Wall clock time and date at job start Sun Mar 29 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47301 * 2 1 4 4 H 1.09000 * 109.47436 * 175.27419 * 3 2 1 5 5 C 1.50707 * 109.46749 * 55.27262 * 3 2 1 6 6 H 1.07997 * 119.99990 * 239.99953 * 5 3 2 7 7 C 1.37881 * 119.99914 * 60.00107 * 5 3 2 8 8 N 1.31522 * 119.99963 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47236 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46948 * 120.00007 * 9 7 5 12 12 H 1.48500 * 109.47073 * 239.99586 * 9 7 5 13 13 N 1.46900 * 109.47597 * 295.27672 * 3 2 1 14 14 C 1.46895 * 110.99780 * 273.29247 * 13 3 2 15 15 H 1.09001 * 109.47744 * 34.98614 * 14 13 3 16 16 C 1.52998 * 109.47131 * 274.98710 * 14 13 3 17 17 C 1.53006 * 109.47344 * 154.98847 * 14 13 3 18 18 C 1.53173 * 109.54336 * 299.55353 * 17 14 13 19 19 C 1.53086 * 109.16404 * 183.15043 * 18 17 14 20 20 O 1.42901 * 109.41534 * 57.60880 * 19 18 17 21 21 C 1.42898 * 114.09895 * 298.84182 * 20 19 18 22 22 C 1.53100 * 109.41402 * 61.15685 * 21 20 19 23 23 H 1.08997 * 109.47514 * 57.34620 * 1 2 3 24 24 H 1.09008 * 109.46692 * 297.34969 * 1 2 3 25 25 H 1.09004 * 109.47391 * 177.35673 * 1 2 3 26 26 H 1.08994 * 109.47837 * 120.00416 * 2 1 3 27 27 H 1.09005 * 109.46585 * 240.00416 * 2 1 3 28 28 H 0.96999 * 120.00170 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99794 * 37.24107 * 13 3 2 30 30 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 31 31 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 32 32 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 33 33 H 1.09001 * 109.53865 * 59.81645 * 17 14 13 34 34 H 1.09001 * 109.52040 * 303.05748 * 18 17 14 35 35 H 1.09006 * 109.52347 * 63.24394 * 18 17 14 36 36 H 1.08996 * 109.48283 * 297.62241 * 19 18 17 37 37 H 1.09005 * 109.48218 * 177.59261 * 19 18 17 38 38 H 1.09001 * 109.48152 * 301.17512 * 21 20 19 39 39 H 1.08999 * 109.48325 * 181.14140 * 21 20 19 40 40 H 1.09000 * 109.52163 * 182.48715 * 22 21 20 41 41 H 1.08990 * 109.51990 * 62.29941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4437 0.0847 5 6 1.4443 2.1859 1.1678 6 1 0.8339 3.0602 0.9967 7 6 1.6786 1.7497 2.4546 8 7 2.4223 0.6851 2.6630 9 14 0.9408 2.6715 3.9021 10 1 0.1508 3.8257 3.4033 11 1 0.0542 1.7601 4.6694 12 1 2.0303 3.1609 4.7845 13 7 1.6457 2.1014 -1.2523 14 6 2.6364 1.8585 -2.3094 15 1 3.0488 0.8557 -2.1976 16 6 3.7626 2.8882 -2.1993 17 6 1.9632 1.9834 -3.6778 18 6 0.8425 0.9457 -3.7942 19 6 0.2274 1.0252 -5.1937 20 8 1.2459 0.8116 -6.1731 21 6 2.2966 1.7796 -6.1429 22 6 2.9949 1.7305 -4.7813 23 1 -0.3634 0.5545 -0.8652 24 1 -0.3633 0.4722 0.9129 25 1 -0.3634 -1.0266 -0.0474 26 1 1.8934 -0.5138 0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 2.5869 0.3780 3.5683 29 1 0.7264 1.8044 -1.5433 30 1 3.3504 3.8910 -2.3111 31 1 4.2422 2.7992 -1.2245 32 1 4.4975 2.7083 -2.9839 33 1 1.5477 2.9849 -3.7896 34 1 1.2514 -0.0516 -3.6320 35 1 0.0760 1.1521 -3.0471 36 1 -0.2169 2.0097 -5.3402 37 1 -0.5421 0.2600 -5.2966 38 1 1.8794 2.7740 -6.3017 39 1 3.0178 1.5580 -6.9296 40 1 3.7677 2.4981 -4.7404 41 1 3.4472 0.7491 -4.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234007797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:40 Heat of formation + Delta-G solvation = -67.198432 kcal Electronic energy + Delta-G solvation = -18681.526222 eV Core-core repulsion = 15981.505454 eV Total energy + Delta-G solvation = -2700.020768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54718 -37.07767 -34.53599 -31.93560 -31.18607 -30.67425 -28.29561 -26.18977 -24.83007 -23.46032 -23.02773 -20.97133 -19.71393 -18.96193 -16.54953 -15.95125 -15.77896 -15.35593 -14.70920 -14.53733 -13.91445 -13.76315 -13.56243 -12.89165 -12.74655 -12.54600 -12.28282 -11.89368 -11.60854 -11.35850 -11.21924 -11.03833 -10.96176 -10.79538 -10.51117 -10.41824 -10.31024 -10.11614 -9.85469 -9.77682 -9.56163 -9.27773 -8.90007 -8.31703 -7.15685 -5.95028 -3.96238 3.32219 3.40542 3.45460 3.89858 4.45845 4.80629 4.85521 4.99474 5.06735 5.23905 5.34675 5.36689 5.49026 5.55382 5.67103 5.77784 5.85425 5.92745 6.06861 6.10327 6.17580 6.20134 6.34650 6.37008 6.46571 6.51491 6.58241 6.66816 6.87770 6.91940 7.20872 7.31227 7.33782 7.51665 7.74050 7.93639 8.34009 8.62188 8.68251 9.10276 9.67615 11.12041 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038611 B = 0.005921 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.007631 B = 4727.660427 C = 5023.499418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.090 3.910 15 H 0.033 0.967 16 C -0.136 4.136 17 C -0.089 4.089 18 C -0.155 4.155 19 C 0.063 3.937 20 O -0.388 6.388 21 C 0.062 3.938 22 C -0.150 4.150 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.022 0.978 26 H 0.092 0.908 27 H 0.009 0.991 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 0.900 -13.809 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.020 4.020 15 H 0.051 0.949 16 C -0.194 4.194 17 C -0.107 4.107 18 C -0.192 4.192 19 C -0.014 4.014 20 O -0.307 6.307 21 C -0.015 4.015 22 C -0.188 4.188 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.110 0.890 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.719 1.263 -13.601 13.679 hybrid contribution -0.490 -0.355 0.988 1.159 sum -1.209 0.907 -12.613 12.703 Atomic orbital electron populations 1.21567 0.97802 0.97862 1.01187 1.22097 0.94869 1.01303 1.00164 1.19213 0.95829 0.88400 0.85779 0.94989 1.21127 1.30278 1.11343 0.89675 0.92092 1.24919 0.95612 0.95190 0.98735 1.69896 1.39077 1.24033 1.20709 0.86541 0.78912 0.79875 0.82686 1.19803 1.21295 1.21245 1.60943 1.03681 1.63224 1.03672 1.21412 0.93841 0.96930 0.89860 0.94863 1.21799 0.97219 0.99337 1.01013 1.21353 0.95252 0.99093 0.95042 1.22299 0.99211 1.00373 0.97355 1.22568 0.89965 1.01062 0.87759 1.87891 1.34632 1.52306 1.55822 1.22575 0.89596 0.92008 0.97343 1.22274 0.98783 1.02909 0.94836 0.95220 0.91672 0.95920 0.88979 0.97191 0.93250 0.85371 0.92687 0.92395 0.93788 0.90705 0.91204 0.90405 0.93317 0.89169 0.93419 0.89304 0.90559 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.40 37.15 0.35 -2.33 16 2 C -0.14 -3.38 5.50 -26.73 -0.15 -3.53 16 3 C 0.22 5.27 2.13 -68.86 -0.15 5.13 16 4 H 0.03 0.88 7.11 -51.93 -0.37 0.51 16 5 C -0.49 -13.08 7.41 -34.44 -0.26 -13.34 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.90 -25.36 11.37 55.43 0.63 -24.73 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.09 6.05 -100.95 -0.61 -14.70 16 14 C 0.09 1.58 2.03 -67.71 -0.14 1.44 16 15 H 0.03 0.64 7.23 -51.93 -0.38 0.26 16 16 C -0.14 -2.27 9.05 37.16 0.34 -1.94 16 17 C -0.09 -1.26 1.99 -90.44 -0.18 -1.44 16 18 C -0.15 -2.13 5.11 -26.60 -0.14 -2.27 16 19 C 0.06 0.76 6.84 37.20 0.25 1.02 16 20 O -0.39 -5.15 10.77 -35.23 -0.38 -5.53 16 21 C 0.06 0.69 6.84 37.21 0.25 0.94 16 22 C -0.15 -1.83 4.97 -26.59 -0.13 -1.97 16 23 H 0.03 0.56 6.03 -51.93 -0.31 0.25 16 24 H 0.06 1.51 7.17 -51.92 -0.37 1.14 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 2.43 6.21 -51.93 -0.32 2.11 16 27 H 0.01 0.21 7.51 -51.93 -0.39 -0.18 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.33 6.40 4.03 -39.29 -0.16 6.24 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.10 7.45 -51.93 -0.39 0.71 16 32 H 0.04 0.61 6.51 -51.93 -0.34 0.28 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.11 6.08 -51.93 -0.32 0.79 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.85 6.62 -51.93 -0.34 0.51 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -28.09 306.95 -7.82 -35.91 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.04 Total: 4.94 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.03 Total: -16.86 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.02 Total: -39.43 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.09 -7.82 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234007797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.287 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds