Wall clock time and date at job start Sun Mar 29 2020 23:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47399 * 2 1 4 4 H 1.08999 * 109.46665 * 305.64830 * 3 2 1 5 5 C 1.50697 * 109.47219 * 185.65767 * 3 2 1 6 6 H 1.08002 * 119.99598 * 239.99956 * 5 3 2 7 7 C 1.37875 * 120.00550 * 59.99308 * 5 3 2 8 8 N 1.31523 * 119.99641 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47100 * 90.00324 * 9 7 5 11 11 H 1.48502 * 109.46932 * 209.99911 * 9 7 5 12 12 H 1.48502 * 109.47234 * 330.00177 * 9 7 5 13 13 N 1.46896 * 109.47261 * 65.65120 * 3 2 1 14 14 C 1.46903 * 110.99839 * 209.26839 * 13 3 2 15 15 H 1.08994 * 109.54032 * 31.80292 * 14 13 3 16 16 C 1.53168 * 109.61932 * 271.57284 * 14 13 3 17 17 C 1.53094 * 109.16843 * 297.07231 * 16 14 13 18 18 H 1.08997 * 109.47730 * 62.37067 * 17 16 14 19 19 C 1.52994 * 109.48394 * 182.39577 * 17 16 14 20 20 O 1.42903 * 109.41447 * 302.39355 * 17 16 14 21 21 C 1.43037 * 114.13420 * 61.15254 * 20 17 16 22 22 H 1.08999 * 109.46243 * 58.81408 * 21 20 17 23 23 C 1.52996 * 109.56977 * 178.88943 * 21 20 17 24 24 C 1.53094 * 109.34734 * 298.88668 * 21 20 17 25 25 H 1.08996 * 109.47801 * 174.18783 * 1 2 3 26 26 H 1.08998 * 109.47190 * 294.18726 * 1 2 3 27 27 H 1.09002 * 109.47253 * 54.18710 * 1 2 3 28 28 H 1.08996 * 109.47394 * 239.99353 * 2 1 3 29 29 H 1.09004 * 109.46793 * 119.99569 * 2 1 3 30 30 H 0.97003 * 119.99724 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00190 * 333.23030 * 13 3 2 32 32 H 1.09000 * 109.52023 * 56.97651 * 16 14 13 33 33 H 1.09001 * 109.52585 * 177.16396 * 16 14 13 34 34 H 1.09005 * 109.47402 * 60.00160 * 19 17 16 35 35 H 1.09002 * 109.47171 * 179.97438 * 19 17 16 36 36 H 1.09001 * 109.47139 * 300.00354 * 19 17 16 37 37 H 1.08996 * 109.47241 * 179.91117 * 23 21 20 38 38 H 1.09008 * 109.47158 * 299.91469 * 23 21 20 39 39 H 1.09001 * 109.46856 * 59.90689 * 23 21 20 40 40 H 1.08996 * 109.51637 * 297.63883 * 24 21 20 41 41 H 1.08998 * 109.52499 * 177.51399 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 3.5404 1.4447 -0.1401 6 1 4.1541 1.8864 0.6312 7 6 4.1299 0.8830 -1.2527 8 7 3.3826 0.3455 -2.1921 9 14 5.9898 0.8852 -1.4259 10 1 6.5453 -0.3492 -0.8152 11 1 6.3528 0.9319 -2.8651 12 1 6.5499 2.0745 -0.7352 13 7 1.6649 2.0945 1.2618 14 6 1.4856 3.5404 1.0741 15 1 1.1159 3.7343 0.0673 16 6 2.8255 4.2551 1.2746 17 6 3.2981 4.0423 2.7151 18 1 3.4608 2.9789 2.8909 19 6 4.6063 4.8028 2.9406 20 8 2.3026 4.5277 3.6183 21 6 1.0405 3.8635 3.5095 22 1 1.1737 2.7978 3.6957 23 6 0.0662 4.4432 4.5369 24 6 0.4788 4.0692 2.1003 25 1 -0.3634 -1.0223 -0.1041 26 1 -0.3633 0.4210 0.9374 27 1 -0.3634 0.6013 -0.8334 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.7973 -0.0494 -2.9750 31 1 0.8348 1.6749 1.6529 32 1 3.5635 3.8455 0.5849 33 1 2.7014 5.3214 1.0858 34 1 4.4433 5.8662 2.7652 35 1 4.9424 4.6515 3.9664 36 1 5.3651 4.4329 2.2510 37 1 -0.8954 3.9371 4.4516 38 1 0.4663 4.2966 5.5402 39 1 -0.0664 5.5090 4.3508 40 1 0.3073 5.1318 1.9282 41 1 -0.4618 3.5276 2.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245743530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:20 Heat of formation + Delta-G solvation = -83.721600 kcal Electronic energy + Delta-G solvation = -18951.812660 eV Core-core repulsion = 16251.075393 eV Total energy + Delta-G solvation = -2700.737267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69340 -37.85594 -35.01124 -34.47835 -33.56139 -31.29355 -29.77204 -28.19097 -27.06810 -24.65447 -23.29128 -22.61255 -21.47014 -20.39877 -18.36325 -17.26716 -16.82367 -16.54897 -16.40447 -15.80339 -15.30291 -14.79758 -14.54655 -14.50486 -13.99583 -13.55187 -13.43505 -13.23642 -13.05307 -12.89555 -12.77894 -12.73192 -12.63272 -12.57073 -12.45303 -11.96461 -11.70984 -11.59409 -11.56214 -11.38232 -10.98018 -10.92538 -10.39944 -10.19647 -8.95856 -8.03608 -6.13161 1.40768 1.42452 1.51420 2.44942 2.89918 3.21666 3.59638 3.86600 4.06291 4.11744 4.13663 4.40795 4.45421 4.50092 4.56763 4.60999 4.70137 4.74171 4.79914 4.84859 4.88270 4.93322 5.03293 5.10362 5.14528 5.19064 5.23283 5.28988 5.34935 5.40278 5.44110 5.46248 5.62249 5.79261 5.93857 6.40205 6.51505 6.56382 6.99805 7.02727 7.54847 8.99730 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.008819 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.608706 B = 3174.062715 C = 4162.949709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.228 3.772 4 H -0.033 1.033 5 C -0.495 4.495 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.675 5.675 14 C 0.090 3.910 15 H 0.018 0.982 16 C -0.131 4.131 17 C 0.103 3.897 18 H 0.050 0.950 19 C -0.139 4.139 20 O -0.394 6.394 21 C 0.090 3.910 22 H 0.054 0.946 23 C -0.137 4.137 24 C -0.142 4.142 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.257 0.743 31 H 0.327 0.673 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 6.630 9.919 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.534 4.534 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.564 5.564 9 Si 0.774 3.226 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.193 1.193 13 N -0.307 5.307 14 C -0.021 4.021 15 H 0.036 0.964 16 C -0.169 4.169 17 C 0.045 3.955 18 H 0.068 0.932 19 C -0.196 4.196 20 O -0.314 6.314 21 C 0.032 3.968 22 H 0.072 0.928 23 C -0.194 4.194 24 C -0.180 4.180 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.675 6.760 10.100 13.021 hybrid contribution 0.229 -0.486 -1.500 1.594 sum -4.446 6.274 8.599 11.536 Atomic orbital electron populations 1.21736 0.96367 1.00998 1.00433 1.21636 0.94163 0.99307 1.01163 1.18994 0.94195 0.90336 0.84542 1.01519 1.21498 0.92678 1.35450 1.03789 0.92564 1.25652 1.01720 0.95767 0.95919 1.70009 1.35976 1.40457 1.09948 0.85714 0.81569 0.78512 0.76807 1.20489 1.21412 1.19320 1.60644 1.39144 1.01819 1.29126 1.21480 0.95144 0.89210 0.96219 0.96407 1.22120 0.98055 0.98835 0.97923 1.21816 0.88233 0.97518 0.87921 0.93192 1.21735 0.94835 1.00636 1.02374 1.87796 1.21522 1.62325 1.59786 1.22087 0.83925 0.96328 0.94434 0.92839 1.21760 0.97976 1.01765 0.97882 1.22385 0.98146 1.02104 0.95332 0.92581 0.92277 0.94708 0.91550 0.94487 0.93350 0.85361 0.92047 0.91939 0.91618 0.91458 0.91558 0.89456 0.91840 0.91866 0.90448 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.66 71.98 0.70 -4.38 16 2 C -0.12 -5.76 5.33 30.59 0.16 -5.60 16 3 C 0.23 11.16 2.03 44.17 0.09 11.25 16 4 H -0.03 -1.82 7.31 -2.39 -0.02 -1.84 16 5 C -0.50 -26.82 7.51 25.60 0.19 -26.63 16 6 H 0.06 3.07 6.94 -2.91 -0.02 3.05 16 7 C 0.01 0.38 5.29 84.65 0.45 0.83 16 8 N -0.92 -53.14 11.29 21.45 0.24 -52.89 16 9 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -27.25 4.98 -472.73 -2.36 -29.61 16 14 C 0.09 3.32 2.86 45.03 0.13 3.45 16 15 H 0.02 0.74 7.33 -2.39 -0.02 0.72 16 16 C -0.13 -4.88 4.85 30.68 0.15 -4.74 16 17 C 0.10 3.55 3.11 30.62 0.10 3.65 16 18 H 0.05 1.98 7.75 -2.39 -0.02 1.96 16 19 C -0.14 -4.09 9.56 71.98 0.69 -3.40 16 20 O -0.39 -12.78 10.05 -148.98 -1.50 -14.28 16 21 C 0.09 2.51 3.11 30.62 0.10 2.61 16 22 H 0.05 1.62 7.66 -2.39 -0.02 1.60 16 23 C -0.14 -2.83 9.57 71.98 0.69 -2.15 16 24 C -0.14 -4.02 4.77 30.69 0.15 -3.88 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.86 6.67 -2.39 -0.02 1.85 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 3.55 5.94 -2.39 -0.01 3.54 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.47 16 31 H 0.33 11.87 6.01 -89.69 -0.54 11.33 16 32 H 0.06 2.69 6.08 -2.39 -0.01 2.67 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 Total: -1.00 -59.43 312.47 2.44 -57.00 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.44 Total: 22.68 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.58 Total: -28.99 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.11 Total: -82.50 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.50 Total: -14.28 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -59.43 2.44 -57.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245743530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.725 kcal (2) G-P(sol) polarization free energy of solvation -59.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds