Wall clock time and date at job start Sun Mar 29 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46902 * 2 1 4 4 H 1.08998 * 109.47473 * 305.69257 * 3 2 1 5 5 C 1.50700 * 109.47081 * 185.69463 * 3 2 1 6 6 H 1.07994 * 120.00180 * 239.99931 * 5 3 2 7 7 C 1.37879 * 119.99997 * 60.00200 * 5 3 2 8 8 N 1.31514 * 120.00234 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 119.99955 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47247 * 270.00195 * 9 7 5 11 11 H 1.48499 * 109.46801 * 30.00478 * 9 7 5 12 12 H 1.48501 * 109.46901 * 149.99796 * 9 7 5 13 13 N 1.46899 * 109.47356 * 65.69494 * 3 2 1 14 14 C 1.46896 * 111.00257 * 205.24260 * 13 3 2 15 15 C 1.52998 * 109.47058 * 185.20346 * 14 13 3 16 16 H 1.08994 * 109.47241 * 304.99635 * 15 14 13 17 17 C 1.53008 * 109.47230 * 64.99765 * 15 14 13 18 18 C 1.53006 * 109.46821 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47012 * 299.99711 * 18 17 15 20 20 C 1.52995 * 109.47254 * 60.00449 * 19 18 17 21 21 C 1.52999 * 109.47269 * 184.99564 * 15 14 13 22 22 H 1.09004 * 109.47299 * 59.99833 * 21 15 14 23 23 O 1.42902 * 109.47230 * 299.99876 * 21 15 14 24 24 H 1.09002 * 109.47318 * 294.40882 * 1 2 3 25 25 H 1.09005 * 109.47295 * 54.41403 * 1 2 3 26 26 H 1.09006 * 109.46958 * 174.41319 * 1 2 3 27 27 H 1.09004 * 109.46887 * 240.00431 * 2 1 3 28 28 H 1.08995 * 109.46953 * 120.00104 * 2 1 3 29 29 H 0.97003 * 120.00231 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99508 * 329.19704 * 13 3 2 31 31 H 1.09006 * 109.47076 * 305.19688 * 14 13 3 32 32 H 1.08993 * 109.47356 * 65.20205 * 14 13 3 33 33 H 1.08994 * 109.47020 * 299.99603 * 17 15 14 34 34 H 1.08991 * 109.47022 * 60.00328 * 17 15 14 35 35 H 1.09001 * 109.46386 * 180.02562 * 18 17 15 36 36 H 1.08994 * 109.47596 * 59.99903 * 18 17 15 37 37 H 1.09003 * 109.47148 * 300.00313 * 19 18 17 38 38 H 1.09001 * 109.46860 * 180.02562 * 19 18 17 39 39 H 1.08990 * 109.47557 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47061 * 59.99332 * 20 19 18 41 41 H 0.96701 * 113.99761 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5403 1.4449 -0.1410 6 1 4.1544 1.8863 0.6299 7 6 4.1290 0.8835 -1.2542 8 7 5.4384 0.8860 -1.3776 9 14 3.0668 0.1193 -2.5874 10 1 2.8495 -1.3180 -2.2840 11 1 1.7575 0.8181 -2.6382 12 1 3.7491 0.2507 -3.8998 13 7 1.6657 2.0942 1.2622 14 6 1.5793 3.5513 1.0970 15 6 1.3162 4.2039 2.4556 16 1 0.4254 3.7638 2.9036 17 6 2.5173 3.9711 3.3744 18 6 2.2538 4.6232 4.7333 19 6 2.0397 6.1264 4.5446 20 6 0.8387 6.3592 3.6259 21 6 1.1025 5.7070 2.2666 22 1 0.2468 5.8729 1.6120 23 8 2.2704 6.2841 1.6792 24 1 -0.3634 0.4247 0.9358 25 1 -0.3634 0.5980 -0.8358 26 1 -0.3633 -1.0228 -0.1001 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 5.8526 0.4907 -2.1606 30 1 0.8001 1.7189 1.6201 31 1 2.5178 3.9270 0.6892 32 1 0.7643 3.7919 0.4144 33 1 2.6695 2.9003 3.5092 34 1 3.4081 4.4113 2.9264 35 1 3.1097 4.4578 5.3876 36 1 1.3631 4.1827 5.1811 37 1 2.9305 6.5669 4.0968 38 1 1.8524 6.5910 5.5127 39 1 0.6858 7.4299 3.4918 40 1 -0.0521 5.9186 4.0737 41 1 2.2055 7.2373 1.5298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251340935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:40 Heat of formation + Delta-G solvation = -71.948844 kcal Electronic energy + Delta-G solvation = -18475.849375 eV Core-core repulsion = 15775.622613 eV Total energy + Delta-G solvation = -2700.226762 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20568 -36.52311 -34.83155 -32.96266 -31.84991 -29.90506 -29.53344 -27.03990 -24.17999 -22.51877 -22.19841 -20.70813 -19.87602 -19.30200 -16.71099 -16.64811 -15.53712 -15.17551 -14.71249 -14.31098 -14.00670 -13.75540 -13.51874 -12.93817 -12.65654 -12.46354 -12.28753 -12.11603 -11.79463 -11.73088 -11.51741 -11.21135 -10.92572 -10.66433 -10.50063 -10.43928 -10.22849 -10.08199 -9.88793 -9.66962 -9.50349 -9.27580 -9.10205 -8.44854 -7.24814 -5.96133 -3.92025 3.30092 3.40722 3.42663 4.43508 4.47181 4.75707 4.86053 5.00720 5.20581 5.32156 5.38943 5.50859 5.62199 5.63693 5.74444 5.76294 5.79862 5.84834 5.89200 6.00119 6.03441 6.13796 6.22581 6.34064 6.39273 6.49734 6.56228 6.67207 6.69760 6.78331 6.83980 6.95170 7.06477 7.26447 7.80011 7.86055 8.07895 8.37919 8.85940 9.17826 9.67363 11.17511 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.006317 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.038098 B = 4431.289304 C = 4743.498460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.190 3.810 4 H -0.002 1.002 5 C -0.491 4.491 6 H 0.081 0.919 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.673 5.673 14 C 0.076 3.924 15 C -0.072 4.072 16 H 0.069 0.931 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.149 4.149 21 C 0.110 3.890 22 H 0.047 0.953 23 O -0.552 6.552 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.262 0.738 30 H 0.314 0.686 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 8.906 8.847 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.082 3.918 4 H 0.016 0.984 5 C -0.529 4.529 6 H 0.099 0.901 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.226 1.226 13 N -0.303 5.303 14 C -0.054 4.054 15 C -0.091 4.091 16 H 0.087 0.913 17 C -0.138 4.138 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.187 4.187 21 C 0.050 3.950 22 H 0.065 0.935 23 O -0.356 6.356 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.026 0.974 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.286 8.238 8.991 15.954 hybrid contribution -1.626 0.167 -1.368 2.132 sum -11.913 8.405 7.623 16.452 Atomic orbital electron populations 1.21910 0.98294 1.00449 1.00697 1.22116 0.92863 1.00576 1.01738 1.19595 0.96882 0.89106 0.86262 0.98446 1.21053 0.89177 1.36977 1.05714 0.90055 1.24965 0.94735 0.96147 0.97740 1.69892 1.08914 1.46125 1.29243 0.86954 0.80778 0.79699 0.81317 1.20681 1.19422 1.22585 1.60474 1.35823 1.02778 1.31258 1.21825 1.00969 0.88931 0.93690 1.21146 0.99048 0.91576 0.97321 0.91289 1.21372 0.97913 1.01579 0.92929 1.21586 1.00865 0.94959 0.98368 1.21437 0.98387 0.97139 0.98203 1.22237 0.99120 1.00096 0.97253 1.21813 0.87328 0.94087 0.91769 0.93545 1.86665 1.39337 1.25797 1.83768 0.93141 0.93683 0.93696 0.92910 0.91341 0.92854 0.86915 0.89496 0.97385 0.90467 0.91262 0.92395 0.92793 0.91406 0.92958 0.92342 0.91490 0.78683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.65 37.16 0.36 -2.36 16 2 C -0.14 -2.95 5.01 -26.73 -0.13 -3.08 16 3 C 0.19 4.56 1.61 -68.87 -0.11 4.45 16 4 H 0.00 -0.05 6.91 -51.93 -0.36 -0.41 16 5 C -0.49 -14.17 9.13 -34.44 -0.31 -14.49 16 6 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 7 C 0.06 1.91 5.45 -17.82 -0.10 1.82 16 8 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 9 Si 0.88 22.44 24.41 -169.99 -4.15 18.29 16 10 H -0.28 -6.91 6.82 56.52 0.39 -6.52 16 11 H -0.27 -6.59 6.53 56.52 0.37 -6.22 16 12 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 13 N -0.67 -13.84 5.72 -107.96 -0.62 -14.46 16 14 C 0.08 1.44 4.63 -3.83 -0.02 1.42 16 15 C -0.07 -1.09 2.21 -90.62 -0.20 -1.29 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.10 -1.60 4.95 -26.72 -0.13 -1.73 16 18 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 19 C -0.11 -1.29 5.78 -26.73 -0.15 -1.44 16 20 C -0.15 -1.57 5.64 -26.71 -0.15 -1.72 16 21 C 0.11 1.41 3.21 -26.70 -0.09 1.32 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 O -0.55 -7.70 11.39 -35.23 -0.40 -8.10 16 24 H 0.05 0.77 6.65 -51.93 -0.35 0.43 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.24 3.21 -51.93 -0.17 1.07 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.31 5.68 6.65 -39.29 -0.26 5.42 16 31 H 0.09 1.97 7.62 -51.93 -0.40 1.57 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.08 1.37 7.75 -51.93 -0.40 0.96 16 34 H 0.07 1.27 7.68 -51.93 -0.40 0.87 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.37 3.45 9.08 45.56 0.41 3.87 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -31.60 308.30 -7.52 -39.12 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.57 Total: 6.85 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.20 Total: -18.79 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.16 Total: -42.01 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.40 Total: -8.10 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.15 Total: 18.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.60 -7.52 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251340935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.828 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds