Wall clock time and date at job start Sun Mar 29 2020 23:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46934 * 2 1 4 4 H 1.09000 * 109.47521 * 305.86710 * 3 2 1 5 5 C 1.50702 * 109.47150 * 185.86593 * 3 2 1 6 6 H 1.07995 * 120.00034 * 244.51642 * 5 3 2 7 7 C 1.37879 * 119.99622 * 64.52666 * 5 3 2 8 8 N 1.31522 * 119.99523 * 192.16639 * 7 5 3 9 9 Si 1.86792 * 120.00395 * 12.15860 * 7 5 3 10 10 H 1.48504 * 109.47275 * 95.25264 * 9 7 5 11 11 H 1.48498 * 109.47294 * 335.25468 * 9 7 5 12 12 H 1.48497 * 109.47414 * 215.25449 * 9 7 5 13 13 N 1.46902 * 109.47321 * 65.86849 * 3 2 1 14 14 C 1.46904 * 111.00227 * 207.95239 * 13 3 2 15 15 H 1.09005 * 109.46654 * 323.38741 * 14 13 3 16 16 C 1.52997 * 109.47277 * 83.38236 * 14 13 3 17 17 C 1.52998 * 109.47265 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47059 * 300.00398 * 17 16 14 19 19 C 1.52998 * 109.47149 * 60.00176 * 18 17 16 20 20 H 1.08999 * 109.47718 * 59.99662 * 19 18 17 21 21 O 1.42900 * 109.47020 * 180.02562 * 19 18 17 22 22 C 1.42903 * 114.00132 * 269.99585 * 21 19 18 23 23 C 1.52991 * 109.47186 * 203.38679 * 14 13 3 24 24 H 1.08997 * 109.46630 * 299.26597 * 1 2 3 25 25 H 1.08998 * 109.47103 * 59.26740 * 1 2 3 26 26 H 1.08999 * 109.46929 * 179.27099 * 1 2 3 27 27 H 1.08997 * 109.46929 * 240.00544 * 2 1 3 28 28 H 1.08990 * 109.47148 * 120.00107 * 2 1 3 29 29 H 0.97000 * 119.99933 * 179.97438 * 8 7 5 30 30 H 1.00905 * 110.99498 * 331.89721 * 13 3 2 31 31 H 1.08997 * 109.47318 * 300.00122 * 16 14 13 32 32 H 1.08999 * 109.47191 * 60.00344 * 16 14 13 33 33 H 1.08997 * 109.47525 * 179.97438 * 17 16 14 34 34 H 1.09005 * 109.46649 * 60.00516 * 17 16 14 35 35 H 1.08999 * 109.47087 * 299.99452 * 18 17 16 36 36 H 1.09005 * 109.46875 * 179.97438 * 18 17 16 37 37 H 1.08997 * 109.47358 * 179.97438 * 22 21 19 38 38 H 1.09000 * 109.46855 * 300.00269 * 22 21 19 39 39 H 1.09001 * 109.46573 * 59.99677 * 22 21 19 40 40 H 1.09005 * 109.47375 * 299.99621 * 23 14 13 41 41 H 1.09003 * 109.47389 * 59.99797 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5935 1.9858 -0.8328 5 6 3.5400 1.4450 -0.1452 6 1 4.1595 1.8193 0.6563 7 6 4.1214 0.9696 -1.3015 8 7 5.4170 0.7466 -1.3424 9 14 3.0692 0.6421 -2.8097 10 1 3.1060 1.8260 -3.7055 11 1 1.6688 0.3828 -2.3895 12 1 3.5963 -0.5427 -3.5333 13 7 1.6694 2.0929 1.2640 14 6 1.5198 3.5434 1.0856 15 1 2.2666 3.9012 0.3767 16 6 0.1199 3.8496 0.5496 17 6 -0.0361 5.3603 0.3644 18 6 0.1597 6.0620 1.7099 19 6 1.5596 5.7558 2.2458 20 1 2.3064 6.1139 1.5372 21 8 1.7423 6.4106 3.5027 22 6 2.2826 7.7294 3.3980 23 6 1.7158 4.2455 2.4307 24 1 -0.3632 0.5024 0.8965 25 1 -0.3633 0.5252 -0.8833 26 1 -0.3633 -1.0276 -0.0131 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8260 0.4118 -2.1558 30 1 0.8285 1.6871 1.6464 31 1 -0.0197 3.3494 -0.4087 32 1 -0.6269 3.4919 1.2584 33 1 -1.0333 5.5785 -0.0179 34 1 0.7106 5.7185 -0.3443 35 1 -0.5871 5.7038 2.4185 36 1 0.0489 7.1383 1.5779 37 1 2.3903 8.1581 4.3943 38 1 3.2581 7.6849 2.9137 39 1 1.6111 8.3511 2.8059 40 1 0.9691 3.8878 3.1396 41 1 2.7132 4.0274 2.8125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234009328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:11 Heat of formation + Delta-G solvation = -85.241710 kcal Electronic energy + Delta-G solvation = -18496.247269 eV Core-core repulsion = 15795.444085 eV Total energy + Delta-G solvation = -2700.803184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43740 -38.54051 -36.68616 -34.27271 -33.03868 -31.15662 -29.80345 -28.14332 -27.29794 -24.39613 -23.32572 -22.59581 -21.56387 -20.80617 -18.81471 -17.70058 -16.87293 -16.52581 -16.18709 -15.95783 -15.67021 -15.30370 -14.80236 -14.68486 -14.32501 -14.11269 -13.74115 -13.53624 -13.36766 -13.10902 -12.68393 -12.63826 -12.46765 -12.20700 -12.12370 -11.95935 -11.69591 -11.59633 -11.45778 -11.40342 -11.19210 -11.05504 -10.64014 -10.39762 -8.92695 -8.25678 -6.24026 1.32618 1.36036 1.46021 2.36235 2.74802 3.07754 3.54369 3.78248 4.00457 4.06044 4.20993 4.25395 4.38115 4.42820 4.44283 4.50109 4.53893 4.55036 4.60122 4.62048 4.71761 4.84502 4.88665 4.99690 5.05264 5.11095 5.16130 5.19292 5.21117 5.24994 5.31841 5.44670 5.46143 5.54597 5.81746 6.14161 6.29996 6.59632 6.82476 7.03105 7.40036 8.92126 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.006715 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.861001 B = 4168.469535 C = 4554.727239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.202 3.798 4 H 0.000 1.000 5 C -0.502 4.502 6 H 0.025 0.975 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.926 3.074 10 H -0.282 1.282 11 H -0.219 1.219 12 H -0.288 1.288 13 N -0.683 5.683 14 C 0.099 3.901 15 H 0.048 0.952 16 C -0.143 4.143 17 C -0.109 4.109 18 C -0.128 4.128 19 C 0.091 3.909 20 H 0.053 0.947 21 O -0.407 6.407 22 C 0.024 3.976 23 C -0.094 4.094 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.263 0.737 30 H 0.335 0.665 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.775 10.262 4.071 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.093 3.907 4 H 0.017 0.983 5 C -0.541 4.541 6 H 0.043 0.957 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.750 3.250 10 H -0.208 1.208 11 H -0.141 1.141 12 H -0.214 1.214 13 N -0.315 5.315 14 C -0.011 4.011 15 H 0.066 0.934 16 C -0.182 4.182 17 C -0.147 4.147 18 C -0.166 4.166 19 C 0.033 3.967 20 H 0.071 0.929 21 O -0.326 6.326 22 C -0.072 4.072 23 C -0.132 4.132 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.032 10.134 4.377 17.854 hybrid contribution 0.029 -0.130 -1.462 1.468 sum -14.003 10.004 2.915 17.455 Atomic orbital electron populations 1.21828 0.94652 1.02234 1.01644 1.22056 0.95965 0.98126 1.00933 1.19300 0.93053 0.91090 0.87260 0.98299 1.21317 0.92000 1.39852 1.00899 0.95676 1.25816 0.95925 0.95012 1.01973 1.70123 1.12842 1.47429 1.28775 0.86216 0.82069 0.77561 0.79118 1.20809 1.14099 1.21385 1.60356 1.39499 1.02687 1.28922 1.21344 0.95892 0.88329 0.95539 0.93350 1.22260 0.97184 0.97550 1.01229 1.21412 1.02649 0.93927 0.96754 1.21941 0.96376 1.01087 0.97153 1.22107 0.97158 0.92382 0.85030 0.92920 1.87857 1.84748 1.30029 1.29979 1.22959 0.97374 0.83142 1.03679 1.21409 1.01659 0.92874 0.97269 0.91641 0.93211 0.91558 0.93514 0.92880 0.92845 0.84471 0.92652 0.90512 0.89601 0.92530 0.90777 0.90525 0.88233 0.94271 0.92736 0.91026 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.75 71.99 0.70 -3.70 16 2 C -0.13 -5.39 4.69 30.60 0.14 -5.25 16 3 C 0.20 9.22 1.36 44.17 0.06 9.28 16 4 H 0.00 -0.02 5.74 -2.39 -0.01 -0.04 16 5 C -0.50 -29.24 9.10 25.60 0.23 -29.01 16 6 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 7 C 0.01 0.54 5.37 84.65 0.45 1.00 16 8 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.93 43.62 25.71 68.60 1.76 45.38 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.22 -9.07 5.31 99.48 0.53 -8.54 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 N -0.68 -27.31 6.05 -473.32 -2.86 -30.17 16 14 C 0.10 3.51 2.28 44.91 0.10 3.61 16 15 H 0.05 2.04 7.76 -2.38 -0.02 2.02 16 16 C -0.14 -3.90 5.15 30.59 0.16 -3.74 16 17 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 18 C -0.13 -2.80 5.54 30.59 0.17 -2.63 16 19 C 0.09 2.52 2.61 30.58 0.08 2.60 16 20 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 21 O -0.41 -11.23 10.35 -148.98 -1.54 -12.77 16 22 C 0.02 0.49 10.82 113.37 1.23 1.72 16 23 C -0.09 -3.05 5.17 30.58 0.16 -2.90 16 24 H 0.06 1.73 6.51 -2.39 -0.02 1.72 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 2.01 4.69 -2.39 -0.01 2.00 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.34 11.45 6.29 -89.69 -0.56 10.89 16 31 H 0.05 1.60 7.35 -2.39 -0.02 1.59 16 32 H 0.08 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.42 7.87 -2.38 -0.02 1.40 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 0.79 8.09 -2.39 -0.02 0.77 16 39 H 0.05 0.90 7.87 -2.39 -0.02 0.88 16 40 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.24 311.07 1.56 -66.68 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.24 Total: 22.65 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.67 Total: -31.30 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.56 Total: -90.63 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.54 Total: -12.77 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.76 Total: 45.38 kcal Total: -68.24 1.56 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234009328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.565 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds