Wall clock time and date at job start Sun Mar 29 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47200 * 2 1 4 4 H 1.09008 * 109.46771 * 303.10749 * 3 2 1 5 5 C 1.50698 * 109.47276 * 183.11412 * 3 2 1 6 6 H 1.08003 * 120.00064 * 239.99689 * 5 3 2 7 7 C 1.37880 * 120.00234 * 59.99737 * 5 3 2 8 8 N 1.31519 * 119.99454 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00125 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47339 * 89.99700 * 9 7 5 11 11 H 1.48504 * 109.46944 * 209.99741 * 9 7 5 12 12 H 1.48501 * 109.46957 * 329.99139 * 9 7 5 13 13 N 1.46902 * 109.47374 * 63.10787 * 3 2 1 14 14 C 1.46900 * 110.99806 * 194.87437 * 13 3 2 15 15 C 1.46897 * 110.99741 * 70.92438 * 13 3 2 16 16 C 1.53000 * 109.46939 * 201.13970 * 15 13 3 17 17 H 1.08996 * 109.48309 * 53.22753 * 16 15 13 18 18 C 1.53091 * 109.47986 * 173.25010 * 16 15 13 19 19 C 1.53173 * 109.21497 * 177.57020 * 18 16 15 20 20 C 1.53194 * 109.03472 * 303.11229 * 19 18 16 21 21 C 1.53093 * 109.20854 * 56.88427 * 20 19 18 22 22 O 1.42902 * 109.41490 * 302.42560 * 21 20 19 23 23 H 1.09005 * 109.47033 * 64.73834 * 1 2 3 24 24 H 1.09003 * 109.47374 * 184.73541 * 1 2 3 25 25 H 1.08999 * 109.47290 * 304.73413 * 1 2 3 26 26 H 1.08997 * 109.47176 * 239.99112 * 2 1 3 27 27 H 1.09000 * 109.46839 * 119.99455 * 2 1 3 28 28 H 0.97001 * 119.99521 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47473 * 295.26566 * 14 13 3 30 30 H 1.08995 * 109.47563 * 55.26607 * 14 13 3 31 31 H 1.09001 * 109.47097 * 175.27215 * 14 13 3 32 32 H 1.09001 * 109.47322 * 81.13632 * 15 13 3 33 33 H 1.09003 * 109.47198 * 321.13484 * 15 13 3 34 34 H 1.08995 * 109.52293 * 297.50435 * 18 16 15 35 35 H 1.09003 * 109.52355 * 57.63235 * 18 16 15 36 36 H 1.09001 * 109.54483 * 62.91597 * 19 18 16 37 37 H 1.09003 * 109.54540 * 183.18632 * 19 18 16 38 38 H 1.08997 * 109.46682 * 296.98230 * 20 19 18 39 39 H 1.08994 * 109.57857 * 176.85188 * 20 19 18 40 40 H 1.08999 * 109.47746 * 182.44768 * 21 20 19 41 41 H 1.09000 * 109.49128 * 62.41753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6318 1.9721 -0.8609 5 6 3.5450 1.4431 -0.0772 6 1 4.1260 1.8964 0.7124 7 6 4.1803 0.8652 -1.1558 8 7 3.4728 0.3129 -2.1171 9 14 6.0458 0.8655 -1.2511 10 1 6.5750 -0.3594 -0.5995 11 1 6.4687 0.8911 -2.6744 12 1 6.5768 2.0652 -0.5554 13 7 1.6126 2.1130 1.2352 14 6 1.7685 3.5695 1.1245 15 6 2.3448 1.5920 2.3973 16 6 1.5549 1.8904 3.6733 17 1 0.5370 1.5156 3.5667 18 6 2.2297 1.2038 4.8636 19 6 1.4694 1.5558 6.1459 20 6 1.4273 3.0795 6.2994 21 6 0.7835 3.6936 5.0535 22 8 1.5225 3.3017 3.8949 23 1 -0.3633 0.4386 -0.9294 24 1 -0.3634 -1.0242 0.0848 25 1 -0.3634 0.5855 0.8445 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9197 -0.0933 -2.8761 29 1 2.8258 3.8153 1.0247 30 1 1.2281 3.9272 0.2481 31 1 1.3674 4.0468 2.0186 32 1 3.3226 2.0703 2.4550 33 1 2.4729 0.5146 2.2929 34 1 2.2159 0.1238 4.7170 35 1 3.2609 1.5471 4.9457 36 1 0.4525 1.1681 6.0851 37 1 1.9781 1.1160 7.0039 38 1 2.4419 3.4615 6.4111 39 1 0.8403 3.3418 7.1796 40 1 0.7907 4.7802 5.1389 41 1 -0.2446 3.3427 4.9649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251303099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:34 Heat of formation + Delta-G solvation = -76.256744 kcal Electronic energy + Delta-G solvation = -18799.332706 eV Core-core repulsion = 16098.919140 eV Total energy + Delta-G solvation = -2700.413566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45417 -38.60585 -34.86456 -34.44196 -33.22062 -32.27557 -28.70140 -28.23909 -25.85210 -25.02487 -23.86913 -22.68435 -21.12352 -20.67585 -18.38806 -17.30679 -17.04130 -16.68662 -16.07200 -15.68749 -15.25605 -15.17976 -14.91964 -14.43966 -14.02988 -13.81345 -13.59976 -13.43498 -13.16491 -12.86366 -12.77403 -12.62967 -12.40921 -12.25537 -12.15646 -11.92271 -11.80599 -11.53880 -11.47923 -11.26366 -11.14817 -10.88960 -10.43830 -10.14769 -8.91469 -8.02771 -6.25359 1.35758 1.37612 1.46564 2.39798 2.97673 3.15206 3.42816 3.97182 4.01373 4.07272 4.23022 4.33859 4.45850 4.54675 4.62656 4.68049 4.75916 4.80941 4.83893 4.91793 4.94823 4.98763 5.04332 5.09642 5.13179 5.21305 5.22921 5.25838 5.42838 5.44854 5.47264 5.53989 5.63893 5.80887 6.09714 6.21106 6.40389 6.51799 6.69338 6.96939 7.45561 8.92210 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.006916 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.203021 B = 4047.429106 C = 4408.750814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.215 3.785 4 H 0.001 0.999 5 C -0.552 4.552 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.531 5.531 14 C 0.043 3.957 15 C 0.082 3.918 16 C 0.105 3.895 17 H 0.059 0.941 18 C -0.148 4.148 19 C -0.116 4.116 20 C -0.151 4.151 21 C 0.051 3.949 22 O -0.394 6.394 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.262 0.738 29 H -0.003 1.003 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.014 0.986 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 2.547 15.168 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.591 4.591 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.254 5.254 14 C -0.106 4.106 15 C -0.047 4.047 16 C 0.047 3.953 17 H 0.077 0.923 18 C -0.187 4.187 19 C -0.154 4.154 20 C -0.188 4.188 21 C -0.025 4.025 22 O -0.314 6.314 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.663 2.489 14.928 16.159 hybrid contribution 2.011 -0.006 -0.640 2.110 sum -3.653 2.483 14.288 14.955 Atomic orbital electron populations 1.21581 0.96263 1.00020 1.00559 1.21405 0.94509 0.97932 1.00249 1.19132 0.91598 0.91760 0.86711 0.98135 1.22007 0.94020 1.37109 1.06011 0.93539 1.25604 1.01874 0.94952 0.95353 1.70004 1.36330 1.38451 1.10149 0.85762 0.81535 0.78342 0.77229 1.19933 1.20731 1.20195 1.62369 1.54998 1.04200 1.03809 1.22271 0.97680 0.89244 1.01397 1.21885 0.94005 0.99439 0.89378 1.22108 0.98572 0.81333 0.93279 0.92269 1.22153 1.00018 1.01110 0.95372 1.21570 1.00804 0.96114 0.96872 1.22160 1.01964 0.95912 0.98800 1.22736 0.94581 1.00419 0.84809 1.87956 1.74848 1.22934 1.45677 0.95014 0.93341 0.92347 0.91993 0.94969 0.92899 0.98399 0.93836 0.89339 0.96746 0.90801 0.90489 0.92282 0.91191 0.90250 0.91990 0.88938 0.88235 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.84 71.98 0.71 -4.41 16 2 C -0.10 -4.94 5.21 30.59 0.16 -4.78 16 3 C 0.22 11.06 1.69 44.17 0.07 11.14 16 4 H 0.00 0.04 7.91 -2.38 -0.02 0.02 16 5 C -0.55 -30.69 7.31 25.60 0.19 -30.50 16 6 H 0.05 2.63 6.14 -2.91 -0.02 2.61 16 7 C 0.02 1.23 5.30 84.65 0.45 1.68 16 8 N -0.91 -52.57 11.30 21.45 0.24 -52.32 16 9 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 N -0.53 -23.40 3.89 -901.47 -3.50 -26.90 16 14 C 0.04 1.80 9.02 127.69 1.15 2.96 16 15 C 0.08 3.29 3.66 86.30 0.32 3.60 16 16 C 0.11 3.33 2.86 30.62 0.09 3.42 16 17 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 18 C -0.15 -3.82 5.41 30.68 0.17 -3.66 16 19 C -0.12 -2.26 6.03 30.72 0.19 -2.07 16 20 C -0.15 -2.81 6.13 30.69 0.19 -2.62 16 21 C 0.05 1.14 6.84 72.01 0.49 1.63 16 22 O -0.39 -12.41 7.66 -148.98 -1.14 -13.55 16 23 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.25 7.56 -2.39 -0.02 2.23 16 26 H 0.06 3.37 5.99 -2.39 -0.01 3.35 16 27 H 0.03 1.50 6.40 -2.39 -0.02 1.49 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.00 -0.12 7.54 -2.38 -0.02 -0.14 16 30 H 0.04 1.81 7.99 -2.39 -0.02 1.79 16 31 H 0.09 3.37 5.59 -2.39 -0.01 3.36 16 32 H 0.01 0.64 6.72 -2.39 -0.02 0.62 16 33 H 0.07 3.10 6.10 -2.39 -0.01 3.09 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -60.66 308.84 2.76 -57.90 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.97 Total: 12.12 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.17 Total: -23.62 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -3.26 Total: -79.22 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.14 Total: -13.55 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.66 2.76 -57.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251303099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.353 kcal (2) G-P(sol) polarization free energy of solvation -60.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds