Wall clock time and date at job start Sun Mar 29 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47200 * 2 1 4 4 H 1.09008 * 109.46771 * 303.10749 * 3 2 1 5 5 C 1.50698 * 109.47276 * 183.11412 * 3 2 1 6 6 H 1.08003 * 120.00064 * 239.99689 * 5 3 2 7 7 C 1.37880 * 120.00234 * 59.99737 * 5 3 2 8 8 N 1.31519 * 119.99454 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00125 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47339 * 89.99700 * 9 7 5 11 11 H 1.48504 * 109.46944 * 209.99741 * 9 7 5 12 12 H 1.48501 * 109.46957 * 329.99139 * 9 7 5 13 13 N 1.46902 * 109.47374 * 63.10787 * 3 2 1 14 14 C 1.46900 * 110.99806 * 194.87437 * 13 3 2 15 15 C 1.46897 * 110.99741 * 70.92438 * 13 3 2 16 16 C 1.53000 * 109.46939 * 201.13970 * 15 13 3 17 17 H 1.08996 * 109.48309 * 53.22753 * 16 15 13 18 18 C 1.53091 * 109.47986 * 173.25010 * 16 15 13 19 19 C 1.53173 * 109.21497 * 177.57020 * 18 16 15 20 20 C 1.53194 * 109.03472 * 303.11229 * 19 18 16 21 21 C 1.53093 * 109.20854 * 56.88427 * 20 19 18 22 22 O 1.42902 * 109.41490 * 302.42560 * 21 20 19 23 23 H 1.09005 * 109.47033 * 64.73834 * 1 2 3 24 24 H 1.09003 * 109.47374 * 184.73541 * 1 2 3 25 25 H 1.08999 * 109.47290 * 304.73413 * 1 2 3 26 26 H 1.08997 * 109.47176 * 239.99112 * 2 1 3 27 27 H 1.09000 * 109.46839 * 119.99455 * 2 1 3 28 28 H 0.97001 * 119.99521 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47473 * 295.26566 * 14 13 3 30 30 H 1.08995 * 109.47563 * 55.26607 * 14 13 3 31 31 H 1.09001 * 109.47097 * 175.27215 * 14 13 3 32 32 H 1.09001 * 109.47322 * 81.13632 * 15 13 3 33 33 H 1.09003 * 109.47198 * 321.13484 * 15 13 3 34 34 H 1.08995 * 109.52293 * 297.50435 * 18 16 15 35 35 H 1.09003 * 109.52355 * 57.63235 * 18 16 15 36 36 H 1.09001 * 109.54483 * 62.91597 * 19 18 16 37 37 H 1.09003 * 109.54540 * 183.18632 * 19 18 16 38 38 H 1.08997 * 109.46682 * 296.98230 * 20 19 18 39 39 H 1.08994 * 109.57857 * 176.85188 * 20 19 18 40 40 H 1.08999 * 109.47746 * 182.44768 * 21 20 19 41 41 H 1.09000 * 109.49128 * 62.41753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6318 1.9721 -0.8609 5 6 3.5450 1.4431 -0.0772 6 1 4.1260 1.8964 0.7124 7 6 4.1803 0.8652 -1.1558 8 7 3.4728 0.3129 -2.1171 9 14 6.0458 0.8655 -1.2511 10 1 6.5750 -0.3594 -0.5995 11 1 6.4687 0.8911 -2.6744 12 1 6.5768 2.0652 -0.5554 13 7 1.6126 2.1130 1.2352 14 6 1.7685 3.5695 1.1245 15 6 2.3448 1.5920 2.3973 16 6 1.5549 1.8904 3.6733 17 1 0.5370 1.5156 3.5667 18 6 2.2297 1.2038 4.8636 19 6 1.4694 1.5558 6.1459 20 6 1.4273 3.0795 6.2994 21 6 0.7835 3.6936 5.0535 22 8 1.5225 3.3017 3.8949 23 1 -0.3633 0.4386 -0.9294 24 1 -0.3634 -1.0242 0.0848 25 1 -0.3634 0.5855 0.8445 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9197 -0.0933 -2.8761 29 1 2.8258 3.8153 1.0247 30 1 1.2281 3.9272 0.2481 31 1 1.3674 4.0468 2.0186 32 1 3.3226 2.0703 2.4550 33 1 2.4729 0.5146 2.2929 34 1 2.2159 0.1238 4.7170 35 1 3.2609 1.5471 4.9457 36 1 0.4525 1.1681 6.0851 37 1 1.9781 1.1160 7.0039 38 1 2.4419 3.4615 6.4111 39 1 0.8403 3.3418 7.1796 40 1 0.7907 4.7802 5.1389 41 1 -0.2446 3.3427 4.9649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251303099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:34 Heat of formation + Delta-G solvation = -60.061049 kcal Electronic energy + Delta-G solvation = -18798.630408 eV Core-core repulsion = 16098.919140 eV Total energy + Delta-G solvation = -2699.711268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21809 -36.86981 -33.44483 -32.92324 -31.46198 -30.81018 -26.87078 -26.72025 -24.17595 -23.73004 -22.32621 -21.10986 -20.03024 -18.81783 -16.45267 -16.00379 -15.65552 -14.96353 -14.50694 -14.39365 -13.95192 -13.74911 -13.29735 -12.79661 -12.54841 -12.43896 -12.13318 -11.81120 -11.36084 -11.22989 -11.06735 -11.01718 -10.94129 -10.79376 -10.65105 -10.49272 -10.35139 -9.94405 -9.85781 -9.56375 -9.39139 -9.13116 -8.84826 -8.32140 -7.02733 -5.94161 -4.07178 3.28824 3.36135 3.39618 4.14755 4.43218 4.83877 4.89390 4.98690 5.10330 5.29733 5.42809 5.47883 5.63161 5.71314 5.86032 5.89541 5.98386 6.07549 6.11534 6.19979 6.34736 6.40459 6.46946 6.52737 6.53752 6.73569 6.82084 6.85878 7.04271 7.18387 7.23427 7.44704 7.64454 7.66328 7.81768 8.07947 8.22594 8.43492 8.56294 9.04343 9.60297 11.04949 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.006916 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.203021 B = 4047.429106 C = 4408.750814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.210 3.790 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.536 5.536 14 C 0.035 3.965 15 C 0.076 3.924 16 C 0.095 3.905 17 H 0.059 0.941 18 C -0.151 4.151 19 C -0.120 4.120 20 C -0.155 4.155 21 C 0.059 3.941 22 O -0.369 6.369 23 H 0.037 0.963 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 2.592 13.165 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.104 3.896 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.259 5.259 14 C -0.114 4.114 15 C -0.052 4.052 16 C 0.037 3.963 17 H 0.077 0.923 18 C -0.189 4.189 19 C -0.157 4.157 20 C -0.193 4.193 21 C -0.019 4.019 22 O -0.288 6.288 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.181 2.530 12.906 14.135 hybrid contribution 1.884 -0.075 -0.035 1.886 sum -3.297 2.455 12.871 13.512 Atomic orbital electron populations 1.21720 0.98952 0.98386 1.00585 1.21576 0.92158 0.99286 1.01689 1.19321 0.92743 0.91110 0.86431 0.94564 1.21806 0.92775 1.37252 1.06179 0.92548 1.24920 0.97827 0.95159 0.95585 1.69884 1.34848 1.37987 1.09787 0.86695 0.86393 0.78342 0.77177 1.20729 1.21228 1.20094 1.62351 1.55159 1.03941 1.04475 1.22302 0.99023 0.89594 1.00473 1.21914 0.94540 1.00504 0.88288 1.22366 0.99171 0.80555 0.94214 0.92300 1.22187 1.00433 1.01165 0.95108 1.21564 1.00580 0.95658 0.97931 1.22183 1.01980 0.96427 0.98692 1.22468 0.94534 0.99346 0.85512 1.88039 1.73919 1.23311 1.43489 0.94405 0.95718 0.93110 0.89113 0.95115 0.92978 0.96246 0.93653 0.91395 0.94364 0.89720 0.90983 0.91330 0.92066 0.92016 0.91382 0.91612 0.89668 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.84 37.16 0.37 -2.50 16 2 C -0.11 -2.59 5.21 -26.73 -0.14 -2.73 16 3 C 0.21 5.26 1.69 -68.87 -0.12 5.15 16 4 H 0.04 1.01 7.91 -51.92 -0.41 0.60 16 5 C -0.54 -14.65 7.31 -34.44 -0.25 -14.90 16 6 H 0.06 1.55 6.14 -52.48 -0.32 1.23 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.12 11.30 55.43 0.63 -24.49 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.54 -11.68 3.89 -236.28 -0.92 -12.59 16 14 C 0.03 0.73 9.02 60.06 0.54 1.27 16 15 C 0.08 1.52 3.66 -3.83 -0.01 1.51 16 16 C 0.09 1.56 2.86 -26.68 -0.08 1.48 16 17 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 18 C -0.15 -2.07 5.41 -26.59 -0.14 -2.21 16 19 C -0.12 -1.35 6.03 -26.54 -0.16 -1.51 16 20 C -0.16 -1.69 6.13 -26.58 -0.16 -1.85 16 21 C 0.06 0.73 6.84 37.21 0.25 0.99 16 22 O -0.37 -6.05 7.66 -35.23 -0.27 -6.32 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 26 H 0.09 2.42 5.99 -51.93 -0.31 2.10 16 27 H 0.03 0.71 6.40 -51.93 -0.33 0.38 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.02 0.43 7.54 -51.93 -0.39 0.04 16 30 H 0.04 0.93 7.99 -51.93 -0.42 0.51 16 31 H 0.07 1.31 5.59 -51.93 -0.29 1.02 16 32 H 0.04 0.83 6.72 -51.93 -0.35 0.48 16 33 H 0.08 1.76 6.10 -51.93 -0.32 1.44 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -28.03 308.84 -8.24 -36.27 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.32 Total: -0.30 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 0.00 Total: -13.56 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.29 Total: -37.09 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.27 Total: -6.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.03 -8.24 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251303099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.791 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds