Wall clock time and date at job start Sun Mar 29 2020 23:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 H 1.09000 * 109.46883 * 304.23952 * 3 2 1 5 5 C 1.50701 * 109.47271 * 184.23819 * 3 2 1 6 6 H 1.07996 * 119.99855 * 240.00110 * 5 3 2 7 7 C 1.37874 * 119.99833 * 59.99322 * 5 3 2 8 8 N 1.31509 * 120.00165 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99911 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46663 * 90.00352 * 9 7 5 11 11 H 1.48496 * 109.47121 * 210.00571 * 9 7 5 12 12 H 1.48502 * 109.47110 * 330.00644 * 9 7 5 13 13 N 1.46904 * 109.47396 * 64.23669 * 3 2 1 14 14 C 1.46895 * 111.00077 * 206.03514 * 13 3 2 15 15 H 1.08998 * 109.47146 * 326.24870 * 14 13 3 16 16 C 1.52999 * 109.47741 * 86.25067 * 14 13 3 17 17 C 1.53001 * 109.46923 * 206.25224 * 14 13 3 18 18 C 1.53175 * 109.54424 * 299.55192 * 17 14 13 19 19 C 1.53091 * 109.16572 * 183.15128 * 18 17 14 20 20 O 1.42911 * 109.41080 * 57.61172 * 19 18 17 21 21 C 1.42905 * 114.09709 * 298.83829 * 20 19 18 22 22 C 1.53093 * 109.41274 * 61.16308 * 21 20 19 23 23 H 1.08991 * 109.46953 * 63.98079 * 1 2 3 24 24 H 1.09003 * 109.46879 * 183.98395 * 1 2 3 25 25 H 1.09005 * 109.47005 * 303.97970 * 1 2 3 26 26 H 1.08994 * 109.46786 * 239.99400 * 2 1 3 27 27 H 1.09007 * 109.46835 * 119.99746 * 2 1 3 28 28 H 0.96998 * 120.00128 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00034 * 82.07745 * 13 3 2 30 30 H 1.08997 * 109.46654 * 297.90642 * 16 14 13 31 31 H 1.09004 * 109.46540 * 57.90346 * 16 14 13 32 32 H 1.08994 * 109.47344 * 177.90666 * 16 14 13 33 33 H 1.09001 * 109.54756 * 59.81935 * 17 14 13 34 34 H 1.09002 * 109.52531 * 303.06078 * 18 17 14 35 35 H 1.09002 * 109.52193 * 63.24524 * 18 17 14 36 36 H 1.09002 * 109.48263 * 297.63014 * 19 18 17 37 37 H 1.08999 * 109.47913 * 177.58965 * 19 18 17 38 38 H 1.09002 * 109.48267 * 301.17917 * 21 20 19 39 39 H 1.08997 * 109.47960 * 181.14268 * 21 20 19 40 40 H 1.08999 * 109.52246 * 182.48755 * 22 21 20 41 41 H 1.08998 * 109.52559 * 62.29545 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6160 1.9777 -0.8496 5 6 3.5434 1.4438 -0.1050 6 1 4.1389 1.8918 0.6767 7 6 4.1585 0.8729 -1.1989 8 7 3.4334 0.3277 -2.1509 9 14 6.0220 0.8752 -1.3294 10 1 6.5640 -0.3535 -0.6954 11 1 6.4179 0.9099 -2.7602 12 1 6.5653 2.0708 -0.6363 13 7 1.6357 2.1048 1.2473 14 6 1.5353 3.5587 1.0627 15 1 2.2886 3.8869 0.3465 16 6 0.1428 3.9111 0.5358 17 6 1.7661 4.2600 2.4028 18 6 0.7017 3.8084 3.4075 19 6 0.8926 4.5734 4.7198 20 8 0.8148 5.9777 4.4666 21 6 1.8156 6.4654 3.5707 22 6 1.6618 5.7764 2.2122 23 1 -0.3633 0.4508 -0.9234 24 1 -0.3633 -1.0252 0.0714 25 1 -0.3633 0.5744 0.8522 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.8661 -0.0736 -2.9207 29 1 2.2699 1.8787 1.9988 30 1 -0.0073 3.4415 -0.4363 31 1 -0.6120 3.5498 1.2344 32 1 0.0558 4.9928 0.4341 33 1 2.7567 4.0073 2.7809 34 1 -0.2900 4.0162 3.0056 35 1 0.8045 2.7389 3.5910 36 1 1.8686 4.3336 5.1417 37 1 0.1115 4.2872 5.4242 38 1 2.8037 6.2503 3.9775 39 1 1.6996 7.5421 3.4473 40 1 2.4514 6.1142 1.5410 41 1 0.6896 6.0239 1.7862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234005475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:38 Heat of formation + Delta-G solvation = -71.233482 kcal Electronic energy + Delta-G solvation = -18599.198117 eV Core-core repulsion = 15899.002376 eV Total energy + Delta-G solvation = -2700.195741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47112 -36.83703 -34.46490 -31.93022 -30.98972 -30.72484 -28.57269 -26.06028 -24.87601 -23.40982 -22.72041 -21.02828 -19.37830 -18.77283 -16.68107 -15.95323 -15.88723 -14.87774 -14.83962 -14.57694 -14.30183 -13.61770 -13.33835 -12.89053 -12.76150 -12.25951 -12.07083 -11.76921 -11.59825 -11.31172 -11.17691 -11.04256 -10.98278 -10.69302 -10.63775 -10.44953 -10.23991 -10.02418 -9.90466 -9.56921 -9.54139 -9.17275 -8.98255 -8.37490 -7.22278 -5.99860 -4.12956 3.25135 3.32556 3.34585 3.97476 4.38211 4.86892 4.99373 5.07913 5.19060 5.24655 5.33250 5.50507 5.53378 5.61870 5.76451 5.87161 5.91706 6.07189 6.14180 6.22895 6.26090 6.37635 6.41323 6.53720 6.55246 6.62284 6.72493 6.77351 6.97147 7.15279 7.20134 7.28556 7.48084 7.61627 7.78462 8.11193 8.17901 8.36466 8.69790 9.01207 9.54753 10.99992 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.006728 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.295442 B = 4160.785178 C = 4799.715816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.095 3.905 15 H 0.046 0.954 16 C -0.137 4.137 17 C -0.088 4.088 18 C -0.142 4.142 19 C 0.058 3.942 20 O -0.389 6.389 21 C 0.062 3.938 22 C -0.152 4.152 23 H 0.034 0.966 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.325 0.675 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 7.835 8.921 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.015 4.015 15 H 0.064 0.936 16 C -0.195 4.195 17 C -0.107 4.107 18 C -0.180 4.180 19 C -0.018 4.018 20 O -0.308 6.308 21 C -0.014 4.014 22 C -0.190 4.190 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.142 0.858 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.083 7.744 8.704 12.711 hybrid contribution 2.366 -0.055 -0.452 2.410 sum -2.717 7.690 8.251 11.602 Atomic orbital electron populations 1.21708 0.99053 0.98338 1.00370 1.21486 0.92056 0.99355 1.01509 1.19152 0.92427 0.91115 0.86552 0.95002 1.21879 0.92832 1.37884 1.05740 0.93017 1.24928 0.97842 0.95065 0.95681 1.69876 1.34820 1.38082 1.09539 0.86683 0.86257 0.78349 0.77208 1.20664 1.21208 1.20145 1.60960 1.54900 1.05731 1.09615 1.21284 0.96418 0.89821 0.94014 0.93638 1.21873 0.97421 0.99065 1.01111 1.21352 0.98637 0.94125 0.96598 1.22181 1.00100 1.00928 0.94774 1.22655 1.01016 0.80986 0.97185 1.87877 1.54161 1.23397 1.65343 1.22549 0.91130 0.98302 0.89457 1.22303 1.03159 0.96050 0.97509 0.94674 0.95812 0.93055 0.89355 0.95247 0.92911 0.85821 0.93003 0.92592 0.93695 0.91735 0.90840 0.89987 0.93675 0.89380 0.93606 0.89412 0.91133 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.84 37.16 0.37 -2.46 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.21 1.79 -68.86 -0.12 5.09 16 4 H 0.03 0.87 7.22 -51.93 -0.37 0.49 16 5 C -0.54 -14.47 8.32 -34.44 -0.29 -14.76 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.92 11.30 55.43 0.63 -24.30 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.65 4.78 -100.96 -0.48 -14.13 16 14 C 0.10 1.70 2.25 -67.72 -0.15 1.55 16 15 H 0.05 0.95 7.66 -51.93 -0.40 0.55 16 16 C -0.14 -2.27 8.70 37.16 0.32 -1.95 16 17 C -0.09 -1.30 1.95 -90.43 -0.18 -1.48 16 18 C -0.14 -1.93 4.93 -26.59 -0.13 -2.06 16 19 C 0.06 0.71 6.84 37.20 0.25 0.97 16 20 O -0.39 -5.29 10.77 -35.23 -0.38 -5.67 16 21 C 0.06 0.75 6.84 37.21 0.25 1.00 16 22 C -0.15 -1.99 5.15 -26.59 -0.14 -2.12 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.01 7.62 -51.93 -0.40 0.61 16 26 H 0.09 2.36 5.97 -51.93 -0.31 2.05 16 27 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.51 7.81 -39.29 -0.31 6.20 16 30 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 31 H 0.06 0.89 6.47 -51.93 -0.34 0.56 16 32 H 0.04 0.66 6.26 -51.93 -0.33 0.33 16 33 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 34 H 0.07 1.04 6.32 -51.93 -0.33 0.71 16 35 H 0.08 1.15 7.59 -51.93 -0.39 0.76 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.00 6.24 -51.93 -0.32 0.67 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -27.40 311.08 -7.85 -35.25 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.23 Total: 5.27 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.14 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.14 Total: -38.43 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.38 Total: -5.67 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.40 -7.85 -35.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234005475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.983 kcal (2) G-P(sol) polarization free energy of solvation -27.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds