Wall clock time and date at job start Sun Mar 29 2020 23:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47483 * 2 1 4 4 H 1.09009 * 109.46941 * 54.87897 * 3 2 1 5 5 C 1.50697 * 109.47386 * 174.88018 * 3 2 1 6 6 H 1.08000 * 120.00110 * 120.00302 * 5 3 2 7 7 C 1.37879 * 119.99999 * 300.00078 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99885 * 0.02562 * 7 5 3 10 10 H 1.48489 * 109.47318 * 90.00251 * 9 7 5 11 11 H 1.48508 * 109.46969 * 210.00044 * 9 7 5 12 12 H 1.48503 * 109.47008 * 329.99794 * 9 7 5 13 13 N 1.46897 * 109.47144 * 294.88355 * 3 2 1 14 14 C 1.46897 * 111.00284 * 167.15322 * 13 3 2 15 15 C 1.46906 * 110.99885 * 291.10267 * 13 3 2 16 16 C 1.52995 * 109.46980 * 164.02295 * 15 13 3 17 17 H 1.08997 * 109.48313 * 59.98397 * 16 15 13 18 18 C 1.53097 * 109.47711 * 180.02562 * 16 15 13 19 19 C 1.53184 * 109.16333 * 177.60586 * 18 16 15 20 20 C 1.53179 * 109.03509 * 303.01992 * 19 18 16 21 21 C 1.53094 * 109.16160 * 56.97864 * 20 19 18 22 22 O 1.42904 * 109.42490 * 302.38348 * 21 20 19 23 23 H 1.09001 * 109.46962 * 295.19610 * 1 2 3 24 24 H 1.08998 * 109.46539 * 55.19698 * 1 2 3 25 25 H 1.09002 * 109.46958 * 175.19088 * 1 2 3 26 26 H 1.09003 * 109.47240 * 239.99681 * 2 1 3 27 27 H 1.09009 * 109.47039 * 119.99996 * 2 1 3 28 28 H 0.97009 * 120.00156 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47043 * 183.95483 * 14 13 3 30 30 H 1.09009 * 109.47027 * 303.94840 * 14 13 3 31 31 H 1.08997 * 109.47444 * 63.94710 * 14 13 3 32 32 H 1.09003 * 109.46786 * 44.02468 * 15 13 3 33 33 H 1.08999 * 109.47117 * 284.02850 * 15 13 3 34 34 H 1.09002 * 109.52265 * 57.70109 * 18 16 15 35 35 H 1.08997 * 109.57487 * 297.53624 * 18 16 15 36 36 H 1.08998 * 109.54193 * 183.15266 * 19 18 16 37 37 H 1.09001 * 109.54031 * 62.88492 * 19 18 16 38 38 H 1.09004 * 109.52058 * 297.07640 * 20 19 18 39 39 H 1.08997 * 109.57402 * 176.91969 * 20 19 18 40 40 H 1.09001 * 109.48107 * 62.37718 * 21 20 19 41 41 H 1.09002 * 109.47360 * 182.39842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6038 1.9821 0.8406 5 6 3.5417 1.4443 0.1268 6 1 4.1486 1.8884 -0.6484 7 6 4.1409 0.8791 1.2325 8 7 5.4513 0.8812 1.3434 9 14 3.0913 0.1105 2.5730 10 1 2.8711 -1.3257 2.2670 11 1 3.7860 0.2373 3.8795 12 1 1.7825 0.8091 2.6386 13 7 1.6539 2.0984 -1.2564 14 6 1.8518 3.5516 -1.1741 15 6 2.3894 1.5306 -2.3943 16 6 1.7000 1.9338 -3.6993 17 1 1.6851 3.0206 -3.7819 18 6 2.4659 1.3417 -4.8853 19 6 1.7366 1.6994 -6.1840 20 6 0.2962 1.1838 -6.1064 21 6 -0.3858 1.7820 -4.8732 22 8 0.3598 1.4376 -3.7037 23 1 -0.3633 0.4375 0.9299 24 1 -0.3632 0.5866 -0.8439 25 1 -0.3633 -1.0241 -0.0862 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8901 28 1 5.8729 0.4833 2.1212 29 1 1.4929 4.0197 -2.0907 30 1 1.2965 3.9463 -0.3231 31 1 2.9127 3.7673 -1.0472 32 1 2.4038 0.4438 -2.3118 33 1 3.4116 1.9088 -2.3914 34 1 2.5157 0.2578 -4.7822 35 1 3.4754 1.7522 -4.9097 36 1 2.2455 1.2339 -7.0281 37 1 1.7300 2.7818 -6.3123 38 1 0.3022 0.0966 -6.0278 39 1 -0.2470 1.4812 -7.0033 40 1 -0.4277 2.8668 -4.9712 41 1 -1.3976 1.3853 -4.7892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251303096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:32 Heat of formation + Delta-G solvation = -50.778818 kcal Electronic energy + Delta-G solvation = -18883.988757 eV Core-core repulsion = 16184.679996 eV Total energy + Delta-G solvation = -2699.308760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21481 -37.15632 -33.37322 -33.03328 -31.82260 -31.00832 -27.26859 -26.79913 -24.54240 -23.56595 -22.28273 -21.30112 -20.02953 -19.02581 -16.76039 -16.06427 -15.70537 -15.12337 -14.61751 -14.44350 -14.05561 -13.86378 -13.41990 -12.75617 -12.67858 -12.50516 -12.37992 -11.97513 -11.69875 -11.60590 -11.34879 -11.10253 -11.00662 -10.86325 -10.71228 -10.55853 -10.37693 -10.12490 -9.72558 -9.56006 -9.44772 -9.16275 -9.01881 -8.53251 -7.07077 -6.09615 -4.09882 3.29427 3.39821 3.43082 4.16446 4.40965 4.75900 4.88856 4.97828 5.06228 5.22936 5.34499 5.38804 5.59131 5.64022 5.79241 5.86077 5.95539 5.97546 6.08731 6.11552 6.14997 6.19301 6.24229 6.32594 6.37652 6.44938 6.55914 6.68995 6.71134 6.79396 6.95615 7.07165 7.23706 7.32745 7.59612 7.68262 8.17610 8.24086 8.48748 8.91992 9.54800 11.03124 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033070 B = 0.007008 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.496032 B = 3994.353829 C = 4308.620905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.180 3.820 4 H 0.037 0.963 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.900 5.900 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.520 5.520 14 C 0.033 3.967 15 C 0.072 3.928 16 C 0.096 3.904 17 H 0.049 0.951 18 C -0.152 4.152 19 C -0.120 4.120 20 C -0.156 4.156 21 C 0.059 3.941 22 O -0.355 6.355 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 1.607 -11.978 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C 0.072 3.928 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.188 1.188 13 N -0.243 5.243 14 C -0.116 4.116 15 C -0.056 4.056 16 C 0.038 3.962 17 H 0.067 0.933 18 C -0.190 4.190 19 C -0.157 4.157 20 C -0.194 4.194 21 C -0.019 4.019 22 O -0.273 6.273 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.715 1.367 -11.773 15.325 hybrid contribution 0.686 -0.198 0.640 0.958 sum -9.029 1.170 -11.133 14.382 Atomic orbital electron populations 1.21739 0.97299 0.99549 1.01564 1.21865 0.94220 0.99153 1.00223 1.19734 0.94350 0.90805 0.87878 0.94544 1.21668 0.90719 1.38898 1.07035 0.90664 1.24982 0.94723 0.95326 0.97868 1.69917 1.08916 1.45219 1.29688 0.86839 0.80738 0.79893 0.80694 1.20531 1.22721 1.18846 1.62275 1.55382 1.02697 1.03934 1.22208 0.99659 0.89864 0.99881 1.21972 0.94473 1.01106 0.88085 1.22265 0.82428 0.96537 0.95003 0.93278 1.22201 0.99591 1.02335 0.94880 1.21562 0.95637 1.00721 0.97809 1.22199 0.96624 1.01695 0.98854 1.22477 0.95420 0.98292 0.85700 1.88118 1.24022 1.76656 1.38522 0.94474 0.91031 0.95018 0.92378 0.93882 0.92720 0.93641 0.92680 0.95190 0.90279 0.92877 0.91011 0.91063 0.91945 0.92202 0.91242 0.91638 0.93997 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.86 37.16 0.37 -2.45 16 2 C -0.12 -2.63 4.88 -26.73 -0.13 -2.76 16 3 C 0.18 4.28 1.28 -68.87 -0.09 4.19 16 4 H 0.04 0.92 7.02 -51.92 -0.36 0.55 16 5 C -0.54 -14.93 7.86 -34.44 -0.27 -15.20 16 6 H 0.08 2.22 6.24 -52.49 -0.33 1.90 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.89 22.22 24.41 -169.99 -4.15 18.07 16 10 H -0.28 -6.84 6.83 56.52 0.39 -6.45 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.52 -10.84 3.89 -236.28 -0.92 -11.76 16 14 C 0.03 0.63 9.15 60.06 0.55 1.18 16 15 C 0.07 1.41 3.70 -3.82 -0.01 1.40 16 16 C 0.10 1.54 2.64 -26.68 -0.07 1.47 16 17 H 0.05 0.78 6.77 -51.93 -0.35 0.43 16 18 C -0.15 -2.07 5.42 -26.59 -0.14 -2.21 16 19 C -0.12 -1.34 6.03 -26.54 -0.16 -1.50 16 20 C -0.16 -1.69 6.14 -26.59 -0.16 -1.85 16 21 C 0.06 0.73 6.84 37.21 0.25 0.99 16 22 O -0.35 -5.87 10.27 -35.23 -0.36 -6.23 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.40 7.63 -51.93 -0.40 1.01 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.30 6.24 -51.93 -0.32 0.98 16 27 H 0.04 1.03 3.21 -51.92 -0.17 0.86 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.04 0.76 6.71 -51.93 -0.35 0.41 16 30 H 0.05 1.02 8.03 -51.92 -0.42 0.61 16 31 H 0.03 0.62 7.41 -51.93 -0.39 0.23 16 32 H 0.08 1.65 6.04 -51.93 -0.31 1.34 16 33 H 0.05 1.12 6.61 -51.93 -0.34 0.77 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 303.87 15.07 4.58 4.58 Total: -1.00 -29.67 303.87 -7.19 -36.87 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.15 Total: -0.22 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 0.03 Total: -14.76 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.15 Total: -38.32 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.36 Total: -6.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.15 Total: 18.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.67 -7.19 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251303096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.911 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds