Wall clock time and date at job start Sun Mar 29 2020 23:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47301 * 2 1 4 4 H 1.09000 * 109.47436 * 175.27419 * 3 2 1 5 5 C 1.50707 * 109.46749 * 55.27262 * 3 2 1 6 6 H 1.07997 * 119.99990 * 239.99953 * 5 3 2 7 7 C 1.37881 * 119.99914 * 60.00107 * 5 3 2 8 8 N 1.31522 * 119.99963 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47236 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46948 * 120.00007 * 9 7 5 12 12 H 1.48500 * 109.47073 * 239.99586 * 9 7 5 13 13 N 1.46900 * 109.47597 * 295.27672 * 3 2 1 14 14 C 1.46895 * 110.99780 * 273.29247 * 13 3 2 15 15 H 1.09001 * 109.47744 * 34.98614 * 14 13 3 16 16 C 1.52998 * 109.47131 * 274.98710 * 14 13 3 17 17 C 1.53006 * 109.47344 * 154.98847 * 14 13 3 18 18 C 1.53173 * 109.54336 * 299.55353 * 17 14 13 19 19 C 1.53086 * 109.16404 * 183.15043 * 18 17 14 20 20 O 1.42901 * 109.41534 * 57.60880 * 19 18 17 21 21 C 1.42898 * 114.09895 * 298.84182 * 20 19 18 22 22 C 1.53100 * 109.41402 * 61.15685 * 21 20 19 23 23 H 1.08997 * 109.47514 * 57.34620 * 1 2 3 24 24 H 1.09008 * 109.46692 * 297.34969 * 1 2 3 25 25 H 1.09004 * 109.47391 * 177.35673 * 1 2 3 26 26 H 1.08994 * 109.47837 * 120.00416 * 2 1 3 27 27 H 1.09005 * 109.46585 * 240.00416 * 2 1 3 28 28 H 0.96999 * 120.00170 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99794 * 37.24107 * 13 3 2 30 30 H 1.09002 * 109.47402 * 300.00202 * 16 14 13 31 31 H 1.09000 * 109.46951 * 59.99811 * 16 14 13 32 32 H 1.08994 * 109.47753 * 180.02562 * 16 14 13 33 33 H 1.09001 * 109.53865 * 59.81645 * 17 14 13 34 34 H 1.09001 * 109.52040 * 303.05748 * 18 17 14 35 35 H 1.09006 * 109.52347 * 63.24394 * 18 17 14 36 36 H 1.08996 * 109.48283 * 297.62241 * 19 18 17 37 37 H 1.09005 * 109.48218 * 177.59261 * 19 18 17 38 38 H 1.09001 * 109.48152 * 301.17512 * 21 20 19 39 39 H 1.08999 * 109.48325 * 181.14140 * 21 20 19 40 40 H 1.09000 * 109.52163 * 182.48715 * 22 21 20 41 41 H 1.08990 * 109.51990 * 62.29941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4437 0.0847 5 6 1.4443 2.1859 1.1678 6 1 0.8339 3.0602 0.9967 7 6 1.6786 1.7497 2.4546 8 7 2.4223 0.6851 2.6630 9 14 0.9408 2.6715 3.9021 10 1 0.1508 3.8257 3.4033 11 1 0.0542 1.7601 4.6694 12 1 2.0303 3.1609 4.7845 13 7 1.6457 2.1014 -1.2523 14 6 2.6364 1.8585 -2.3094 15 1 3.0488 0.8557 -2.1976 16 6 3.7626 2.8882 -2.1993 17 6 1.9632 1.9834 -3.6778 18 6 0.8425 0.9457 -3.7942 19 6 0.2274 1.0252 -5.1937 20 8 1.2459 0.8116 -6.1731 21 6 2.2966 1.7796 -6.1429 22 6 2.9949 1.7305 -4.7813 23 1 -0.3634 0.5545 -0.8652 24 1 -0.3633 0.4722 0.9129 25 1 -0.3634 -1.0266 -0.0474 26 1 1.8934 -0.5138 0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 2.5869 0.3780 3.5683 29 1 0.7264 1.8044 -1.5433 30 1 3.3504 3.8910 -2.3111 31 1 4.2422 2.7992 -1.2245 32 1 4.4975 2.7083 -2.9839 33 1 1.5477 2.9849 -3.7896 34 1 1.2514 -0.0516 -3.6320 35 1 0.0760 1.1521 -3.0471 36 1 -0.2169 2.0097 -5.3402 37 1 -0.5421 0.2600 -5.2966 38 1 1.8794 2.7740 -6.3017 39 1 3.0178 1.5580 -6.9296 40 1 3.7677 2.4981 -4.7404 41 1 3.4472 0.7491 -4.6392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234007797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:39 Heat of formation + Delta-G solvation = -84.624451 kcal Electronic energy + Delta-G solvation = -18682.281871 eV Core-core repulsion = 15981.505454 eV Total energy + Delta-G solvation = -2700.776417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65047 -38.58689 -36.10016 -33.75900 -32.35460 -32.05659 -29.85847 -28.05155 -26.11730 -25.12114 -24.20713 -22.32989 -21.03067 -20.66344 -18.22985 -17.27120 -16.93104 -16.82049 -16.50855 -15.65747 -15.36041 -15.05689 -14.96534 -14.46868 -14.28267 -14.14487 -13.85440 -13.27024 -13.05132 -12.85645 -12.67445 -12.53492 -12.47675 -12.33693 -12.18321 -12.01568 -11.73579 -11.50509 -11.44321 -11.33586 -11.07710 -10.88655 -10.42663 -10.36785 -8.88676 -8.04789 -6.13124 1.40955 1.43832 1.54947 2.45837 3.01032 3.23977 3.56876 3.75577 3.85953 4.00116 4.12970 4.32998 4.43190 4.48198 4.52095 4.56763 4.59676 4.71214 4.74550 4.78477 4.83032 4.87064 4.95067 5.00636 5.06193 5.15034 5.19698 5.24515 5.37030 5.43638 5.45395 5.52032 5.67646 5.74639 5.89227 6.30395 6.35268 6.73688 6.92992 7.02996 7.55232 9.00830 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038611 B = 0.005921 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.007631 B = 4727.660427 C = 5023.499418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C 0.224 3.776 4 H -0.006 1.006 5 C -0.496 4.496 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.684 5.684 14 C 0.089 3.911 15 H 0.013 0.987 16 C -0.131 4.131 17 C -0.081 4.081 18 C -0.153 4.153 19 C 0.066 3.934 20 O -0.404 6.404 21 C 0.060 3.940 22 C -0.146 4.146 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.332 0.668 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 1.615 -15.384 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.115 3.885 4 H 0.012 0.988 5 C -0.535 4.535 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.212 1.212 13 N -0.317 5.317 14 C -0.021 4.021 15 H 0.031 0.969 16 C -0.188 4.188 17 C -0.100 4.100 18 C -0.191 4.191 19 C -0.011 4.011 20 O -0.323 6.323 21 C -0.016 4.016 22 C -0.184 4.184 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.606 1.984 -15.193 15.406 hybrid contribution -0.164 -0.579 1.446 1.567 sum -1.770 1.405 -13.747 13.931 Atomic orbital electron populations 1.21448 0.95816 0.99317 1.00882 1.21934 0.96553 1.00218 0.98986 1.18916 0.93303 0.89183 0.87080 0.98832 1.21338 1.30113 1.11186 0.90855 0.93012 1.25610 0.95984 0.95902 1.01126 1.70030 1.40048 1.25190 1.21112 0.85609 0.78153 0.78832 0.79651 1.19298 1.20796 1.21154 1.60838 1.04769 1.62711 1.03409 1.21490 0.93597 0.96047 0.90967 0.96878 1.21760 0.97489 0.99303 1.00293 1.21272 0.95799 0.99534 0.93385 1.22265 0.98865 0.99254 0.98686 1.22608 0.89900 1.02373 0.86175 1.87880 1.35232 1.53241 1.55941 1.22721 0.89524 0.92422 0.96937 1.22250 0.98535 1.02793 0.94803 0.93164 0.93982 0.93823 0.92227 0.96184 0.93309 0.84663 0.92256 0.95605 0.90738 0.90192 0.92740 0.91004 0.91936 0.87916 0.92029 0.87375 0.89186 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.40 71.98 0.68 -4.21 16 2 C -0.14 -6.52 5.50 30.59 0.17 -6.35 16 3 C 0.22 11.23 2.13 44.17 0.09 11.33 16 4 H -0.01 -0.36 7.11 -2.39 -0.02 -0.38 16 5 C -0.50 -27.18 7.41 25.60 0.19 -26.99 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.64 5.28 84.65 0.45 1.08 16 8 N -0.92 -53.39 11.37 21.45 0.24 -53.15 16 9 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 13 N -0.68 -28.31 6.05 -473.30 -2.86 -31.18 16 14 C 0.09 3.10 2.03 44.92 0.09 3.19 16 15 H 0.01 0.51 7.23 -2.39 -0.02 0.50 16 16 C -0.13 -4.32 9.05 71.98 0.65 -3.67 16 17 C -0.08 -2.17 1.99 -10.68 -0.02 -2.19 16 18 C -0.15 -3.97 5.11 30.68 0.16 -3.81 16 19 C 0.07 1.42 6.84 72.01 0.49 1.91 16 20 O -0.40 -9.63 10.77 -148.98 -1.60 -11.24 16 21 C 0.06 1.16 6.84 72.02 0.49 1.65 16 22 C -0.15 -3.22 4.97 30.69 0.15 -3.07 16 23 H 0.05 1.85 6.03 -2.39 -0.01 1.84 16 24 H 0.04 1.93 7.17 -2.38 -0.02 1.92 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 3.24 6.21 -2.39 -0.01 3.22 16 27 H 0.02 0.88 7.51 -2.38 -0.02 0.86 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.33 12.82 4.03 -89.69 -0.36 12.46 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 32 H 0.07 1.97 6.51 -2.39 -0.02 1.95 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.93 6.08 -2.38 -0.01 1.92 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.74 6.62 -2.39 -0.02 1.72 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -60.91 306.95 2.03 -58.89 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.63 Total: 21.62 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.59 Total: -31.11 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.62 Total: -84.32 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.60 Total: -11.24 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -60.91 2.03 -58.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234007797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.736 kcal (2) G-P(sol) polarization free energy of solvation -60.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds