Wall clock time and date at job start Sun Mar 29 2020 23:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47399 * 2 1 4 4 H 1.08999 * 109.46665 * 305.64830 * 3 2 1 5 5 C 1.50697 * 109.47219 * 185.65767 * 3 2 1 6 6 H 1.08002 * 119.99598 * 239.99956 * 5 3 2 7 7 C 1.37875 * 120.00550 * 59.99308 * 5 3 2 8 8 N 1.31523 * 119.99641 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47100 * 90.00324 * 9 7 5 11 11 H 1.48502 * 109.46932 * 209.99911 * 9 7 5 12 12 H 1.48502 * 109.47234 * 330.00177 * 9 7 5 13 13 N 1.46896 * 109.47261 * 65.65120 * 3 2 1 14 14 C 1.46903 * 110.99839 * 209.26839 * 13 3 2 15 15 H 1.08994 * 109.54032 * 31.80292 * 14 13 3 16 16 C 1.53168 * 109.61932 * 271.57284 * 14 13 3 17 17 C 1.53094 * 109.16843 * 297.07231 * 16 14 13 18 18 H 1.08997 * 109.47730 * 62.37067 * 17 16 14 19 19 C 1.52994 * 109.48394 * 182.39577 * 17 16 14 20 20 O 1.42903 * 109.41447 * 302.39355 * 17 16 14 21 21 C 1.43037 * 114.13420 * 61.15254 * 20 17 16 22 22 H 1.08999 * 109.46243 * 58.81408 * 21 20 17 23 23 C 1.52996 * 109.56977 * 178.88943 * 21 20 17 24 24 C 1.53094 * 109.34734 * 298.88668 * 21 20 17 25 25 H 1.08996 * 109.47801 * 174.18783 * 1 2 3 26 26 H 1.08998 * 109.47190 * 294.18726 * 1 2 3 27 27 H 1.09002 * 109.47253 * 54.18710 * 1 2 3 28 28 H 1.08996 * 109.47394 * 239.99353 * 2 1 3 29 29 H 1.09004 * 109.46793 * 119.99569 * 2 1 3 30 30 H 0.97003 * 119.99724 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00190 * 333.23030 * 13 3 2 32 32 H 1.09000 * 109.52023 * 56.97651 * 16 14 13 33 33 H 1.09001 * 109.52585 * 177.16396 * 16 14 13 34 34 H 1.09005 * 109.47402 * 60.00160 * 19 17 16 35 35 H 1.09002 * 109.47171 * 179.97438 * 19 17 16 36 36 H 1.09001 * 109.47139 * 300.00354 * 19 17 16 37 37 H 1.08996 * 109.47241 * 179.91117 * 23 21 20 38 38 H 1.09008 * 109.47158 * 299.91469 * 23 21 20 39 39 H 1.09001 * 109.46856 * 59.90689 * 23 21 20 40 40 H 1.08996 * 109.51637 * 297.63883 * 24 21 20 41 41 H 1.08998 * 109.52499 * 177.51399 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 3.5404 1.4447 -0.1401 6 1 4.1541 1.8864 0.6312 7 6 4.1299 0.8830 -1.2527 8 7 3.3826 0.3455 -2.1921 9 14 5.9898 0.8852 -1.4259 10 1 6.5453 -0.3492 -0.8152 11 1 6.3528 0.9319 -2.8651 12 1 6.5499 2.0745 -0.7352 13 7 1.6649 2.0945 1.2618 14 6 1.4856 3.5404 1.0741 15 1 1.1159 3.7343 0.0673 16 6 2.8255 4.2551 1.2746 17 6 3.2981 4.0423 2.7151 18 1 3.4608 2.9789 2.8909 19 6 4.6063 4.8028 2.9406 20 8 2.3026 4.5277 3.6183 21 6 1.0405 3.8635 3.5095 22 1 1.1737 2.7978 3.6957 23 6 0.0662 4.4432 4.5369 24 6 0.4788 4.0692 2.1003 25 1 -0.3634 -1.0223 -0.1041 26 1 -0.3633 0.4210 0.9374 27 1 -0.3634 0.6013 -0.8334 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.7973 -0.0494 -2.9750 31 1 0.8348 1.6749 1.6529 32 1 3.5635 3.8455 0.5849 33 1 2.7014 5.3214 1.0858 34 1 4.4433 5.8662 2.7652 35 1 4.9424 4.6515 3.9664 36 1 5.3651 4.4329 2.2510 37 1 -0.8954 3.9371 4.4516 38 1 0.4663 4.2966 5.5402 39 1 -0.0664 5.5090 4.3508 40 1 0.3073 5.1318 1.9282 41 1 -0.4618 3.5276 2.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245743530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:21 Heat of formation + Delta-G solvation = -67.695916 kcal Electronic energy + Delta-G solvation = -18951.117734 eV Core-core repulsion = 16251.075393 eV Total energy + Delta-G solvation = -2700.042341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.29401 -36.15263 -33.40826 -33.13077 -31.67399 -29.88927 -28.32669 -26.40009 -25.67660 -22.81459 -21.91915 -21.34307 -19.65192 -18.88851 -16.33859 -15.94236 -15.30921 -14.91528 -14.78072 -14.07762 -13.87598 -13.27791 -13.02533 -12.89936 -12.50460 -12.35084 -11.96130 -11.81921 -11.65172 -11.55056 -11.42151 -11.15163 -11.05052 -10.85253 -10.63974 -10.43963 -10.26302 -9.88423 -9.84088 -9.63269 -9.45226 -9.08937 -8.76521 -8.32385 -7.21969 -5.96394 -3.99599 3.31794 3.38733 3.41542 4.14954 4.44252 5.06127 5.17974 5.30669 5.36799 5.46614 5.52397 5.60015 5.73483 5.81026 5.89160 5.99164 6.00100 6.12780 6.14600 6.20289 6.23282 6.29219 6.36558 6.39643 6.43577 6.59473 6.69694 6.78954 6.85375 6.95136 7.07548 7.19083 7.49160 7.77798 7.84520 7.93655 8.32605 8.41415 8.75896 9.07670 9.64833 11.09010 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.008819 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.608706 B = 3174.062715 C = 4162.949709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.487 4.487 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.094 3.906 15 H 0.039 0.961 16 C -0.134 4.134 17 C 0.097 3.903 18 H 0.075 0.925 19 C -0.142 4.142 20 O -0.390 6.390 21 C 0.096 3.904 22 H 0.064 0.936 23 C -0.144 4.144 24 C -0.152 4.152 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.317 0.683 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 5.878 8.305 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.526 4.526 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.016 4.016 15 H 0.057 0.943 16 C -0.172 4.172 17 C 0.040 3.960 18 H 0.093 0.907 19 C -0.200 4.200 20 O -0.310 6.310 21 C 0.038 3.962 22 H 0.082 0.918 23 C -0.201 4.201 24 C -0.190 4.190 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.947 6.001 8.465 11.102 hybrid contribution 0.035 -0.269 -1.010 1.046 sum -3.912 5.732 7.455 10.185 Atomic orbital electron populations 1.21873 0.99681 0.99660 0.99444 1.21808 0.91164 1.00640 1.03039 1.19248 0.95542 0.89801 0.84222 0.97924 1.21241 0.91238 1.36061 1.04071 0.91814 1.24970 0.97883 0.95793 0.96002 1.69876 1.34581 1.39656 1.09588 0.86605 0.86065 0.78407 0.76961 1.20842 1.21516 1.19936 1.60773 1.38420 1.00839 1.31268 1.21428 0.94023 0.90216 0.95977 0.94318 1.22195 0.98871 0.98401 0.97766 1.21962 0.86941 0.98522 0.88584 0.90674 1.21765 0.96184 1.00342 1.01669 1.87786 1.20883 1.62200 1.60153 1.21877 0.84063 0.96602 0.93624 0.91773 1.21781 0.98031 1.01413 0.98883 1.22451 0.98635 1.01403 0.96510 0.94444 0.94741 0.93943 0.88266 0.94140 0.93160 0.86512 0.88786 0.93179 0.92769 0.92726 0.91174 0.91638 0.92299 0.92396 0.91583 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.66 37.15 0.36 -2.47 16 2 C -0.13 -2.94 5.33 -26.73 -0.14 -3.08 16 3 C 0.22 5.25 2.03 -68.87 -0.14 5.11 16 4 H 0.00 0.09 7.31 -51.93 -0.38 -0.29 16 5 C -0.49 -12.86 7.51 -34.44 -0.26 -13.12 16 6 H 0.06 1.70 6.94 -52.49 -0.36 1.33 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.15 11.29 55.43 0.63 -24.52 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.75 4.98 -100.77 -0.50 -14.25 16 14 C 0.09 1.75 2.86 -67.53 -0.19 1.56 16 15 H 0.04 0.78 7.33 -51.93 -0.38 0.40 16 16 C -0.13 -2.50 4.85 -26.60 -0.13 -2.63 16 17 C 0.10 1.71 3.11 -26.69 -0.08 1.63 16 18 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 19 C -0.14 -2.18 9.56 37.15 0.36 -1.83 16 20 O -0.39 -6.69 10.05 -35.23 -0.35 -7.05 16 21 C 0.10 1.46 3.11 -26.68 -0.08 1.38 16 22 H 0.06 1.03 7.66 -51.93 -0.40 0.64 16 23 C -0.14 -1.74 9.57 37.16 0.36 -1.39 16 24 C -0.15 -2.32 4.77 -26.59 -0.13 -2.45 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.32 5.94 6.01 -39.29 -0.24 5.70 16 32 H 0.09 2.00 6.08 -51.93 -0.32 1.68 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -27.24 312.47 -8.06 -35.30 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.34 Total: 5.62 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.18 Total: -15.94 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.12 Total: -38.77 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.35 Total: -7.05 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.24 -8.06 -35.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245743530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.395 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds