Wall clock time and date at job start Sun Mar 29 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 H 1.09003 * 109.50591 * 305.08686 * 3 2 1 5 5 C 1.53096 * 109.50784 * 185.00287 * 3 2 1 6 6 N 1.47008 * 109.26158 * 183.17049 * 5 3 2 7 7 C 1.46902 * 111.00281 * 182.38946 * 6 5 3 8 8 C 1.52997 * 109.47070 * 170.00080 * 7 6 5 9 9 C 1.53003 * 109.46867 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47038 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00159 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.47016 * 110.74976 * 58.61298 * 6 5 3 19 19 C 1.53093 * 109.26097 * 301.38327 * 18 6 5 20 20 H 1.08999 * 109.54609 * 176.80727 * 19 18 6 21 21 C 1.53003 * 109.50817 * 296.91617 * 19 18 6 22 22 O 1.43008 * 109.54415 * 65.19269 * 3 2 1 23 23 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46981 * 299.99942 * 1 2 3 25 25 H 1.09000 * 109.47471 * 60.00104 * 1 2 3 26 26 H 1.09000 * 109.47626 * 239.99761 * 2 1 3 27 27 H 1.08996 * 109.47421 * 119.99370 * 2 1 3 28 28 H 1.08999 * 109.50721 * 63.23338 * 5 3 2 29 29 H 1.09001 * 109.53966 * 303.13083 * 5 3 2 30 30 H 1.08996 * 109.46854 * 49.99893 * 7 6 5 31 31 H 1.09004 * 109.47013 * 289.99886 * 7 6 5 32 32 H 1.08996 * 109.47435 * 60.00168 * 8 7 6 33 33 H 1.08996 * 109.47029 * 300.00046 * 8 7 6 34 34 H 1.09003 * 109.46825 * 60.00325 * 9 8 7 35 35 H 1.08996 * 109.47396 * 299.99898 * 9 8 7 36 36 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 37 37 H 1.08999 * 109.50872 * 61.32313 * 18 6 5 38 38 H 1.09011 * 109.50698 * 181.44850 * 18 6 5 39 39 H 1.08998 * 109.47283 * 179.77722 * 21 19 18 40 40 H 1.08997 * 109.47013 * 299.78400 * 21 19 18 41 41 H 1.09006 * 109.46900 * 59.78344 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6044 1.9826 -0.8408 5 6 3.5657 1.4454 -0.1258 6 7 4.0560 2.8292 -0.0489 7 6 5.5138 2.8817 -0.2225 8 6 5.9559 4.3372 -0.3861 9 6 7.4743 4.3919 -0.5662 10 6 7.9098 5.8256 -0.7267 11 1 7.1769 6.6186 -0.7030 12 6 9.2438 6.1251 -0.9048 13 7 10.1363 5.1596 -0.9342 14 14 9.7837 7.9023 -1.1030 15 1 9.7654 8.2677 -2.5423 16 1 11.1598 8.0642 -0.5687 17 1 8.8552 8.7881 -0.3557 18 6 3.6536 3.4546 1.2193 19 6 2.1270 3.4317 1.3316 20 1 1.8260 3.8429 2.2952 21 6 1.5192 4.2708 0.2058 22 8 1.6663 2.0821 1.2233 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.8528 1.0103 -1.0831 29 1 3.9995 0.8599 0.6848 30 1 5.7946 2.3147 -1.1100 31 1 5.9997 2.4506 0.6529 32 1 5.6751 4.9042 0.5015 33 1 5.4700 4.7683 -1.2613 34 1 7.7555 3.8248 -1.4537 35 1 7.9598 3.9609 0.3093 36 1 9.8559 4.2368 -0.8309 37 1 4.0882 2.9015 2.0519 38 1 4.0050 4.4863 1.2440 39 1 0.4322 4.2509 0.2840 40 1 1.8707 5.2992 0.2888 41 1 1.8217 3.8600 -0.7575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247739193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:04 Heat of formation + Delta-G solvation = -71.906719 kcal Electronic energy + Delta-G solvation = -17984.918067 eV Core-core repulsion = 15284.693132 eV Total energy + Delta-G solvation = -2700.224935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02421 -36.35006 -34.41901 -33.84182 -31.46006 -31.03500 -28.39944 -26.68218 -25.04891 -23.46512 -22.59383 -21.46821 -20.12590 -19.46002 -16.86059 -16.58679 -16.19753 -15.30210 -14.87022 -14.60418 -14.07466 -13.80762 -13.77526 -13.70405 -13.37699 -12.92220 -12.37880 -12.11451 -11.92129 -11.75321 -11.54941 -11.43948 -11.22596 -11.20423 -11.08092 -10.75044 -10.54513 -10.26253 -10.11637 -9.77149 -9.74088 -9.47298 -8.51588 -8.30497 -8.17505 -6.34394 -4.02950 3.44555 3.48285 3.64030 3.67544 3.94841 4.56479 4.67451 4.81182 4.93762 5.01674 5.09847 5.19189 5.20466 5.35128 5.40813 5.43225 5.57715 5.61698 5.68630 5.74711 5.77261 5.83184 5.89720 5.91048 5.95490 6.09390 6.14568 6.18485 6.33054 6.55168 6.60525 6.95402 7.15280 7.22717 7.24614 7.43982 7.56975 8.25009 8.49191 8.91043 9.69422 11.06370 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047300 B = 0.004244 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.829184 B = 6595.399092 C = 6961.374789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.069 0.931 5 C 0.022 3.978 6 N -0.533 5.533 7 C 0.055 3.945 8 C -0.097 4.097 9 C 0.008 3.992 10 C -0.599 4.599 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.915 5.915 14 Si 1.072 2.928 15 H -0.288 1.288 16 H -0.285 1.285 17 H -0.289 1.289 18 C 0.021 3.979 19 C 0.091 3.909 20 H 0.102 0.898 21 C -0.174 4.174 22 O -0.378 6.378 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.006 0.994 35 H 0.004 0.996 36 H 0.268 0.732 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.317 -7.995 2.756 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.087 0.913 5 C -0.106 4.106 6 N -0.258 5.258 7 C -0.072 4.072 8 C -0.134 4.134 9 C -0.029 4.029 10 C -0.638 4.638 11 H 0.067 0.933 12 C -0.191 4.191 13 N -0.552 5.552 14 Si 0.900 3.100 15 H -0.214 1.214 16 H -0.210 1.210 17 H -0.215 1.215 18 C -0.107 4.107 19 C 0.033 3.967 20 H 0.119 0.881 21 C -0.231 4.231 22 O -0.297 6.297 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.312 -6.853 2.291 18.759 hybrid contribution -0.680 -1.311 0.697 1.633 sum -17.992 -8.163 2.988 19.982 Atomic orbital electron populations 1.21690 0.95163 1.01309 1.02298 1.21524 0.96760 0.94464 1.02624 1.22188 0.92915 0.93619 0.87959 0.91337 1.22793 0.95773 0.90370 1.01696 1.62268 1.14042 1.16098 1.33371 1.22325 0.84772 1.00032 1.00039 1.21504 0.98673 0.92406 1.00867 1.19207 0.90275 0.97719 0.95719 1.22078 0.95140 0.92349 1.54212 0.93302 1.25867 0.93167 1.06058 0.93970 1.70754 1.36469 1.01214 1.46735 0.83509 0.75751 0.74086 0.76642 1.21448 1.21025 1.21495 1.22825 0.95729 1.01438 0.90732 1.22257 0.92448 0.82506 0.99494 0.88064 1.22266 1.00135 1.00508 1.00230 1.87984 1.76973 1.26086 1.38695 0.92914 0.91987 0.92896 0.90627 0.91336 0.90015 0.94403 0.91199 0.95346 0.93323 0.92418 0.97534 0.97764 0.92143 0.94386 0.88984 0.92742 0.91587 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 3 C 0.09 1.08 2.40 -26.68 -0.06 1.01 16 4 H 0.07 0.82 6.49 -51.93 -0.34 0.49 16 5 C 0.02 0.29 4.93 -3.72 -0.02 0.27 16 6 N -0.53 -8.17 4.09 -234.31 -0.96 -9.13 16 7 C 0.06 0.98 4.96 -3.82 -0.02 0.96 16 8 C -0.10 -2.04 5.09 -26.73 -0.14 -2.18 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.60 -17.46 9.11 -34.44 -0.31 -17.77 16 11 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 12 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 13 N -0.92 -28.55 13.65 55.43 0.76 -27.79 16 14 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.02 0.30 4.85 -3.71 -0.02 0.28 16 19 C 0.09 1.13 3.92 -26.68 -0.10 1.02 16 20 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 21 C -0.17 -2.04 8.88 37.16 0.33 -1.71 16 22 O -0.38 -4.95 9.83 -35.23 -0.35 -5.29 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.22 8.04 -51.93 -0.42 0.81 16 31 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.05 1.02 6.52 -51.93 -0.34 0.68 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 35 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 36 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.38 6.38 -51.92 -0.33 1.05 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.93 6.13 -51.93 -0.32 0.62 16 LS Contribution 318.14 15.07 4.79 4.79 Total: -1.00 -31.09 318.14 -8.73 -39.82 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.55 Total: -3.15 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.35 Total: -19.91 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.20 Total: -36.92 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.35 Total: -5.29 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.09 -8.73 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247739193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.089 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds