Wall clock time and date at job start Sun Mar 29 2020 23:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47253 * 2 1 4 4 H 1.08994 * 109.46909 * 54.91348 * 3 2 1 5 5 C 1.50696 * 109.47071 * 174.91699 * 3 2 1 6 6 H 1.07994 * 120.00284 * 119.99680 * 5 3 2 7 7 C 1.37881 * 120.00015 * 299.99817 * 5 3 2 8 8 N 1.31518 * 120.00103 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00041 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47416 * 59.99932 * 9 7 5 11 11 H 1.48504 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47134 * 299.99807 * 9 7 5 13 13 N 1.46897 * 109.46689 * 294.91574 * 3 2 1 14 14 C 1.46899 * 110.99817 * 156.92223 * 13 3 2 15 15 H 1.09001 * 109.54457 * 33.73448 * 14 13 3 16 16 C 1.53174 * 109.54311 * 273.46714 * 14 13 3 17 17 C 1.53091 * 109.16394 * 297.11435 * 16 14 13 18 18 H 1.08995 * 109.48247 * 62.37358 * 17 16 14 19 19 C 1.53004 * 109.48228 * 182.39643 * 17 16 14 20 20 O 1.42904 * 109.41435 * 302.38725 * 17 16 14 21 21 C 1.42903 * 114.09528 * 61.15807 * 20 17 16 22 22 H 1.09010 * 109.47847 * 58.82519 * 21 20 17 23 23 C 1.52999 * 109.48110 * 178.85705 * 21 20 17 24 24 C 1.53084 * 109.41703 * 298.84303 * 21 20 17 25 25 H 1.08998 * 109.47487 * 295.49729 * 1 2 3 26 26 H 1.09004 * 109.47151 * 55.50311 * 1 2 3 27 27 H 1.09000 * 109.47100 * 175.49853 * 1 2 3 28 28 H 1.09003 * 109.47190 * 239.99570 * 2 1 3 29 29 H 1.09003 * 109.46946 * 119.99904 * 2 1 3 30 30 H 0.96997 * 120.00402 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99829 * 280.86912 * 13 3 2 32 32 H 1.09004 * 109.52442 * 57.01511 * 16 14 13 33 33 H 1.08996 * 109.52733 * 177.20649 * 16 14 13 34 34 H 1.08995 * 109.47140 * 59.99720 * 19 17 16 35 35 H 1.09002 * 109.47279 * 179.97438 * 19 17 16 36 36 H 1.09000 * 109.46826 * 299.99754 * 19 17 16 37 37 H 1.08999 * 109.47218 * 179.97438 * 23 21 20 38 38 H 1.09006 * 109.47159 * 299.94759 * 23 21 20 39 39 H 1.09002 * 109.46770 * 59.94207 * 23 21 20 40 40 H 1.09007 * 109.52211 * 297.70542 * 24 21 20 41 41 H 1.09000 * 109.52880 * 177.51594 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9819 0.8409 5 6 3.5417 1.4443 0.1259 6 1 4.1481 1.8884 -0.6496 7 6 4.1416 0.8790 1.2312 8 7 3.4031 0.3385 2.1758 9 14 6.0030 0.8818 1.3875 10 1 6.4976 2.2821 1.3879 11 1 6.3941 0.2179 2.6570 12 1 6.5971 0.1472 0.2418 13 7 1.6531 2.0986 -1.2561 14 6 1.6183 3.5587 -1.0984 15 1 2.3916 3.8680 -0.3951 16 6 0.2444 3.9846 -0.5721 17 6 -0.8254 3.6147 -1.6029 18 1 -0.8431 2.5331 -1.7363 19 6 -2.1939 4.0907 -1.1112 20 8 -0.5215 4.2438 -2.8495 21 6 0.7305 3.8474 -3.4131 22 1 0.7331 2.7687 -3.5702 23 6 0.9353 4.5588 -4.7521 24 6 1.8627 4.2266 -2.4551 25 1 -0.3634 0.4424 0.9275 26 1 -0.3634 0.5820 -0.8470 27 1 -0.3633 -1.0245 -0.0807 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8251 -0.0589 2.9536 31 1 2.2696 1.8308 -2.0087 32 1 0.0385 3.4706 0.3668 33 1 0.2351 5.0621 -0.4082 34 1 -2.1762 5.1723 -0.9783 35 1 -2.9554 3.8276 -1.8455 36 1 -2.4250 3.6114 -0.1599 37 1 1.8905 4.2567 -5.1816 38 1 0.1290 4.2887 -5.4341 39 1 0.9320 5.6374 -4.5947 40 1 1.8861 5.3091 -2.3291 41 1 2.8144 3.8857 -2.8627 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245743527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:18 Heat of formation + Delta-G solvation = -87.889577 kcal Electronic energy + Delta-G solvation = -18887.149454 eV Core-core repulsion = 16186.231451 eV Total energy + Delta-G solvation = -2700.918004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69150 -37.75383 -35.03300 -34.50838 -33.43249 -31.49067 -29.82240 -27.76234 -27.25470 -24.64764 -23.24071 -22.62065 -21.41669 -20.33068 -18.65082 -17.27864 -16.83737 -16.60055 -16.28200 -15.63722 -15.41227 -14.73570 -14.58233 -14.42160 -13.81853 -13.52070 -13.40607 -13.20111 -13.03538 -12.94273 -12.79775 -12.74130 -12.61834 -12.56926 -12.52874 -12.09622 -11.74247 -11.55288 -11.46922 -11.36590 -11.15437 -10.85111 -10.45075 -10.22471 -9.01203 -8.05507 -6.27910 1.37210 1.37971 1.45179 2.38726 2.89913 3.13763 3.62667 3.86235 4.06769 4.10253 4.14431 4.40819 4.43809 4.58160 4.63483 4.70842 4.77754 4.81107 4.86271 4.89326 4.92116 4.95528 5.07347 5.11999 5.18761 5.19705 5.22882 5.31339 5.41654 5.42471 5.48633 5.53202 5.64336 5.79916 6.12597 6.21816 6.39236 6.50846 6.83245 7.02502 7.43654 8.90210 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.007372 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.642400 B = 3797.303694 C = 4366.684608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.227 3.773 4 H -0.001 1.001 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.085 3.915 15 H 0.018 0.982 16 C -0.126 4.126 17 C 0.099 3.901 18 H 0.058 0.942 19 C -0.139 4.139 20 O -0.392 6.392 21 C 0.093 3.907 22 H 0.056 0.944 23 C -0.138 4.138 24 C -0.140 4.140 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 6.516 -9.255 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.017 0.983 5 C -0.599 4.599 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.298 5.298 14 C -0.026 4.026 15 H 0.036 0.964 16 C -0.165 4.165 17 C 0.042 3.958 18 H 0.076 0.924 19 C -0.196 4.196 20 O -0.312 6.312 21 C 0.036 3.964 22 H 0.074 0.926 23 C -0.195 4.195 24 C -0.178 4.178 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.288 6.485 -9.051 13.308 hybrid contribution 2.444 -0.187 0.920 2.619 sum -4.843 6.298 -8.130 11.368 Atomic orbital electron populations 1.21576 0.96419 0.99844 1.00372 1.21352 0.94393 0.98469 0.99898 1.18868 0.91191 0.91320 0.86795 0.98297 1.22171 0.94308 1.37925 1.05459 0.93333 1.25646 1.01897 0.94872 0.95574 1.69996 1.36379 1.38852 1.09734 0.85780 0.81323 0.78097 0.77414 1.20221 1.20963 1.19692 1.60897 1.55851 1.05350 1.07657 1.21405 0.95802 0.89244 0.96114 0.96386 1.22073 0.95381 1.00192 0.98834 1.21927 0.94223 0.96669 0.83014 0.92426 1.21756 0.94500 1.01999 1.01356 1.87791 1.37902 1.68786 1.36713 1.22017 0.82811 0.98553 0.93053 0.92579 1.21760 1.02718 1.00841 0.94174 1.22327 0.99512 1.00895 0.95081 0.95194 0.92188 0.93754 0.95420 0.92288 0.92939 0.85535 0.92954 0.91502 0.91896 0.91405 0.90763 0.89926 0.91599 0.91939 0.90767 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.85 71.98 0.71 -4.25 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.70 16 3 C 0.23 11.10 1.80 44.17 0.08 11.18 16 4 H 0.00 -0.05 7.22 -2.39 -0.02 -0.07 16 5 C -0.56 -30.03 8.18 25.60 0.21 -29.82 16 6 H 0.05 2.57 7.77 -2.91 -0.02 2.55 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.99 11.29 21.45 0.24 -51.75 16 9 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.67 -26.76 4.22 -472.72 -2.00 -28.75 16 14 C 0.08 3.14 2.65 45.03 0.12 3.26 16 15 H 0.02 0.79 7.56 -2.39 -0.02 0.77 16 16 C -0.13 -4.29 5.02 30.68 0.15 -4.14 16 17 C 0.10 3.03 3.10 30.63 0.10 3.13 16 18 H 0.06 1.95 6.98 -2.39 -0.02 1.93 16 19 C -0.14 -3.45 9.57 71.98 0.69 -2.76 16 20 O -0.39 -11.92 10.05 -148.98 -1.50 -13.42 16 21 C 0.09 2.59 3.10 30.62 0.10 2.69 16 22 H 0.06 1.67 7.71 -2.38 -0.02 1.65 16 23 C -0.14 -2.94 9.56 71.98 0.69 -2.25 16 24 C -0.14 -4.19 4.79 30.68 0.15 -4.04 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 2.25 6.87 -2.39 -0.02 2.23 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 3.19 5.95 -2.39 -0.01 3.17 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.33 13.02 8.00 -89.69 -0.72 12.30 16 32 H 0.05 1.96 7.50 -2.38 -0.02 1.94 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 Total: -1.00 -57.64 316.31 2.63 -55.01 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.26 Total: 23.74 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.60 Total: -30.16 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.75 Total: -80.51 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.50 Total: -13.42 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -57.64 2.63 -55.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245743527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.881 kcal (2) G-P(sol) polarization free energy of solvation -57.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds