Wall clock time and date at job start Sun Mar 29 2020 22:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 H 1.09003 * 109.50591 * 305.08686 * 3 2 1 5 5 C 1.53096 * 109.50784 * 185.00287 * 3 2 1 6 6 N 1.47008 * 109.26158 * 183.17049 * 5 3 2 7 7 C 1.46902 * 111.00281 * 182.38946 * 6 5 3 8 8 C 1.52997 * 109.47070 * 170.00080 * 7 6 5 9 9 C 1.53003 * 109.46867 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47038 * 180.02562 * 9 8 7 11 11 H 1.08006 * 120.00159 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.47016 * 110.74976 * 58.61298 * 6 5 3 19 19 C 1.53093 * 109.26097 * 301.38327 * 18 6 5 20 20 H 1.08999 * 109.54609 * 176.80727 * 19 18 6 21 21 C 1.53003 * 109.50817 * 296.91617 * 19 18 6 22 22 O 1.43008 * 109.54415 * 65.19269 * 3 2 1 23 23 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46981 * 299.99942 * 1 2 3 25 25 H 1.09000 * 109.47471 * 60.00104 * 1 2 3 26 26 H 1.09000 * 109.47626 * 239.99761 * 2 1 3 27 27 H 1.08996 * 109.47421 * 119.99370 * 2 1 3 28 28 H 1.08999 * 109.50721 * 63.23338 * 5 3 2 29 29 H 1.09001 * 109.53966 * 303.13083 * 5 3 2 30 30 H 1.08996 * 109.46854 * 49.99893 * 7 6 5 31 31 H 1.09004 * 109.47013 * 289.99886 * 7 6 5 32 32 H 1.08996 * 109.47435 * 60.00168 * 8 7 6 33 33 H 1.08996 * 109.47029 * 300.00046 * 8 7 6 34 34 H 1.09003 * 109.46825 * 60.00325 * 9 8 7 35 35 H 1.08996 * 109.47396 * 299.99898 * 9 8 7 36 36 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 37 37 H 1.08999 * 109.50872 * 61.32313 * 18 6 5 38 38 H 1.09011 * 109.50698 * 181.44850 * 18 6 5 39 39 H 1.08998 * 109.47283 * 179.77722 * 21 19 18 40 40 H 1.08997 * 109.47013 * 299.78400 * 21 19 18 41 41 H 1.09006 * 109.46900 * 59.78344 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6044 1.9826 -0.8408 5 6 3.5657 1.4454 -0.1258 6 7 4.0560 2.8292 -0.0489 7 6 5.5138 2.8817 -0.2225 8 6 5.9559 4.3372 -0.3861 9 6 7.4743 4.3919 -0.5662 10 6 7.9098 5.8256 -0.7267 11 1 7.1769 6.6186 -0.7030 12 6 9.2438 6.1251 -0.9048 13 7 10.1363 5.1596 -0.9342 14 14 9.7837 7.9023 -1.1030 15 1 9.7654 8.2677 -2.5423 16 1 11.1598 8.0642 -0.5687 17 1 8.8552 8.7881 -0.3557 18 6 3.6536 3.4546 1.2193 19 6 2.1270 3.4317 1.3316 20 1 1.8260 3.8429 2.2952 21 6 1.5192 4.2708 0.2058 22 8 1.6663 2.0821 1.2233 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.8528 1.0103 -1.0831 29 1 3.9995 0.8599 0.6848 30 1 5.7946 2.3147 -1.1100 31 1 5.9997 2.4506 0.6529 32 1 5.6751 4.9042 0.5015 33 1 5.4700 4.7683 -1.2613 34 1 7.7555 3.8248 -1.4537 35 1 7.9598 3.9609 0.3093 36 1 9.8559 4.2368 -0.8309 37 1 4.0882 2.9015 2.0519 38 1 4.0050 4.4863 1.2440 39 1 0.4322 4.2509 0.2840 40 1 1.8707 5.2992 0.2888 41 1 1.8217 3.8600 -0.7575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247739193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:04 Heat of formation + Delta-G solvation = -90.907618 kcal Electronic energy + Delta-G solvation = -17985.742008 eV Core-core repulsion = 15284.693132 eV Total energy + Delta-G solvation = -2701.048876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08848 -37.71380 -35.83510 -35.27869 -33.21457 -32.06512 -29.60165 -28.15331 -26.49276 -24.86841 -23.96348 -22.75240 -21.64605 -20.49651 -18.96164 -17.60121 -17.39145 -16.54535 -16.12612 -15.69810 -15.65109 -15.36874 -15.08706 -14.92615 -14.64662 -14.36134 -13.63372 -13.43060 -13.09799 -13.01477 -12.88141 -12.77061 -12.55408 -12.48667 -12.09958 -11.98625 -11.92780 -11.87068 -11.73449 -11.52219 -11.16747 -10.75807 -10.56428 -10.47585 -9.42476 -8.71130 -6.41460 1.51549 1.61065 1.78941 2.54911 2.67198 2.81276 3.14042 3.70393 3.81337 3.89884 4.02502 4.09571 4.16140 4.21581 4.34650 4.40171 4.42499 4.48529 4.54356 4.65896 4.68389 4.76738 4.83624 4.85939 4.88746 4.97150 5.00470 5.09047 5.10523 5.25903 5.36596 5.38943 5.45642 5.48452 5.87483 5.95532 6.01687 6.16995 6.24426 6.56185 7.40797 8.69849 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047300 B = 0.004244 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.829184 B = 6595.399092 C = 6961.374789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.093 3.907 4 H 0.069 0.931 5 C 0.021 3.979 6 N -0.536 5.536 7 C 0.067 3.933 8 C -0.081 4.081 9 C 0.009 3.991 10 C -0.618 4.618 11 H 0.050 0.950 12 C -0.041 4.041 13 N -0.939 5.939 14 Si 1.121 2.879 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.019 3.981 19 C 0.092 3.908 20 H 0.119 0.881 21 C -0.168 4.168 22 O -0.386 6.386 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.049 0.951 33 H 0.053 0.947 34 H -0.010 1.010 35 H -0.014 1.014 36 H 0.255 0.745 37 H 0.031 0.969 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 -7.609 2.625 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.035 3.965 4 H 0.087 0.913 5 C -0.107 4.107 6 N -0.260 5.260 7 C -0.060 4.060 8 C -0.119 4.119 9 C -0.028 4.028 10 C -0.656 4.656 11 H 0.069 0.931 12 C -0.238 4.238 13 N -0.576 5.576 14 Si 0.942 3.058 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.109 4.109 19 C 0.035 3.965 20 H 0.137 0.863 21 C -0.225 4.225 22 O -0.305 6.305 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.008 0.992 35 H 0.004 0.996 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.861 -6.489 2.163 20.063 hybrid contribution -0.231 -1.480 0.748 1.674 sum -19.092 -7.968 2.911 20.892 Atomic orbital electron populations 1.21662 0.94363 1.02181 1.01928 1.21550 0.97406 0.92896 1.03255 1.22282 0.91681 0.94956 0.87584 0.91296 1.22903 0.96872 0.88854 1.02074 1.62223 1.11986 1.17747 1.34049 1.22049 0.86663 0.97417 0.99909 1.21252 0.95063 0.94927 1.00624 1.19150 0.93586 0.96089 0.93998 1.22515 0.95569 0.93711 1.53829 0.93128 1.27504 0.93671 1.09744 0.92881 1.70893 1.37035 1.01031 1.48665 0.82890 0.75813 0.69283 0.77808 1.19654 1.20755 1.19314 1.22876 0.97404 1.00636 0.89962 1.22329 0.90783 0.82654 1.00760 0.86303 1.22206 1.00958 1.00241 0.99126 1.87988 1.76892 1.26333 1.39336 0.91465 0.93099 0.92491 0.89046 0.91670 0.89021 0.94862 0.90992 0.95982 0.93223 0.92807 0.99210 0.99602 0.93579 0.95114 0.89850 0.91333 0.91453 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.81 71.98 0.71 -1.49 16 2 C -0.11 -1.94 5.65 30.59 0.17 -1.76 16 3 C 0.09 2.03 2.40 30.63 0.07 2.11 16 4 H 0.07 1.53 6.49 -2.39 -0.02 1.51 16 5 C 0.02 0.53 4.93 86.31 0.43 0.95 16 6 N -0.54 -16.00 4.09 -895.22 -3.66 -19.66 16 7 C 0.07 2.38 4.96 86.30 0.43 2.81 16 8 C -0.08 -3.44 5.09 30.59 0.16 -3.28 16 9 C 0.01 0.50 4.28 29.85 0.13 0.63 16 10 C -0.62 -36.27 9.11 25.60 0.23 -36.04 16 11 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 12 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 13 N -0.94 -59.41 13.65 21.45 0.29 -59.12 16 14 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.02 0.55 4.85 86.31 0.42 0.96 16 19 C 0.09 2.15 3.92 30.63 0.12 2.27 16 20 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 21 C -0.17 -3.64 8.88 71.98 0.64 -3.00 16 22 O -0.39 -9.44 9.83 -148.98 -1.46 -10.91 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.89 7.83 -2.38 -0.02 0.87 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 31 H 0.02 0.80 8.12 -2.38 -0.02 0.78 16 32 H 0.05 2.08 6.52 -2.39 -0.02 2.07 16 33 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 34 H -0.01 -0.59 8.01 -2.39 -0.02 -0.61 16 35 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 36 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 2.46 6.38 -2.38 -0.02 2.44 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.44 6.13 -2.38 -0.01 1.43 16 Total: -1.00 -66.17 318.14 2.24 -63.93 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.06 Total: 10.48 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.96 Total: -37.81 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -3.37 Total: -78.78 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.46 Total: -10.91 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -66.17 2.24 -63.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247739193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.978 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds