Wall clock time and date at job start Sun Mar 29 2020 23:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47253 * 2 1 4 4 H 1.08994 * 109.46909 * 54.91348 * 3 2 1 5 5 C 1.50696 * 109.47071 * 174.91699 * 3 2 1 6 6 H 1.07994 * 120.00284 * 119.99680 * 5 3 2 7 7 C 1.37881 * 120.00015 * 299.99817 * 5 3 2 8 8 N 1.31518 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00041 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47416 * 59.99932 * 9 7 5 11 11 H 1.48504 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47134 * 299.99807 * 9 7 5 13 13 N 1.46897 * 109.46689 * 294.91574 * 3 2 1 14 14 C 1.46899 * 110.99817 * 156.92223 * 13 3 2 15 15 H 1.09001 * 109.54457 * 33.73448 * 14 13 3 16 16 C 1.53174 * 109.54311 * 273.46714 * 14 13 3 17 17 C 1.53091 * 109.16394 * 297.11435 * 16 14 13 18 18 H 1.08995 * 109.48247 * 62.37358 * 17 16 14 19 19 C 1.53004 * 109.48228 * 182.39643 * 17 16 14 20 20 O 1.42904 * 109.41435 * 302.38725 * 17 16 14 21 21 C 1.42903 * 114.09528 * 61.15807 * 20 17 16 22 22 H 1.09010 * 109.47847 * 58.82519 * 21 20 17 23 23 C 1.52999 * 109.48110 * 178.85705 * 21 20 17 24 24 C 1.53084 * 109.41703 * 298.84303 * 21 20 17 25 25 H 1.08998 * 109.47487 * 295.49729 * 1 2 3 26 26 H 1.09004 * 109.47151 * 55.50311 * 1 2 3 27 27 H 1.09000 * 109.47100 * 175.49853 * 1 2 3 28 28 H 1.09003 * 109.47190 * 239.99570 * 2 1 3 29 29 H 1.09003 * 109.46946 * 119.99904 * 2 1 3 30 30 H 0.96997 * 120.00402 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99829 * 280.86912 * 13 3 2 32 32 H 1.09004 * 109.52442 * 57.01511 * 16 14 13 33 33 H 1.08996 * 109.52733 * 177.20649 * 16 14 13 34 34 H 1.08995 * 109.47140 * 59.99720 * 19 17 16 35 35 H 1.09002 * 109.47279 * 179.97438 * 19 17 16 36 36 H 1.09000 * 109.46826 * 299.99754 * 19 17 16 37 37 H 1.08999 * 109.47218 * 179.97438 * 23 21 20 38 38 H 1.09006 * 109.47159 * 299.94759 * 23 21 20 39 39 H 1.09002 * 109.46770 * 59.94207 * 23 21 20 40 40 H 1.09007 * 109.52211 * 297.70542 * 24 21 20 41 41 H 1.09000 * 109.52880 * 177.51594 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9819 0.8409 5 6 3.5417 1.4443 0.1259 6 1 4.1481 1.8884 -0.6496 7 6 4.1416 0.8790 1.2312 8 7 3.4031 0.3385 2.1758 9 14 6.0030 0.8818 1.3875 10 1 6.4976 2.2821 1.3879 11 1 6.3941 0.2179 2.6570 12 1 6.5971 0.1472 0.2418 13 7 1.6531 2.0986 -1.2561 14 6 1.6183 3.5587 -1.0984 15 1 2.3916 3.8680 -0.3951 16 6 0.2444 3.9846 -0.5721 17 6 -0.8254 3.6147 -1.6029 18 1 -0.8431 2.5331 -1.7363 19 6 -2.1939 4.0907 -1.1112 20 8 -0.5215 4.2438 -2.8495 21 6 0.7305 3.8474 -3.4131 22 1 0.7331 2.7687 -3.5702 23 6 0.9353 4.5588 -4.7521 24 6 1.8627 4.2266 -2.4551 25 1 -0.3634 0.4424 0.9275 26 1 -0.3634 0.5820 -0.8470 27 1 -0.3633 -1.0245 -0.0807 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8251 -0.0589 2.9536 31 1 2.2696 1.8308 -2.0087 32 1 0.0385 3.4706 0.3668 33 1 0.2351 5.0621 -0.4082 34 1 -2.1762 5.1723 -0.9783 35 1 -2.9554 3.8276 -1.8455 36 1 -2.4250 3.6114 -0.1599 37 1 1.8905 4.2567 -5.1816 38 1 0.1290 4.2887 -5.4341 39 1 0.9320 5.6374 -4.5947 40 1 1.8861 5.3091 -2.3291 41 1 2.8144 3.8857 -2.8627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245743527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:19 Heat of formation + Delta-G solvation = -72.616482 kcal Electronic energy + Delta-G solvation = -18886.487163 eV Core-core repulsion = 16186.231451 eV Total energy + Delta-G solvation = -2700.255713 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.34689 -36.04618 -33.43644 -33.22191 -31.53067 -30.07814 -28.43418 -26.08887 -25.79443 -22.80376 -21.91417 -21.42458 -19.57534 -18.86000 -16.62428 -16.04512 -15.33680 -14.89747 -14.71801 -14.04441 -14.01646 -13.18830 -12.96046 -12.88758 -12.51309 -12.30747 -11.99739 -11.75861 -11.66721 -11.48644 -11.35567 -11.25568 -11.08029 -10.87115 -10.71239 -10.51218 -10.32484 -9.97977 -9.90501 -9.60867 -9.39992 -9.15582 -8.81247 -8.38317 -7.25270 -6.01083 -4.14304 3.25902 3.31480 3.33625 4.07915 4.37532 5.08892 5.16779 5.23960 5.31098 5.41651 5.49819 5.55556 5.64675 5.78144 5.85766 5.91523 6.00576 6.09535 6.15402 6.25069 6.28481 6.37451 6.40022 6.49481 6.58158 6.60776 6.64740 6.71899 6.80735 7.12232 7.17193 7.43353 7.58732 7.75155 7.76503 8.07491 8.15391 8.32556 8.65137 8.98591 9.53423 10.98695 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.007372 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.642400 B = 3797.303694 C = 4366.684608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.088 3.912 15 H 0.052 0.948 16 C -0.131 4.131 17 C 0.096 3.904 18 H 0.073 0.927 19 C -0.143 4.143 20 O -0.388 6.388 21 C 0.095 3.905 22 H 0.065 0.935 23 C -0.144 4.144 24 C -0.148 4.148 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 5.869 -7.793 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.313 5.313 14 C -0.023 4.023 15 H 0.070 0.930 16 C -0.169 4.169 17 C 0.039 3.961 18 H 0.091 0.909 19 C -0.201 4.201 20 O -0.308 6.308 21 C 0.038 3.962 22 H 0.083 0.917 23 C -0.201 4.201 24 C -0.186 4.186 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.046 5.831 -7.573 11.874 hybrid contribution 2.368 -0.008 0.462 2.413 sum -4.678 5.823 -7.110 10.312 Atomic orbital electron populations 1.21727 0.99061 0.98445 1.00291 1.21493 0.92054 0.99340 1.01593 1.19142 0.92584 0.91101 0.86308 0.94928 1.21838 0.92880 1.38270 1.05506 0.93039 1.24927 0.97823 0.95010 0.95721 1.69863 1.34868 1.38204 1.09369 0.86735 0.86181 0.78146 0.77366 1.20461 1.21228 1.20325 1.60966 1.56515 1.04394 1.09460 1.21359 0.95879 0.90186 0.94860 0.93031 1.22126 0.95685 0.99873 0.99257 1.21967 0.93388 0.97439 0.83355 0.90887 1.21778 0.95927 1.01543 1.00818 1.87776 1.37336 1.68807 1.36872 1.21902 0.83702 0.98595 0.92027 0.91665 1.21782 1.01519 1.00926 0.95889 1.22383 0.98743 1.00710 0.96788 0.94577 0.93185 0.95710 0.95240 0.89234 0.92834 0.85681 0.91051 0.92529 0.92604 0.92558 0.91377 0.91519 0.92367 0.92404 0.91726 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 37.16 0.37 -2.41 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.22 5.17 1.80 -68.87 -0.12 5.04 16 4 H 0.03 0.87 7.22 -51.93 -0.38 0.50 16 5 C -0.55 -14.40 8.18 -34.44 -0.28 -14.69 16 6 H 0.05 1.35 7.77 -52.49 -0.41 0.95 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.68 -13.59 4.22 -100.77 -0.43 -14.02 16 14 C 0.09 1.61 2.65 -67.53 -0.18 1.44 16 15 H 0.05 1.09 7.56 -51.93 -0.39 0.70 16 16 C -0.13 -2.23 5.02 -26.59 -0.13 -2.37 16 17 C 0.10 1.52 3.10 -26.68 -0.08 1.44 16 18 H 0.07 1.27 6.98 -51.93 -0.36 0.91 16 19 C -0.14 -1.92 9.57 37.16 0.36 -1.56 16 20 O -0.39 -6.29 10.05 -35.23 -0.35 -6.64 16 21 C 0.10 1.42 3.10 -26.69 -0.08 1.34 16 22 H 0.07 1.03 7.71 -51.92 -0.40 0.63 16 23 C -0.14 -1.74 9.56 37.16 0.36 -1.39 16 24 C -0.15 -2.31 4.79 -26.59 -0.13 -2.44 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.96 6.87 -51.93 -0.36 0.60 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 6.51 8.00 -39.29 -0.31 6.20 16 32 H 0.07 1.31 7.50 -51.93 -0.39 0.92 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -26.93 316.31 -8.09 -35.03 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.51 Total: 5.51 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.17 Total: -16.49 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.20 Total: -38.13 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.35 Total: -6.64 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.93 -8.09 -35.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245743527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.588 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds