84133 * 20 19 18 22 22 C 1.53093 * 109.41485 * 61.16330 * 21 20 19 23 23 H 1.09004 * 109.47045 * 185.07263 * 1 2 3 24 24 H 1.08999 * 109.47770 * 305.07281 * 1 2 3 25 25 H 1.08998 * 109.47297 * 65.07691 * 1 2 3 26 26 H 1.08998 * 109.47662 * 239.99703 * 2 1 3 27 27 H 1.09003 * 109.47150 * 119.99520 * 2 1 3 28 28 H 0.97003 * 119.99969 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00321 * 280.04387 * 13 3 2 30 30 H 1.09006 * 109.46852 * 185.87251 * 16 14 13 31 31 H 1.08990 * 109.47151 * 305.87124 * 16 14 13 32 32 H 1.08996 * 109.47061 * 65.87935 * 16 14 13 33 33 H 1.09003 * 109.54605 * 305.18172 * 17 14 13 34 34 H 1.09002 * 109.52314 * 63.24664 * 18 17 14 35 35 H 1.09001 * 109.57314 * 303.08921 * 18 17 14 36 36 H 1.08999 * 109.47830 * 297.62187 * 19 18 17 37 37 H 1.09004 * 109.47864 * 177.58939 * 19 18 17 38 38 H 1.09005 * 109.48032 * 181.14111 * 21 20 19 39 39 H 1.08998 * 109.48181 * 301.17591 * 21 20 19 40 40 H 1.09003 * 109.52329 * 182.48364 * 22 21 20 41 41 H 1.08997 * 109.57801 * 62.32179 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6183 1.9769 0.8512 5 6 3.5436 1.4437 0.1010 6 1 4.1370 1.8925 -0.6819 7 6 4.1617 0.8719 1.1928 8 7 3.4390 0.3259 2.1462 9 14 6.0255 0.8729 1.3176 10 1 6.4739 2.1020 2.0200 11 1 6.4713 -0.3222 2.0779 12 1 6.6129 0.8397 -0.0459 13 7 1.6323 2.1059 -1.2456 14 6 1.5811 3.5639 -1.0732 15 1 2.3686 3.8765 -0.3875 16 6 0.2191 3.9623 -0.5013 17 6 1.7845 4.2451 -2.4280 18 6 1.8563 5.7627 -2.2328 19 6 1.9806 6.4399 -3.6002 20 8 0.8698 6.0667 -4.4179 21 6 0.7790 4.6636 -4.6737 22 6 0.6063 3.9151 -3.3495 23 1 -0.3633 -1.0237 0.0909 24 1 -0.3634 0.5905 0.8410 25 1 -0.3634 0.4330 -0.9319 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8739 -0.0761 2.9146 29 1 2.2442 1.8531 -2.0070 30 1 0.1417 5.0492 -0.4709 31 1 -0.5722 3.5593 -1.1332 32 1 0.1177 3.5625 0.5076 33 1 2.7118 3.8912 -2.8786 34 1 2.7250 6.0109 -1.6230 35 1 0.9508 6.1101 -1.7353 36 1 2.9072 6.1240 -4.0793 37 1 1.9890 7.5222 -3.4703 38 1 -0.0782 4.4661 -5.3174 39 1 1.6899 4.3244 -5.1670 40 1 0.5812 2.8418 -3.5384 41 1 -0.3251 4.2233 -2.8745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233872167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:36 Heat of formation + Delta-G solvation = -88.408272 kcal Electronic energy + Delta-G solvation = -18591.903422 eV Core-core repulsion = 15890.962926 eV Total energy + Delta-G solvation = -2700.940496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59469 -38.35703 -36.06780 -33.82036 -32.38936 -31.91694 -30.09542 -27.92675 -26.17031 -24.65561 -24.33364 -22.27960 -21.26522 -20.06868 -18.65929 -17.05746 -17.01470 -16.71972 -16.18948 -15.86938 -15.58462 -15.28175 -14.65683 -14.51759 -14.30549 -13.71120 -13.37114 -13.17445 -13.13344 -13.05563 -12.91088 -12.60135 -12.53689 -12.31966 -12.12880 -11.82014 -11.61659 -11.53581 -11.45914 -11.26748 -11.08235 -10.81832 -10.45634 -10.32560 -9.00107 -8.05214 -6.27940 1.35446 1.37550 1.46288 2.38516 3.03805 3.13714 3.58666 3.83545 3.93396 4.08422 4.20642 4.37759 4.47782 4.54736 4.55066 4.64561 4.76590 4.78335 4.81950 4.85379 4.91882 4.96819 5.02865 5.06873 5.16208 5.22066 5.29009 5.35416 5.39865 5.44208 5.52432 5.63134 5.67072 5.80417 6.13714 6.22956 6.32530 6.43032 6.87436 7.05483 7.43887 8.90511 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.006757 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.138711 B = 4142.779727 C = 4816.251963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.002 1.002 5 C -0.558 4.558 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.095 3.905 15 H 0.011 0.989 16 C -0.128 4.128 17 C -0.081 4.081 18 C -0.149 4.149 19 C 0.063 3.937 20 O -0.401 6.401 21 C 0.060 3.940 22 C -0.136 4.136 23 H 0.042 0.958 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.326 0.674 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 8.573 -10.497 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.597 4.597 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.299 5.299 14 C -0.015 4.015 15 H 0.030 0.970 16 C -0.186 4.186 17 C -0.100 4.100 18 C -0.187 4.187 19 C -0.013 4.013 20 O -0.320 6.320 21 C -0.017 4.017 22 C -0.174 4.174 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.110 8.520 -10.275 14.293 hybrid contribution 2.375 -0.315 0.906 2.561 sum -2.735 8.205 -9.369 12.751 Atomic orbital electron populations 1.21525 0.96363 0.99338 1.00635 1.21352 0.94401 0.98519 0.99873 1.18898 0.91070 0.91302 0.87132 0.98445 1.22203 0.94270 1.37501 1.05727 0.93389 1.25657 1.02008 0.94879 0.95514 1.70010 1.36405 1.38702 1.09952 0.85723 0.81286 0.77481 0.78135 1.20538 1.20814 1.19451 1.60910 1.55649 1.06127 1.07222 1.21320 0.96234 0.88623 0.95312 0.97039 1.21789 0.97063 1.00266 0.99469 1.21259 0.98596 0.95249 0.94928 1.22267 1.03067 0.94747 0.98622 1.22637 0.88852 1.00437 0.89392 1.87870 1.49391 1.24396 1.70357 1.22715 1.02320 0.80410 0.96232 1.22131 0.98312 1.01257 0.95711 0.93935 0.95335 0.92190 0.95355 0.92404 0.92955 0.85731 0.91581 0.91558 0.95555 0.92313 0.91184 0.90706 0.92945 0.87431 0.87593 0.92976 0.90482 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.73 71.98 0.70 -4.19 16 2 C -0.10 -4.94 5.44 30.59 0.17 -4.77 16 3 C 0.22 11.13 1.80 44.17 0.08 11.21 16 4 H 0.00 -0.14 7.20 -2.39 -0.02 -0.15 16 5 C -0.56 -30.19 8.21 25.60 0.21 -29.97 16 6 H 0.05 2.57 7.76 -2.91 -0.02 2.55 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -52.45 11.30 21.45 0.24 -52.21 16 9 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 N -0.67 -26.93 5.10 -473.31 -2.41 -29.35 16 14 C 0.10 3.43 2.20 44.91 0.10 3.53 16 15 H 0.01 0.49 7.59 -2.39 -0.02 0.48 16 16 C -0.13 -4.23 8.56 71.98 0.62 -3.62 16 17 C -0.08 -2.31 1.97 -10.67 -0.02 -2.33 16 18 C -0.15 -3.66 5.25 30.68 0.16 -3.50 16 19 C 0.06 1.36 6.84 72.01 0.49 1.85 16 20 O -0.40 -9.77 10.77 -148.98 -1.60 -11.38 16 21 C 0.06 1.29 6.84 72.01 0.49 1.79 16 22 C -0.14 -3.42 4.87 30.69 0.15 -3.27 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 25 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.06 3.16 5.97 -2.39 -0.01 3.14 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.33 13.00 7.99 -89.69 -0.72 12.29 16 30 H 0.07 1.87 6.26 -2.38 -0.01 1.86 16 31 H 0.07 2.06 6.64 -2.39 -0.02 2.04 16 32 H 0.03 0.97 7.52 -2.39 -0.02 0.95 16 33 H 0.06 1.75 8.02 -2.39 -0.02 1.73 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.84 6.33 -2.39 -0.02 1.82 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 2.01 7.87 -2.39 -0.02 1.99 16 41 H 0.07 1.82 6.31 -2.39 -0.02 1.81 16 Total: -1.00 -58.78 311.81 2.12 -56.66 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.27 Total: 22.54 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 3.59 Total: -31.77 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -2.17 Total: -81.55 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.60 Total: -11.38 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -58.78 2.12 -56.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233872167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.747 kcal (2) G-P(sol) polarization free energy of solvation -58.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds