Wall clock time and date at job start Sun Mar 29 2020 23:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46934 * 2 1 4 4 H 1.09000 * 109.47521 * 305.86710 * 3 2 1 5 5 C 1.50702 * 109.47150 * 185.86593 * 3 2 1 6 6 H 1.07995 * 120.00034 * 244.51642 * 5 3 2 7 7 C 1.37879 * 119.99622 * 64.52666 * 5 3 2 8 8 N 1.31522 * 119.99523 * 192.16639 * 7 5 3 9 9 Si 1.86792 * 120.00395 * 12.15860 * 7 5 3 10 10 H 1.48504 * 109.47275 * 95.25264 * 9 7 5 11 11 H 1.48498 * 109.47294 * 335.25468 * 9 7 5 12 12 H 1.48497 * 109.47414 * 215.25449 * 9 7 5 13 13 N 1.46902 * 109.47321 * 65.86849 * 3 2 1 14 14 C 1.46904 * 111.00227 * 207.95239 * 13 3 2 15 15 H 1.09005 * 109.46654 * 323.38741 * 14 13 3 16 16 C 1.52997 * 109.47277 * 83.38236 * 14 13 3 17 17 C 1.52998 * 109.47265 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47059 * 300.00398 * 17 16 14 19 19 C 1.52998 * 109.47149 * 60.00176 * 18 17 16 20 20 H 1.08999 * 109.47718 * 59.99662 * 19 18 17 21 21 O 1.42900 * 109.47020 * 180.02562 * 19 18 17 22 22 C 1.42903 * 114.00132 * 269.99585 * 21 19 18 23 23 C 1.52991 * 109.47186 * 203.38679 * 14 13 3 24 24 H 1.08997 * 109.46630 * 299.26597 * 1 2 3 25 25 H 1.08998 * 109.47103 * 59.26740 * 1 2 3 26 26 H 1.08999 * 109.46929 * 179.27099 * 1 2 3 27 27 H 1.08997 * 109.46929 * 240.00544 * 2 1 3 28 28 H 1.08990 * 109.47148 * 120.00107 * 2 1 3 29 29 H 0.97000 * 119.99933 * 179.97438 * 8 7 5 30 30 H 1.00905 * 110.99498 * 331.89721 * 13 3 2 31 31 H 1.08997 * 109.47318 * 300.00122 * 16 14 13 32 32 H 1.08999 * 109.47191 * 60.00344 * 16 14 13 33 33 H 1.08997 * 109.47525 * 179.97438 * 17 16 14 34 34 H 1.09005 * 109.46649 * 60.00516 * 17 16 14 35 35 H 1.08999 * 109.47087 * 299.99452 * 18 17 16 36 36 H 1.09005 * 109.46875 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47358 * 179.97438 * 22 21 19 38 38 H 1.09000 * 109.46855 * 300.00269 * 22 21 19 39 39 H 1.09001 * 109.46573 * 59.99677 * 22 21 19 40 40 H 1.09005 * 109.47375 * 299.99621 * 23 14 13 41 41 H 1.09003 * 109.47389 * 59.99797 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5935 1.9858 -0.8328 5 6 3.5400 1.4450 -0.1452 6 1 4.1595 1.8193 0.6563 7 6 4.1214 0.9696 -1.3015 8 7 5.4170 0.7466 -1.3424 9 14 3.0692 0.6421 -2.8097 10 1 3.1060 1.8260 -3.7055 11 1 1.6688 0.3828 -2.3895 12 1 3.5963 -0.5427 -3.5333 13 7 1.6694 2.0929 1.2640 14 6 1.5198 3.5434 1.0856 15 1 2.2666 3.9012 0.3767 16 6 0.1199 3.8496 0.5496 17 6 -0.0361 5.3603 0.3644 18 6 0.1597 6.0620 1.7099 19 6 1.5596 5.7558 2.2458 20 1 2.3064 6.1139 1.5372 21 8 1.7423 6.4106 3.5027 22 6 2.2826 7.7294 3.3980 23 6 1.7158 4.2455 2.4307 24 1 -0.3632 0.5024 0.8965 25 1 -0.3633 0.5252 -0.8833 26 1 -0.3633 -1.0276 -0.0131 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8260 0.4118 -2.1558 30 1 0.8285 1.6871 1.6464 31 1 -0.0197 3.3494 -0.4087 32 1 -0.6269 3.4919 1.2584 33 1 -1.0333 5.5785 -0.0179 34 1 0.7106 5.7185 -0.3443 35 1 -0.5871 5.7038 2.4185 36 1 0.0489 7.1383 1.5779 37 1 2.3903 8.1581 4.3943 38 1 3.2581 7.6849 2.9137 39 1 1.6111 8.3511 2.8059 40 1 0.9691 3.8878 3.1396 41 1 2.7132 4.0274 2.8125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234009328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:11 Heat of formation + Delta-G solvation = -64.432659 kcal Electronic energy + Delta-G solvation = -18495.344921 eV Core-core repulsion = 15795.444085 eV Total energy + Delta-G solvation = -2699.900835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.21620 -37.16582 -35.27273 -32.24289 -31.56435 -29.98457 -28.27626 -26.43747 -26.32479 -22.64879 -22.17183 -21.32295 -19.88089 -19.45113 -16.70775 -16.53672 -15.58327 -15.08630 -14.80631 -14.61181 -14.18463 -13.91071 -13.47089 -13.16092 -12.85636 -12.61645 -12.47996 -12.18199 -11.83209 -11.67335 -11.64491 -11.02091 -10.91482 -10.84836 -10.73996 -10.43312 -10.24231 -10.22414 -10.04321 -9.95513 -9.41715 -9.37846 -9.09085 -8.46735 -7.29197 -6.02897 -3.96283 3.27314 3.37423 3.39336 3.81485 4.44545 4.82249 4.90296 5.12863 5.22176 5.25403 5.31856 5.35485 5.46234 5.51010 5.62099 5.67255 5.75551 5.80167 5.82861 5.88471 5.90359 6.04147 6.08832 6.20081 6.27886 6.34126 6.39481 6.53499 6.64030 6.68766 6.76784 6.82812 6.99389 7.26118 7.33679 7.80844 8.03755 8.32766 8.80815 9.13638 9.63113 11.10654 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.006715 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.861001 B = 4168.469535 C = 4554.727239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.194 3.806 4 H -0.002 1.002 5 C -0.498 4.498 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.858 3.142 10 H -0.284 1.284 11 H -0.251 1.251 12 H -0.288 1.288 13 N -0.669 5.669 14 C 0.098 3.902 15 H 0.084 0.916 16 C -0.151 4.151 17 C -0.113 4.113 18 C -0.137 4.137 19 C 0.089 3.911 20 H 0.061 0.939 21 O -0.387 6.387 22 C 0.031 3.969 23 C -0.100 4.100 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.261 0.739 30 H 0.320 0.680 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 9.547 4.510 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.085 3.915 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.685 3.315 10 H -0.211 1.211 11 H -0.175 1.175 12 H -0.214 1.214 13 N -0.299 5.299 14 C -0.013 4.013 15 H 0.103 0.897 16 C -0.191 4.191 17 C -0.151 4.151 18 C -0.174 4.174 19 C 0.031 3.969 20 H 0.079 0.921 21 O -0.306 6.306 22 C -0.065 4.065 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.420 9.404 4.791 14.831 hybrid contribution -1.214 0.033 -1.746 2.127 sum -11.634 9.437 3.045 15.286 Atomic orbital electron populations 1.21917 0.98613 1.00302 1.00429 1.22172 0.92474 1.00302 1.02049 1.19539 0.96592 0.89363 0.85963 0.98438 1.21038 0.89275 1.40871 1.02401 0.90270 1.24931 0.94685 0.95084 0.98496 1.69956 1.10462 1.45453 1.27727 0.87323 0.82368 0.77872 0.83941 1.21050 1.17525 1.21415 1.60546 1.38120 1.01218 1.30010 1.21399 0.94632 0.89808 0.95444 0.89740 1.22375 0.99428 0.95767 1.01488 1.21415 1.01351 0.95735 0.96588 1.22010 0.98080 0.99854 0.97493 1.22191 0.95721 0.94017 0.84955 0.92123 1.87901 1.84360 1.28307 1.29986 1.22742 0.97214 0.84467 1.02115 1.21521 1.03269 0.90915 0.98115 0.93440 0.93818 0.93811 0.92097 0.91859 0.92875 0.86229 0.91948 0.92304 0.92211 0.91868 0.91384 0.92475 0.90050 0.94017 0.94482 0.91880 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.75 37.16 0.36 -2.28 16 2 C -0.13 -2.78 4.69 -26.73 -0.13 -2.91 16 3 C 0.19 4.43 1.36 -68.86 -0.09 4.34 16 4 H 0.00 -0.04 5.74 -51.93 -0.30 -0.34 16 5 C -0.50 -13.88 9.10 -34.44 -0.31 -14.19 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.98 5.37 -17.82 -0.10 1.88 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.86 20.98 25.71 -169.99 -4.37 16.61 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.25 -5.71 5.31 56.52 0.30 -5.41 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.67 -13.37 6.05 -100.96 -0.61 -13.98 16 14 C 0.10 1.73 2.28 -67.72 -0.15 1.58 16 15 H 0.08 1.71 7.76 -51.93 -0.40 1.30 16 16 C -0.15 -2.25 5.15 -26.73 -0.14 -2.38 16 17 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 18 C -0.14 -1.70 5.54 -26.73 -0.15 -1.84 16 19 C 0.09 1.26 2.61 -26.76 -0.07 1.20 16 20 H 0.06 0.86 7.79 -51.93 -0.40 0.46 16 21 O -0.39 -5.56 10.35 -35.23 -0.36 -5.92 16 22 C 0.03 0.34 10.82 101.05 1.09 1.43 16 23 C -0.10 -1.61 5.17 -26.76 -0.14 -1.75 16 24 H 0.05 0.72 6.51 -51.93 -0.34 0.39 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.37 4.69 -51.93 -0.24 1.13 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 30 H 0.32 5.72 6.29 -39.29 -0.25 5.48 16 31 H 0.06 0.99 7.35 -51.93 -0.38 0.61 16 32 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -29.95 311.07 -7.30 -37.25 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.44 Total: 4.56 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 0.02 Total: -16.52 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.16 Total: -40.67 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.36 Total: -5.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.37 Total: 16.61 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.95 -7.30 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234009328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.184 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds