Wall clock time and date at job start Sun Mar 29 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46902 * 2 1 4 4 H 1.08998 * 109.47473 * 305.69257 * 3 2 1 5 5 C 1.50700 * 109.47081 * 185.69463 * 3 2 1 6 6 H 1.07994 * 120.00180 * 239.99931 * 5 3 2 7 7 C 1.37879 * 119.99997 * 60.00200 * 5 3 2 8 8 N 1.31514 * 120.00234 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 119.99955 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47247 * 270.00195 * 9 7 5 11 11 H 1.48499 * 109.46801 * 30.00478 * 9 7 5 12 12 H 1.48501 * 109.46901 * 149.99796 * 9 7 5 13 13 N 1.46899 * 109.47356 * 65.69494 * 3 2 1 14 14 C 1.46896 * 111.00257 * 205.24260 * 13 3 2 15 15 C 1.52998 * 109.47058 * 185.20346 * 14 13 3 16 16 H 1.08994 * 109.47241 * 304.99635 * 15 14 13 17 17 C 1.53008 * 109.47230 * 64.99765 * 15 14 13 18 18 C 1.53006 * 109.46821 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47012 * 299.99711 * 18 17 15 20 20 C 1.52995 * 109.47254 * 60.00449 * 19 18 17 21 21 C 1.52999 * 109.47269 * 184.99564 * 15 14 13 22 22 H 1.09004 * 109.47299 * 59.99833 * 21 15 14 23 23 O 1.42902 * 109.47230 * 299.99876 * 21 15 14 24 24 H 1.09002 * 109.47318 * 294.40882 * 1 2 3 25 25 H 1.09005 * 109.47295 * 54.41403 * 1 2 3 26 26 H 1.09006 * 109.46958 * 174.41319 * 1 2 3 27 27 H 1.09004 * 109.46887 * 240.00431 * 2 1 3 28 28 H 1.08995 * 109.46953 * 120.00104 * 2 1 3 29 29 H 0.97003 * 120.00231 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99508 * 329.19704 * 13 3 2 31 31 H 1.09006 * 109.47076 * 305.19688 * 14 13 3 32 32 H 1.08993 * 109.47356 * 65.20205 * 14 13 3 33 33 H 1.08994 * 109.47020 * 299.99603 * 17 15 14 34 34 H 1.08991 * 109.47022 * 60.00328 * 17 15 14 35 35 H 1.09001 * 109.46386 * 180.02562 * 18 17 15 36 36 H 1.08994 * 109.47596 * 59.99903 * 18 17 15 37 37 H 1.09003 * 109.47148 * 300.00313 * 19 18 17 38 38 H 1.09001 * 109.46860 * 180.02562 * 19 18 17 39 39 H 1.08990 * 109.47557 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47061 * 59.99332 * 20 19 18 41 41 H 0.96701 * 113.99761 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5403 1.4449 -0.1410 6 1 4.1544 1.8863 0.6299 7 6 4.1290 0.8835 -1.2542 8 7 5.4384 0.8860 -1.3776 9 14 3.0668 0.1193 -2.5874 10 1 2.8495 -1.3180 -2.2840 11 1 1.7575 0.8181 -2.6382 12 1 3.7491 0.2507 -3.8998 13 7 1.6657 2.0942 1.2622 14 6 1.5793 3.5513 1.0970 15 6 1.3162 4.2039 2.4556 16 1 0.4254 3.7638 2.9036 17 6 2.5173 3.9711 3.3744 18 6 2.2538 4.6232 4.7333 19 6 2.0397 6.1264 4.5446 20 6 0.8387 6.3592 3.6259 21 6 1.1025 5.7070 2.2666 22 1 0.2468 5.8729 1.6120 23 8 2.2704 6.2841 1.6792 24 1 -0.3634 0.4247 0.9358 25 1 -0.3634 0.5980 -0.8358 26 1 -0.3633 -1.0228 -0.1001 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 5.8526 0.4907 -2.1606 30 1 0.8001 1.7189 1.6201 31 1 2.5178 3.9270 0.6892 32 1 0.7643 3.7919 0.4144 33 1 2.6695 2.9003 3.5092 34 1 3.4081 4.4113 2.9264 35 1 3.1097 4.4578 5.3876 36 1 1.3631 4.1827 5.1811 37 1 2.9305 6.5669 4.0968 38 1 1.8524 6.5910 5.5127 39 1 0.6858 7.4299 3.4918 40 1 -0.0521 5.9186 4.0737 41 1 2.2055 7.2373 1.5298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251340935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:40 Heat of formation + Delta-G solvation = -96.220814 kcal Electronic energy + Delta-G solvation = -18476.901886 eV Core-core repulsion = 15775.622613 eV Total energy + Delta-G solvation = -2701.279273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.33397 -38.23724 -35.94824 -34.65809 -33.78826 -31.18844 -30.67017 -28.95838 -25.69702 -24.16644 -23.33851 -21.92420 -21.70603 -20.52195 -18.85046 -17.71032 -17.03727 -16.71869 -16.09561 -15.91398 -15.44681 -15.00623 -14.92528 -14.75817 -14.11284 -13.74602 -13.66636 -13.62817 -13.25771 -13.09025 -12.78137 -12.61323 -12.50220 -12.27776 -12.11534 -11.83254 -11.70841 -11.48870 -11.34005 -11.27227 -11.16986 -10.79393 -10.64710 -10.46591 -8.98782 -8.26924 -6.28289 1.26618 1.32461 1.42823 2.31127 3.05492 3.42135 3.49910 3.89000 3.99325 4.01225 4.22611 4.27985 4.34641 4.39602 4.43259 4.55124 4.58789 4.61591 4.69785 4.77726 4.86055 4.95301 5.03943 5.06303 5.09907 5.14353 5.21596 5.25082 5.32615 5.38130 5.45024 5.47631 5.57875 5.72242 5.72902 6.09722 6.53288 6.78286 7.01330 7.05558 7.35837 8.91026 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.006317 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.038098 B = 4431.289304 C = 4743.498460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.196 3.804 4 H -0.012 1.012 5 C -0.497 4.497 6 H 0.027 0.973 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.952 3.048 10 H -0.262 1.262 11 H -0.250 1.250 12 H -0.299 1.299 13 N -0.678 5.678 14 C 0.082 3.918 15 C -0.068 4.068 16 H 0.094 0.906 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.140 4.140 21 C 0.108 3.892 22 H 0.061 0.939 23 O -0.581 6.581 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.264 0.736 30 H 0.335 0.665 31 H 0.037 0.963 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.061 9.131 9.481 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.087 3.913 4 H 0.006 0.994 5 C -0.536 4.536 6 H 0.045 0.955 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.174 1.174 12 H -0.227 1.227 13 N -0.311 5.311 14 C -0.048 4.048 15 C -0.086 4.086 16 H 0.112 0.888 17 C -0.134 4.134 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.178 4.178 21 C 0.048 3.952 22 H 0.079 0.921 23 O -0.388 6.388 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.154 0.846 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -14.081 8.482 9.653 19.063 hybrid contribution -0.340 0.159 -1.491 1.537 sum -14.422 8.641 8.162 18.689 Atomic orbital electron populations 1.21837 0.94167 1.02457 1.02050 1.21993 0.96505 0.97925 1.00831 1.19370 0.93393 0.91201 0.87374 0.99429 1.21315 0.91894 1.36024 1.04370 0.95507 1.25873 0.96031 0.96839 1.00510 1.70068 1.11212 1.47841 1.30405 0.85804 0.79317 0.79594 0.77374 1.18822 1.17433 1.22722 1.60280 1.37309 1.03738 1.29726 1.21734 0.98676 0.88039 0.96352 1.21150 0.99280 0.93642 0.94559 0.88798 1.21255 0.97040 0.99868 0.95244 1.21546 1.01653 0.96141 0.95915 1.21431 0.98362 0.95657 0.99597 1.22185 0.99050 1.01459 0.95103 1.21870 0.87203 0.92302 0.93780 0.92129 1.86639 1.40374 1.27659 1.84167 0.90949 0.93452 0.91161 0.94366 0.91801 0.92727 0.84612 0.94476 0.96371 0.93136 0.95133 0.92555 0.90921 0.93030 0.90610 0.89968 0.89798 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.65 71.98 0.69 -3.86 16 2 C -0.13 -5.64 5.01 30.59 0.15 -5.49 16 3 C 0.20 9.46 1.61 44.17 0.07 9.53 16 4 H -0.01 -0.59 6.91 -2.39 -0.02 -0.60 16 5 C -0.50 -30.20 9.13 25.60 0.23 -29.97 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.00 0.21 5.45 84.66 0.46 0.67 16 8 N -0.95 -62.69 13.96 21.45 0.30 -62.39 16 9 Si 0.95 46.80 24.41 68.60 1.67 48.48 16 10 H -0.26 -12.10 6.82 99.48 0.68 -11.42 16 11 H -0.25 -11.44 6.53 99.48 0.65 -10.79 16 12 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 13 N -0.68 -28.05 5.72 -495.47 -2.84 -30.89 16 14 C 0.08 3.15 4.63 86.30 0.40 3.55 16 15 C -0.07 -2.00 2.21 -10.79 -0.02 -2.02 16 16 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 17 C -0.10 -3.16 4.95 30.60 0.15 -3.01 16 18 C -0.12 -2.78 5.92 30.60 0.18 -2.60 16 19 C -0.11 -2.29 5.78 30.59 0.18 -2.11 16 20 C -0.14 -2.45 5.64 30.61 0.17 -2.28 16 21 C 0.11 2.57 3.21 30.61 0.10 2.66 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 O -0.58 -16.26 11.39 -148.98 -1.70 -17.96 16 24 H 0.07 1.90 6.65 -2.39 -0.02 1.89 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.04 1.71 3.21 -2.38 -0.01 1.70 16 28 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 30 H 0.33 11.46 6.65 -89.69 -0.60 10.87 16 31 H 0.04 1.79 7.62 -2.38 -0.02 1.77 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.88 7.75 -2.39 -0.02 1.86 16 34 H 0.03 1.20 7.68 -2.39 -0.02 1.19 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.21 7.68 -2.39 -0.02 1.20 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.39 6.98 9.08 -74.06 -0.67 6.31 16 Total: -1.00 -73.76 308.30 -0.14 -73.91 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.35 Total: 23.77 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 2.77 Total: -34.92 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -2.54 Total: -93.27 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.70 Total: -17.96 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.48 kcal Total: -73.76 -0.14 -73.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251340935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.312 kcal (2) G-P(sol) polarization free energy of solvation -73.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds